version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3634 55.42 +1 4260418..4260666 - 82 145600957 - YPDSF_3710 - type III secretion apparatus 3635 41.67 -1 4260888..4261595 - 235 145600958 - YPDSF_3711 - AraC family transcription regulator 3636 39.64 -1 4261702..4261923 - 73 145600959 - YPDSF_3712 - type III secretion apparatus 3637 46.83 0 4261942..4263156 - 404 145600960 - YPDSF_3713 - type-III secretion protein 3638 43.74 0 4263158..4264675 - 505 145600961 - YPDSF_3714 - type III secretion protein 3639 46.99 0 4264901..4267720 + 939 145600962 - YPDSF_3715 - two-component sensor/regulator 3640 45.02 0 4267733..4268365 + 210 145600963 - YPDSF_3716 - two-component response regulator 3641 43.36 0 4268543..4269859 - 438 145600964 gltP YPDSF_3717 - glutamate/aspartate:proton symporter 3642 47.73 0 4270714..4272672 + 652 145600965 - YPDSF_3718 - acetyl-CoA synthetase 3643 41.67 -1 4272729..4273040 + 103 145600966 - YPDSF_3719 - hypothetical protein 3644 47.10 0 4273037..4274692 + 551 145600967 actP YPDSF_3720 - acetate permease 3645 45.49 0 4274766..4275752 - 328 145600968 - YPDSF_3721 - hypothetical protein 3646 52.79 0 4275811..4276833 + 340 145600969 - YPDSF_3722 - transposase 3647 50.38 0 4276833..4277612 + 259 145600970 - YPDSF_3723 - transposase/IS protein 3648 49.34 0 4278277..4279032 - 251 145600971 - YPDSF_3724 - transposase 3649 47.94 0 4279110..4279376 - 88 145600972 - YPDSF_3725 - helix-turn-helix, Fis-type 3650 51.38 0 4285640..4287229 + 529 145600973 purH YPDSF_3726 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3651 51.67 0 4287289..4288575 + 428 145600974 - YPDSF_3727 - phosphoribosylamine--glycine ligase 3652 53.21 +1 4288742..4289395 - 217 145600975 - YPDSF_3728 - hypothetical protein 3653 45.29 0 4289445..4289720 - 91 145600976 - YPDSF_3729 - transcriptional regulator HU subunit alpha 3654 44.16 0 4289909..4290499 - 196 145600977 - YPDSF_3730 - hypothetical protein 3655 51.96 0 4290545..4291285 - 246 145600978 - YPDSF_3731 - endonuclease V 3656 51.22 0 4291315..4292382 - 355 145600979 hemE YPDSF_3732 - uroporphyrinogen decarboxylase 3657 41.40 -1 4292501..4293244 - 247 145600980 - YPDSF_3733 - hypothetical protein 3658 49.68 0 4293379..4294161 - 260 145600981 nudC YPDSF_3734 - NADH pyrophosphatase 3659 45.02 0 4294246..4294767 + 173 145600982 - YPDSF_3735 - anti-RNA polymerase sigma 70 factor 3660 51.81 0 4295143..4297188 + 681 145600983 - YPDSF_3736 - thiamine biosynthesis protein ThiC 3661 53.33 +1 4297175..4297849 + 224 145600984 - YPDSF_3737 - thiamine-phosphate pyrophosphorylase 3662 54.01 +1 4297839..4298636 + 265 145600985 - YPDSF_3738 - thiamine biosynthesis protein ThiF 3663 49.54 0 4298633..4298848 + 71 145600986 - YPDSF_3739 - sulfur carrier protein ThiS 3664 51.19 0 4301082..4305338 - 1418 145600987 - YPDSF_3744 - DNA-directed RNA polymerase subunit beta' 3665 49.37 0 4305431..4309459 - 1342 145600988 rpoB YPDSF_3745 - DNA-directed RNA polymerase subunit beta 3666 46.88 0 4309802..4310170 - 122 145600989 rplL YPDSF_3746 - 50S ribosomal protein L7/L12 3667 49.40 0 4310237..4310734 - 165 145600990 rplJ YPDSF_3747 - 50S ribosomal protein L10 3668 47.23 0 4311099..4311803 - 234 145600991 rplA YPDSF_3748 - 50S ribosomal protein L1 3669 48.72 0 4311807..4312235 - 142 145600992 rplK YPDSF_3749 - 50S ribosomal protein L11 3670 48.72 0 4312426..4312971 - 181 145600993 nusG YPDSF_3750 - transcription antitermination protein NusG 3671 48.70 0 4312973..4313356 - 127 145600994 secE YPDSF_3751 - preprotein translocase subunit SecE 3672 48.02 0 4313607..4314791 - 394 145600995 - YPDSF_3752 - elongation factor Tu 3673 50.00 0 4315848..4316033 - 61 145600996 - YPDSF_3753 - IS100 transposase 3674 51.27 0 4316116..4316628 - 170 145600997 - YPDSF_3754 - IS100 transposase 3675 52.79 0 4316628..4317650 - 340 145600998 - YPDSF_3755 - transposase for insertion sequence IS100 3676 47.75 0 4318267..4319730 - 487 145600999 - YPDSF_3756 - hypothetical protein 3677 48.26 0 4319942..4320142 + 66 145601000 - YPDSF_3757 - hypothetical protein 3678 49.00 0 4320198..4321601 - 467 145601001 - YPDSF_3758 - amino acid permease 3679 50.75 0 4322019..4323551 - 510 145601002 - YPDSF_3759 - histidine ammonia-lyase 3680 51.24 0 4323548..4325239 - 563 145601003 - YPDSF_3760 - urocanate hydratase 3681 37.57 -2 4325966..4326910 + 314 145601004 - YPDSF_3761 - pyridoxal-phosphate dependent protein 3682 36.33 -2 4326907..4327473 + 188 145601005 - YPDSF_3762 - adenine phosphoribosyltransferase 3683 41.08 -1 4327556..4328485 + 309 145601006 - YPDSF_3763 - hypothetical protein 3684 45.54 0 4328487..4329731 + 414 145601007 - YPDSF_3764 - hypothetical protein 3685 47.69 0 4330254..4331207 + 317 145601008 - YPDSF_3765 - iron transport protein 3686 49.90 0 4331217..4332176 + 319 145601009 - YPDSF_3766 - iron transport permease 3687 46.23 0 4332166..4333173 + 335 145601010 - YPDSF_3767 - iron transport permease 3688 44.01 0 4333170..4333928 + 252 145601011 - YPDSF_3768 - iron ABC transporter, ATP-binding protein 3689 39.78 -1 4334661..4334846 - 61 145601012 - YPDSF_3770 - hypothetical protein 3690 43.80 0 4335778..4336140 + 120 145601013 - YPDSF_3771 - regulator 3691 53.29 +1 4336333..4336818 + 161 145601014 - YPDSF_3772 - transposase 3692 49.66 0 4336818..4337111 + 97 145601015 - YPDSF_3773 - hypothetical protein 3693 31.43 -2 4337798..4339270 - 490 145601016 - YPDSF_3774 - hypothetical protein 3694 45.98 0 4339164..4340357 - 397 145601017 - YPDSF_3775 - phage integrase 3695 48.41 0 4340743..4341936 - 397 145601018 - YPDSF_3776 - AraC family transcription regulator 3696 52.07 0 4342026..4343210 - 394 145601019 - YPDSF_3777 - sugar transport system permease protein 3697 48.40 0 4343197..4344729 - 510 145601020 - YPDSF_3778 - xylose transporter ATP-binding subunit 3698 41.97 -1 4344937..4345932 - 331 145601021 xylF YPDSF_3779 - D-xylose transporter subunit XylF 3699 48.79 0 4346395..4347714 + 439 145601022 - YPDSF_3780 - xylose isomerase 3700 52.99 +1 4347838..4349292 + 484 145601023 - YPDSF_3781 - xylulose kinase 3701 41.54 -1 4349410..4350396 - 328 145601024 - YPDSF_3782 - hypothetical protein 3702 42.71 -1 4350435..4351202 - 255 145601025 - YPDSF_3783 - fimbrial chaperone 3703 49.06 0 4351295..4351930 - 211 145601026 - YPDSF_3784 - outer membrane fimbrial usher porin 3704 44.81 0 4351956..4353785 - 609 145601027 - YPDSF_3785 - hypothetical protein 3705 46.06 0 4353861..4354418 - 185 145601028 - YPDSF_3786 - fimbrial protein 3706 46.42 0 4355295..4356287 - 330 145601029 - YPDSF_3787 - hypothetical protein 3707 49.19 0 4356491..4357165 + 224 145601030 - YPDSF_3788 - insertion element IS1661 DNA-binding protein 3708 46.44 0 4357219..4358004 + 261 145601031 - YPDSF_3789 - transposase for insertion sequence IS1661 3709 49.94 0 4358174..4359058 - 294 145601032 metF YPDSF_3790 - 5,10-methylenetetrahydrofolate reductase 3710 52.59 0 4359291..4361726 - 811 145601033 metL YPDSF_3791 - bifunctional aspartate kinase II/homoserine dehydrogenase II 3711 52.11 0 4361729..4362889 - 386 145601034 - YPDSF_3792 - cystathionine gamma-synthase 3712 49.37 0 4363267..4363584 + 105 145601035 - YPDSF_3793 - transcriptional repressor protein MetJ 3713 40.35 -1 4363556..4363726 + 56 145601036 - YPDSF_3794 - hypothetical protein 3714 42.95 -1 4363921..4364388 + 155 145601037 - YPDSF_3795 - hypothetical protein 3715 49.07 0 4364914..4365129 - 71 145601038 rpmE YPDSF_3796 - 50S ribosomal protein L31 3716 52.89 +1 4365382..4367580 + 732 145601039 - YPDSF_3797 - primosome assembly protein PriA 3717 48.66 0 4367957..4368961 + 334 145601040 - YPDSF_3798 - DNA-binding transcriptional regulator CytR 3718 53.07 +1 4369027..4369872 + 281 145601041 - YPDSF_3799 - cell division protein FtsN 3719 48.76 0 4369972..4370496 + 174 145601042 - YPDSF_3800 - ATP-dependent protease peptidase subunit 3720 48.80 0 4370567..4371898 + 443 145601043 hslU YPDSF_3801 - ATP-dependent protease ATP-binding subunit 3721 48.82 0 4372122..4373051 + 309 145601044 - YPDSF_3802 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3722 47.53 0 4373193..4373678 + 161 145601045 - YPDSF_3803 - ribonuclease activity regulator protein RraA 3723 53.16 +1 4373795..4374379 - 194 145601046 - YPDSF_3804 - hypothetical protein 3724 29.33 -2 4374685..4374834 - 49 145601047 - YPDSF_3805 - hypothetical protein 3725 45.83 0 4375009..4375248 - 79 145601048 - YPDSF_3806 - hypothetical protein 3726 39.13 -1 4375461..4376753 + 430 145601049 - YPDSF_3807 - hypothetical protein 3727 43.83 0 4376746..4378860 + 704 145601050 - YPDSF_3808 - hypothetical protein 3728 50.00 0 4378869..4379054 - 61 145601051 - YPDSF_3809 - hypothetical protein 3729 45.75 0 4379231..4379689 + 152 145601052 - YPDSF_3810 - transposase for the IS1541 insertion element 3730 42.92 -1 4379897..4380136 - 79 145601053 - YPDSF_3811 - hypothetical protein 3731 50.88 0 4380796..4381644 + 282 145601054 - YPDSF_3812 - glycerol uptake facilitator protein 3732 52.03 0 4381821..4383344 + 507 145601055 - YPDSF_3813 - hypothetical protein 3733 52.42 0 4383581..4384591 + 336 145601056 glpX YPDSF_3814 - fructose 1,6-bisphosphatase II 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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