IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3611	 50.76	0	4238363..4240393	+	676	145600934	-	YPDSF_3687	-	hemin receptor precursor
3612	 50.58	0	4240512..4241549	+	345	145600935	-	YPDSF_3688	-	hemin transport protein
3613	 53.33	+1	4241546..4242385	+	279	145600936	-	YPDSF_3689	-	hemin-binding periplasmic protein
3614	 55.62	+1	4242382..4243386	+	334	145600937	-	YPDSF_3690	-	hemin transport system permease protein HmuU
3615	 53.81	+1	4243379..4244179	+	266	145600938	-	YPDSF_3691	-	hemin importer ATP-binding subunit
3616	 45.43	0	4244320..4245501	-	393	145600939	-	YPDSF_3692	-	cystathionine beta-lyase
3617	 39.24	-1	4245547..4246833	-	428	145600940	-	YPDSF_3693	-	transmembrane transport protein
3618	 38.41	-2	4247003..4247986	+	327	145600941	-	YPDSF_3694	-	LysR family transcriptional regulator
3619	 54.81	+1	4248064..4248333	-	89	145600942	-	YPDSF_3695	-	hypothetical protein
3620	 52.59	0	4248330..4249544	-	404	145600943	-	YPDSF_3696	-	putative inner membrane protein
3621	 48.97	0	4249927..4250994	-	355	145600944	-	YPDSF_3697	-	secretion system apparatus protein SsaU
3622	 51.57	0	4250984..4251778	-	264	145600945	-	YPDSF_3698	-	type III secretion apparatus protein
3623	 47.62	0	4251780..4252073	-	97	145600946	-	YPDSF_3699	-	type III secretion apparatus protein
3624	 45.15	0	4252070..4252780	-	236	145600947	-	YPDSF_3700	-	type III secretion system protein
3625	 54.62	+1	4252847..4253809	-	320	145600948	-	YPDSF_3701	-	type III secretion system protein
3626	 50.13	0	4253787..4254185	-	132	145600949	-	YPDSF_3702	-	hypothetical protein
3627	 56.72	+1	4254166..4254567	-	133	145600950	-	YPDSF_3703	-	type III secretion system apparatus protein
3628	 57.39	+1	4254564..4255910	-	448	145600951	-	YPDSF_3704	-	type III secretion system ATPase
3629	 51.98	0	4255888..4257903	-	671	145600952	-	YPDSF_3705	-	secretion system apparatus protein SsaV
3630	 55.09	+1	4257929..4258576	-	215	145600953	-	YPDSF_3706	-	type III secretion system apparatus protein
3631	 54.44	+1	4258573..4259169	-	198	145600954	-	YPDSF_3707	-	hypothetical protein
3632	 49.04	0	4259341..4260072	-	243	145600955	-	YPDSF_3708	-	type III secretion system apparatus lipoprotein
3633	 49.60	0	4260069..4260320	-	83	145600956	-	YPDSF_3709	-	type III secretion apparatus
3634	 55.42	+1	4260418..4260666	-	82	145600957	-	YPDSF_3710	-	type III secretion apparatus
3635	 41.67	-1	4260888..4261595	-	235	145600958	-	YPDSF_3711	-	AraC family transcription regulator
3636	 39.64	-1	4261702..4261923	-	73	145600959	-	YPDSF_3712	-	type III secretion apparatus
3637	 46.83	0	4261942..4263156	-	404	145600960	-	YPDSF_3713	-	type-III secretion protein
3638	 43.74	0	4263158..4264675	-	505	145600961	-	YPDSF_3714	-	type III secretion protein
3639	 46.99	0	4264901..4267720	+	939	145600962	-	YPDSF_3715	-	two-component sensor/regulator
3640	 45.02	0	4267733..4268365	+	210	145600963	-	YPDSF_3716	-	two-component response regulator
3641	 43.36	0	4268543..4269859	-	438	145600964	gltP	YPDSF_3717	-	glutamate/aspartate:proton symporter
3642	 47.73	0	4270714..4272672	+	652	145600965	-	YPDSF_3718	-	acetyl-CoA synthetase
3643	 41.67	-1	4272729..4273040	+	103	145600966	-	YPDSF_3719	-	hypothetical protein
3644	 47.10	0	4273037..4274692	+	551	145600967	actP	YPDSF_3720	-	acetate permease
3645	 45.49	0	4274766..4275752	-	328	145600968	-	YPDSF_3721	-	hypothetical protein
3646	 52.79	0	4275811..4276833	+	340	145600969	-	YPDSF_3722	-	transposase
3647	 50.38	0	4276833..4277612	+	259	145600970	-	YPDSF_3723	-	transposase/IS protein
3648	 49.34	0	4278277..4279032	-	251	145600971	-	YPDSF_3724	-	transposase
3649	 47.94	0	4279110..4279376	-	88	145600972	-	YPDSF_3725	-	helix-turn-helix, Fis-type
3650	 51.38	0	4285640..4287229	+	529	145600973	purH	YPDSF_3726	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3651	 51.67	0	4287289..4288575	+	428	145600974	-	YPDSF_3727	-	phosphoribosylamine--glycine ligase
3652	 53.21	+1	4288742..4289395	-	217	145600975	-	YPDSF_3728	-	hypothetical protein
3653	 45.29	0	4289445..4289720	-	91	145600976	-	YPDSF_3729	-	transcriptional regulator HU subunit alpha
3654	 44.16	0	4289909..4290499	-	196	145600977	-	YPDSF_3730	-	hypothetical protein
3655	 51.96	0	4290545..4291285	-	246	145600978	-	YPDSF_3731	-	endonuclease V
3656	 51.22	0	4291315..4292382	-	355	145600979	hemE	YPDSF_3732	-	uroporphyrinogen decarboxylase
3657	 41.40	-1	4292501..4293244	-	247	145600980	-	YPDSF_3733	-	hypothetical protein
3658	 49.68	0	4293379..4294161	-	260	145600981	nudC	YPDSF_3734	-	NADH pyrophosphatase
3659	 45.02	0	4294246..4294767	+	173	145600982	-	YPDSF_3735	-	anti-RNA polymerase sigma 70 factor
3660	 51.81	0	4295143..4297188	+	681	145600983	-	YPDSF_3736	-	thiamine biosynthesis protein ThiC
3661	 53.33	+1	4297175..4297849	+	224	145600984	-	YPDSF_3737	-	thiamine-phosphate pyrophosphorylase
3662	 54.01	+1	4297839..4298636	+	265	145600985	-	YPDSF_3738	-	thiamine biosynthesis protein ThiF
3663	 49.54	0	4298633..4298848	+	71	145600986	-	YPDSF_3739	-	sulfur carrier protein ThiS
3664	 51.19	0	4301082..4305338	-	1418	145600987	-	YPDSF_3744	-	DNA-directed RNA polymerase subunit beta'
3665	 49.37	0	4305431..4309459	-	1342	145600988	rpoB	YPDSF_3745	-	DNA-directed RNA polymerase subunit beta
3666	 46.88	0	4309802..4310170	-	122	145600989	rplL	YPDSF_3746	-	50S ribosomal protein L7/L12
3667	 49.40	0	4310237..4310734	-	165	145600990	rplJ	YPDSF_3747	-	50S ribosomal protein L10
3668	 47.23	0	4311099..4311803	-	234	145600991	rplA	YPDSF_3748	-	50S ribosomal protein L1
3669	 48.72	0	4311807..4312235	-	142	145600992	rplK	YPDSF_3749	-	50S ribosomal protein L11
3670	 48.72	0	4312426..4312971	-	181	145600993	nusG	YPDSF_3750	-	transcription antitermination protein NusG
3671	 48.70	0	4312973..4313356	-	127	145600994	secE	YPDSF_3751	-	preprotein translocase subunit SecE
3672	 48.02	0	4313607..4314791	-	394	145600995	-	YPDSF_3752	-	elongation factor Tu
3673	 50.00	0	4315848..4316033	-	61	145600996	-	YPDSF_3753	-	IS100 transposase
3674	 51.27	0	4316116..4316628	-	170	145600997	-	YPDSF_3754	-	IS100 transposase
3675	 52.79	0	4316628..4317650	-	340	145600998	-	YPDSF_3755	-	transposase for insertion sequence IS100
3676	 47.75	0	4318267..4319730	-	487	145600999	-	YPDSF_3756	-	hypothetical protein
3677	 48.26	0	4319942..4320142	+	66	145601000	-	YPDSF_3757	-	hypothetical protein
3678	 49.00	0	4320198..4321601	-	467	145601001	-	YPDSF_3758	-	amino acid permease
3679	 50.75	0	4322019..4323551	-	510	145601002	-	YPDSF_3759	-	histidine ammonia-lyase
3680	 51.24	0	4323548..4325239	-	563	145601003	-	YPDSF_3760	-	urocanate hydratase
3681	 37.57	-2	4325966..4326910	+	314	145601004	-	YPDSF_3761	-	pyridoxal-phosphate dependent protein
3682	 36.33	-2	4326907..4327473	+	188	145601005	-	YPDSF_3762	-	adenine phosphoribosyltransferase
3683	 41.08	-1	4327556..4328485	+	309	145601006	-	YPDSF_3763	-	hypothetical protein
3684	 45.54	0	4328487..4329731	+	414	145601007	-	YPDSF_3764	-	hypothetical protein
3685	 47.69	0	4330254..4331207	+	317	145601008	-	YPDSF_3765	-	iron transport protein
3686	 49.90	0	4331217..4332176	+	319	145601009	-	YPDSF_3766	-	iron transport permease
3687	 46.23	0	4332166..4333173	+	335	145601010	-	YPDSF_3767	-	iron transport permease
3688	 44.01	0	4333170..4333928	+	252	145601011	-	YPDSF_3768	-	iron ABC transporter, ATP-binding protein
3689	 39.78	-1	4334661..4334846	-	61	145601012	-	YPDSF_3770	-	hypothetical protein
3690	 43.80	0	4335778..4336140	+	120	145601013	-	YPDSF_3771	-	regulator
3691	 53.29	+1	4336333..4336818	+	161	145601014	-	YPDSF_3772	-	transposase
3692	 49.66	0	4336818..4337111	+	97	145601015	-	YPDSF_3773	-	hypothetical protein
3693	 31.43	-2	4337798..4339270	-	490	145601016	-	YPDSF_3774	-	hypothetical protein
3694	 45.98	0	4339164..4340357	-	397	145601017	-	YPDSF_3775	-	phage integrase
3695	 48.41	0	4340743..4341936	-	397	145601018	-	YPDSF_3776	-	AraC family transcription regulator
3696	 52.07	0	4342026..4343210	-	394	145601019	-	YPDSF_3777	-	sugar transport system permease protein
3697	 48.40	0	4343197..4344729	-	510	145601020	-	YPDSF_3778	-	xylose transporter ATP-binding subunit
3698	 41.97	-1	4344937..4345932	-	331	145601021	xylF	YPDSF_3779	-	D-xylose transporter subunit XylF
3699	 48.79	0	4346395..4347714	+	439	145601022	-	YPDSF_3780	-	xylose isomerase
3700	 52.99	+1	4347838..4349292	+	484	145601023	-	YPDSF_3781	-	xylulose kinase
3701	 41.54	-1	4349410..4350396	-	328	145601024	-	YPDSF_3782	-	hypothetical protein
3702	 42.71	-1	4350435..4351202	-	255	145601025	-	YPDSF_3783	-	fimbrial chaperone
3703	 49.06	0	4351295..4351930	-	211	145601026	-	YPDSF_3784	-	outer membrane fimbrial usher porin
3704	 44.81	0	4351956..4353785	-	609	145601027	-	YPDSF_3785	-	hypothetical protein
3705	 46.06	0	4353861..4354418	-	185	145601028	-	YPDSF_3786	-	fimbrial protein
3706	 46.42	0	4355295..4356287	-	330	145601029	-	YPDSF_3787	-	hypothetical protein
3707	 49.19	0	4356491..4357165	+	224	145601030	-	YPDSF_3788	-	insertion element IS1661 DNA-binding protein
3708	 46.44	0	4357219..4358004	+	261	145601031	-	YPDSF_3789	-	transposase for insertion sequence IS1661
3709	 49.94	0	4358174..4359058	-	294	145601032	metF	YPDSF_3790	-	5,10-methylenetetrahydrofolate reductase
3710	 52.59	0	4359291..4361726	-	811	145601033	metL	YPDSF_3791	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.