version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3609 53.46 +1 4237306..4237956 + 216 145600932 - YPDSF_3685 - hypothetical protein 3610 45.83 0 4238042..4238233 + 63 145600933 - YPDSF_3686 - hemin uptake protein hemp 3611 50.76 0 4238363..4240393 + 676 145600934 - YPDSF_3687 - hemin receptor precursor 3612 50.58 0 4240512..4241549 + 345 145600935 - YPDSF_3688 - hemin transport protein 3613 53.33 +1 4241546..4242385 + 279 145600936 - YPDSF_3689 - hemin-binding periplasmic protein 3614 55.62 +1 4242382..4243386 + 334 145600937 - YPDSF_3690 - hemin transport system permease protein HmuU 3615 53.81 +1 4243379..4244179 + 266 145600938 - YPDSF_3691 - hemin importer ATP-binding subunit 3616 45.43 0 4244320..4245501 - 393 145600939 - YPDSF_3692 - cystathionine beta-lyase 3617 39.24 -1 4245547..4246833 - 428 145600940 - YPDSF_3693 - transmembrane transport protein 3618 38.41 -2 4247003..4247986 + 327 145600941 - YPDSF_3694 - LysR family transcriptional regulator 3619 54.81 +1 4248064..4248333 - 89 145600942 - YPDSF_3695 - hypothetical protein 3620 52.59 0 4248330..4249544 - 404 145600943 - YPDSF_3696 - putative inner membrane protein 3621 48.97 0 4249927..4250994 - 355 145600944 - YPDSF_3697 - secretion system apparatus protein SsaU 3622 51.57 0 4250984..4251778 - 264 145600945 - YPDSF_3698 - type III secretion apparatus protein 3623 47.62 0 4251780..4252073 - 97 145600946 - YPDSF_3699 - type III secretion apparatus protein 3624 45.15 0 4252070..4252780 - 236 145600947 - YPDSF_3700 - type III secretion system protein 3625 54.62 +1 4252847..4253809 - 320 145600948 - YPDSF_3701 - type III secretion system protein 3626 50.13 0 4253787..4254185 - 132 145600949 - YPDSF_3702 - hypothetical protein 3627 56.72 +1 4254166..4254567 - 133 145600950 - YPDSF_3703 - type III secretion system apparatus protein 3628 57.39 +1 4254564..4255910 - 448 145600951 - YPDSF_3704 - type III secretion system ATPase 3629 51.98 0 4255888..4257903 - 671 145600952 - YPDSF_3705 - secretion system apparatus protein SsaV 3630 55.09 +1 4257929..4258576 - 215 145600953 - YPDSF_3706 - type III secretion system apparatus protein 3631 54.44 +1 4258573..4259169 - 198 145600954 - YPDSF_3707 - hypothetical protein 3632 49.04 0 4259341..4260072 - 243 145600955 - YPDSF_3708 - type III secretion system apparatus lipoprotein 3633 49.60 0 4260069..4260320 - 83 145600956 - YPDSF_3709 - type III secretion apparatus 3634 55.42 +1 4260418..4260666 - 82 145600957 - YPDSF_3710 - type III secretion apparatus 3635 41.67 -1 4260888..4261595 - 235 145600958 - YPDSF_3711 - AraC family transcription regulator 3636 39.64 -1 4261702..4261923 - 73 145600959 - YPDSF_3712 - type III secretion apparatus 3637 46.83 0 4261942..4263156 - 404 145600960 - YPDSF_3713 - type-III secretion protein 3638 43.74 0 4263158..4264675 - 505 145600961 - YPDSF_3714 - type III secretion protein 3639 46.99 0 4264901..4267720 + 939 145600962 - YPDSF_3715 - two-component sensor/regulator 3640 45.02 0 4267733..4268365 + 210 145600963 - YPDSF_3716 - two-component response regulator 3641 43.36 0 4268543..4269859 - 438 145600964 gltP YPDSF_3717 - glutamate/aspartate:proton symporter 3642 47.73 0 4270714..4272672 + 652 145600965 - YPDSF_3718 - acetyl-CoA synthetase 3643 41.67 -1 4272729..4273040 + 103 145600966 - YPDSF_3719 - hypothetical protein 3644 47.10 0 4273037..4274692 + 551 145600967 actP YPDSF_3720 - acetate permease 3645 45.49 0 4274766..4275752 - 328 145600968 - YPDSF_3721 - hypothetical protein 3646 52.79 0 4275811..4276833 + 340 145600969 - YPDSF_3722 - transposase 3647 50.38 0 4276833..4277612 + 259 145600970 - YPDSF_3723 - transposase/IS protein 3648 49.34 0 4278277..4279032 - 251 145600971 - YPDSF_3724 - transposase 3649 47.94 0 4279110..4279376 - 88 145600972 - YPDSF_3725 - helix-turn-helix, Fis-type 3650 51.38 0 4285640..4287229 + 529 145600973 purH YPDSF_3726 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3651 51.67 0 4287289..4288575 + 428 145600974 - YPDSF_3727 - phosphoribosylamine--glycine ligase 3652 53.21 +1 4288742..4289395 - 217 145600975 - YPDSF_3728 - hypothetical protein 3653 45.29 0 4289445..4289720 - 91 145600976 - YPDSF_3729 - transcriptional regulator HU subunit alpha 3654 44.16 0 4289909..4290499 - 196 145600977 - YPDSF_3730 - hypothetical protein 3655 51.96 0 4290545..4291285 - 246 145600978 - YPDSF_3731 - endonuclease V 3656 51.22 0 4291315..4292382 - 355 145600979 hemE YPDSF_3732 - uroporphyrinogen decarboxylase 3657 41.40 -1 4292501..4293244 - 247 145600980 - YPDSF_3733 - hypothetical protein 3658 49.68 0 4293379..4294161 - 260 145600981 nudC YPDSF_3734 - NADH pyrophosphatase 3659 45.02 0 4294246..4294767 + 173 145600982 - YPDSF_3735 - anti-RNA polymerase sigma 70 factor 3660 51.81 0 4295143..4297188 + 681 145600983 - YPDSF_3736 - thiamine biosynthesis protein ThiC 3661 53.33 +1 4297175..4297849 + 224 145600984 - YPDSF_3737 - thiamine-phosphate pyrophosphorylase 3662 54.01 +1 4297839..4298636 + 265 145600985 - YPDSF_3738 - thiamine biosynthesis protein ThiF 3663 49.54 0 4298633..4298848 + 71 145600986 - YPDSF_3739 - sulfur carrier protein ThiS 3664 51.19 0 4301082..4305338 - 1418 145600987 - YPDSF_3744 - DNA-directed RNA polymerase subunit beta' 3665 49.37 0 4305431..4309459 - 1342 145600988 rpoB YPDSF_3745 - DNA-directed RNA polymerase subunit beta 3666 46.88 0 4309802..4310170 - 122 145600989 rplL YPDSF_3746 - 50S ribosomal protein L7/L12 3667 49.40 0 4310237..4310734 - 165 145600990 rplJ YPDSF_3747 - 50S ribosomal protein L10 3668 47.23 0 4311099..4311803 - 234 145600991 rplA YPDSF_3748 - 50S ribosomal protein L1 3669 48.72 0 4311807..4312235 - 142 145600992 rplK YPDSF_3749 - 50S ribosomal protein L11 3670 48.72 0 4312426..4312971 - 181 145600993 nusG YPDSF_3750 - transcription antitermination protein NusG 3671 48.70 0 4312973..4313356 - 127 145600994 secE YPDSF_3751 - preprotein translocase subunit SecE 3672 48.02 0 4313607..4314791 - 394 145600995 - YPDSF_3752 - elongation factor Tu 3673 50.00 0 4315848..4316033 - 61 145600996 - YPDSF_3753 - IS100 transposase 3674 51.27 0 4316116..4316628 - 170 145600997 - YPDSF_3754 - IS100 transposase 3675 52.79 0 4316628..4317650 - 340 145600998 - YPDSF_3755 - transposase for insertion sequence IS100 3676 47.75 0 4318267..4319730 - 487 145600999 - YPDSF_3756 - hypothetical protein 3677 48.26 0 4319942..4320142 + 66 145601000 - YPDSF_3757 - hypothetical protein 3678 49.00 0 4320198..4321601 - 467 145601001 - YPDSF_3758 - amino acid permease 3679 50.75 0 4322019..4323551 - 510 145601002 - YPDSF_3759 - histidine ammonia-lyase 3680 51.24 0 4323548..4325239 - 563 145601003 - YPDSF_3760 - urocanate hydratase 3681 37.57 -2 4325966..4326910 + 314 145601004 - YPDSF_3761 - pyridoxal-phosphate dependent protein 3682 36.33 -2 4326907..4327473 + 188 145601005 - YPDSF_3762 - adenine phosphoribosyltransferase 3683 41.08 -1 4327556..4328485 + 309 145601006 - YPDSF_3763 - hypothetical protein 3684 45.54 0 4328487..4329731 + 414 145601007 - YPDSF_3764 - hypothetical protein 3685 47.69 0 4330254..4331207 + 317 145601008 - YPDSF_3765 - iron transport protein 3686 49.90 0 4331217..4332176 + 319 145601009 - YPDSF_3766 - iron transport permease 3687 46.23 0 4332166..4333173 + 335 145601010 - YPDSF_3767 - iron transport permease 3688 44.01 0 4333170..4333928 + 252 145601011 - YPDSF_3768 - iron ABC transporter, ATP-binding protein 3689 39.78 -1 4334661..4334846 - 61 145601012 - YPDSF_3770 - hypothetical protein 3690 43.80 0 4335778..4336140 + 120 145601013 - YPDSF_3771 - regulator 3691 53.29 +1 4336333..4336818 + 161 145601014 - YPDSF_3772 - transposase 3692 49.66 0 4336818..4337111 + 97 145601015 - YPDSF_3773 - hypothetical protein 3693 31.43 -2 4337798..4339270 - 490 145601016 - YPDSF_3774 - hypothetical protein 3694 45.98 0 4339164..4340357 - 397 145601017 - YPDSF_3775 - phage integrase 3695 48.41 0 4340743..4341936 - 397 145601018 - YPDSF_3776 - AraC family transcription regulator 3696 52.07 0 4342026..4343210 - 394 145601019 - YPDSF_3777 - sugar transport system permease protein 3697 48.40 0 4343197..4344729 - 510 145601020 - YPDSF_3778 - xylose transporter ATP-binding subunit 3698 41.97 -1 4344937..4345932 - 331 145601021 xylF YPDSF_3779 - D-xylose transporter subunit XylF 3699 48.79 0 4346395..4347714 + 439 145601022 - YPDSF_3780 - xylose isomerase 3700 52.99 +1 4347838..4349292 + 484 145601023 - YPDSF_3781 - xylulose kinase 3701 41.54 -1 4349410..4350396 - 328 145601024 - YPDSF_3782 - hypothetical protein 3702 42.71 -1 4350435..4351202 - 255 145601025 - YPDSF_3783 - fimbrial chaperone 3703 49.06 0 4351295..4351930 - 211 145601026 - YPDSF_3784 - outer membrane fimbrial usher porin 3704 44.81 0 4351956..4353785 - 609 145601027 - YPDSF_3785 - hypothetical protein 3705 46.06 0 4353861..4354418 - 185 145601028 - YPDSF_3786 - fimbrial protein 3706 46.42 0 4355295..4356287 - 330 145601029 - YPDSF_3787 - hypothetical protein 3707 49.19 0 4356491..4357165 + 224 145601030 - YPDSF_3788 - insertion element IS1661 DNA-binding protein 3708 46.44 0 4357219..4358004 + 261 145601031 - YPDSF_3789 - transposase for insertion sequence IS1661 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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