version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3570 50.48 0 4188218..4188532 + 104 145600893 - YPDSF_3646 - hypothetical protein 3571 56.83 +1 4188779..4189327 - 182 145600894 - YPDSF_3647 - single-strand DNA-binding protein 3572 51.97 0 4189785..4192628 + 947 145600895 uvrA YPDSF_3648 - excinuclease ABC subunit A 3573 46.94 0 4192721..4193080 - 119 145600896 - YPDSF_3649 - hypothetical protein 3574 50.50 0 4193607..4194800 - 397 145600897 - YPDSF_3650 - aromatic amino acid aminotransferase 3575 54.63 +1 4194986..4196065 - 359 145600898 alr YPDSF_3651 - alanine racemase 3576 52.10 0 4196162..4197568 - 468 145600899 - YPDSF_3652 - replicative DNA helicase 3577 54.27 +1 4197900..4198883 + 327 145600900 - YPDSF_3653 - quinone oxidoreductase, NADPH-dependent 3578 44.75 0 4199228..4199446 - 72 145600901 pspG YPDSF_3654 - phage shock protein G 3579 51.93 0 4199962..4200999 - 345 145600902 - YPDSF_3655 - tRNA-dihydrouridine synthase A 3580 48.15 0 4201251..4201763 + 170 145600903 - YPDSF_3656 - zinc uptake transcriptional repressor 3581 50.57 0 4201944..4202552 - 202 145600904 - YPDSF_3657 - LexA repressor 3582 47.58 0 4202677..4203048 - 123 145600905 - YPDSF_3658 - diacylglycerol kinase 3583 50.16 0 4203176..4205653 + 825 145600906 - YPDSF_3659 - glycerol-3-phosphate acyltransferase 3584 48.44 0 4205834..4206700 - 288 145600907 ubiA YPDSF_3660 - 4-hydroxybenzoate octaprenyltransferase 3585 50.86 0 4206866..4207390 - 174 145600908 ubiC YPDSF_3661 - chorismate pyruvate lyase 3586 50.27 0 4208222..4210777 + 851 145600909 - YPDSF_3662 - hypothetical protein 3587 59.09 +2 4210777..4212030 + 417 145600910 - YPDSF_3663 - Outer membrane autotransporter barrel 3588 48.06 0 4212374..4214431 - 685 145600911 - YPDSF_3664 - oxidoreductase 3589 53.11 +1 4215440..4216759 - 439 145600912 - YPDSF_3665 - hypothetical protein 3590 43.92 0 4217952..4218206 - 84 145600913 - YPDSF_3666 - membrane protein 3591 43.55 0 4218217..4218960 - 247 145600914 - YPDSF_3667 - putative periplasmic chaperone protein 3592 46.20 0 4219032..4221410 - 792 145600915 - YPDSF_3668 - outer membrane fimbrial usher protein 3593 46.95 0 4221661..4222299 - 212 145600916 - YPDSF_3669 - hypothetical protein 3594 46.53 0 4223012..4223587 - 191 145600917 - YPDSF_3670 - tellurium resistance protein 3595 48.19 0 4223771..4224349 - 192 145600918 - YPDSF_3671 - tellurium resistance protein 3596 48.46 0 4224413..4225450 - 345 145600919 - YPDSF_3672 - tellurium resistance protein 3597 46.71 0 4225472..4225927 - 151 145600920 - YPDSF_3673 - tellurite resistance protein 3598 51.90 0 4225960..4227144 - 394 145600921 - YPDSF_3674 - tellurite resistance protein 3599 49.66 0 4227144..4227737 - 197 145600922 - YPDSF_3675 - tellurium resistance protein 3600 49.06 0 4228013..4229074 + 353 145600923 - YPDSF_3676 - hypothetical protein 3601 53.21 +1 4229086..4230222 + 378 145600924 - YPDSF_3677 - hypothetical protein 3602 49.82 0 4230215..4231027 + 270 145600925 - YPDSF_3678 - hypothetical protein 3603 52.50 0 4231020..4232099 + 359 145600926 - YPDSF_3679 - hypothetical protein 3604 48.75 0 4232099..4233058 + 319 145600927 - YPDSF_3680 - ATP/GTP-binding protein 3605 47.65 0 4233455..4233943 + 162 145600928 - YPDSF_3681 - hypothetical protein 3606 36.70 -2 4234495..4235058 + 187 145600929 - YPDSF_3682 - methylenetetrahydrofolate reductase 3607 50.99 0 4235399..4236712 + 437 145600930 - YPDSF_3683 - coproporphyrinogen III oxidase 3608 48.76 0 4236709..4237272 + 187 145600931 - YPDSF_3684 - hypothetical protein 3609 53.46 +1 4237306..4237956 + 216 145600932 - YPDSF_3685 - hypothetical protein 3610 45.83 0 4238042..4238233 + 63 145600933 - YPDSF_3686 - hemin uptake protein hemp 3611 50.76 0 4238363..4240393 + 676 145600934 - YPDSF_3687 - hemin receptor precursor 3612 50.58 0 4240512..4241549 + 345 145600935 - YPDSF_3688 - hemin transport protein 3613 53.33 +1 4241546..4242385 + 279 145600936 - YPDSF_3689 - hemin-binding periplasmic protein 3614 55.62 +1 4242382..4243386 + 334 145600937 - YPDSF_3690 - hemin transport system permease protein HmuU 3615 53.81 +1 4243379..4244179 + 266 145600938 - YPDSF_3691 - hemin importer ATP-binding subunit 3616 45.43 0 4244320..4245501 - 393 145600939 - YPDSF_3692 - cystathionine beta-lyase 3617 39.24 -1 4245547..4246833 - 428 145600940 - YPDSF_3693 - transmembrane transport protein 3618 38.41 -2 4247003..4247986 + 327 145600941 - YPDSF_3694 - LysR family transcriptional regulator 3619 54.81 +1 4248064..4248333 - 89 145600942 - YPDSF_3695 - hypothetical protein 3620 52.59 0 4248330..4249544 - 404 145600943 - YPDSF_3696 - putative inner membrane protein 3621 48.97 0 4249927..4250994 - 355 145600944 - YPDSF_3697 - secretion system apparatus protein SsaU 3622 51.57 0 4250984..4251778 - 264 145600945 - YPDSF_3698 - type III secretion apparatus protein 3623 47.62 0 4251780..4252073 - 97 145600946 - YPDSF_3699 - type III secretion apparatus protein 3624 45.15 0 4252070..4252780 - 236 145600947 - YPDSF_3700 - type III secretion system protein 3625 54.62 +1 4252847..4253809 - 320 145600948 - YPDSF_3701 - type III secretion system protein 3626 50.13 0 4253787..4254185 - 132 145600949 - YPDSF_3702 - hypothetical protein 3627 56.72 +1 4254166..4254567 - 133 145600950 - YPDSF_3703 - type III secretion system apparatus protein 3628 57.39 +1 4254564..4255910 - 448 145600951 - YPDSF_3704 - type III secretion system ATPase 3629 51.98 0 4255888..4257903 - 671 145600952 - YPDSF_3705 - secretion system apparatus protein SsaV 3630 55.09 +1 4257929..4258576 - 215 145600953 - YPDSF_3706 - type III secretion system apparatus protein 3631 54.44 +1 4258573..4259169 - 198 145600954 - YPDSF_3707 - hypothetical protein 3632 49.04 0 4259341..4260072 - 243 145600955 - YPDSF_3708 - type III secretion system apparatus lipoprotein 3633 49.60 0 4260069..4260320 - 83 145600956 - YPDSF_3709 - type III secretion apparatus 3634 55.42 +1 4260418..4260666 - 82 145600957 - YPDSF_3710 - type III secretion apparatus 3635 41.67 -1 4260888..4261595 - 235 145600958 - YPDSF_3711 - AraC family transcription regulator 3636 39.64 -1 4261702..4261923 - 73 145600959 - YPDSF_3712 - type III secretion apparatus 3637 46.83 0 4261942..4263156 - 404 145600960 - YPDSF_3713 - type-III secretion protein 3638 43.74 0 4263158..4264675 - 505 145600961 - YPDSF_3714 - type III secretion protein 3639 46.99 0 4264901..4267720 + 939 145600962 - YPDSF_3715 - two-component sensor/regulator 3640 45.02 0 4267733..4268365 + 210 145600963 - YPDSF_3716 - two-component response regulator 3641 43.36 0 4268543..4269859 - 438 145600964 gltP YPDSF_3717 - glutamate/aspartate:proton symporter 3642 47.73 0 4270714..4272672 + 652 145600965 - YPDSF_3718 - acetyl-CoA synthetase 3643 41.67 -1 4272729..4273040 + 103 145600966 - YPDSF_3719 - hypothetical protein 3644 47.10 0 4273037..4274692 + 551 145600967 actP YPDSF_3720 - acetate permease 3645 45.49 0 4274766..4275752 - 328 145600968 - YPDSF_3721 - hypothetical protein 3646 52.79 0 4275811..4276833 + 340 145600969 - YPDSF_3722 - transposase 3647 50.38 0 4276833..4277612 + 259 145600970 - YPDSF_3723 - transposase/IS protein 3648 49.34 0 4278277..4279032 - 251 145600971 - YPDSF_3724 - transposase 3649 47.94 0 4279110..4279376 - 88 145600972 - YPDSF_3725 - helix-turn-helix, Fis-type 3650 51.38 0 4285640..4287229 + 529 145600973 purH YPDSF_3726 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3651 51.67 0 4287289..4288575 + 428 145600974 - YPDSF_3727 - phosphoribosylamine--glycine ligase 3652 53.21 +1 4288742..4289395 - 217 145600975 - YPDSF_3728 - hypothetical protein 3653 45.29 0 4289445..4289720 - 91 145600976 - YPDSF_3729 - transcriptional regulator HU subunit alpha 3654 44.16 0 4289909..4290499 - 196 145600977 - YPDSF_3730 - hypothetical protein 3655 51.96 0 4290545..4291285 - 246 145600978 - YPDSF_3731 - endonuclease V 3656 51.22 0 4291315..4292382 - 355 145600979 hemE YPDSF_3732 - uroporphyrinogen decarboxylase 3657 41.40 -1 4292501..4293244 - 247 145600980 - YPDSF_3733 - hypothetical protein 3658 49.68 0 4293379..4294161 - 260 145600981 nudC YPDSF_3734 - NADH pyrophosphatase 3659 45.02 0 4294246..4294767 + 173 145600982 - YPDSF_3735 - anti-RNA polymerase sigma 70 factor 3660 51.81 0 4295143..4297188 + 681 145600983 - YPDSF_3736 - thiamine biosynthesis protein ThiC 3661 53.33 +1 4297175..4297849 + 224 145600984 - YPDSF_3737 - thiamine-phosphate pyrophosphorylase 3662 54.01 +1 4297839..4298636 + 265 145600985 - YPDSF_3738 - thiamine biosynthesis protein ThiF 3663 49.54 0 4298633..4298848 + 71 145600986 - YPDSF_3739 - sulfur carrier protein ThiS 3664 51.19 0 4301082..4305338 - 1418 145600987 - YPDSF_3744 - DNA-directed RNA polymerase subunit beta' 3665 49.37 0 4305431..4309459 - 1342 145600988 rpoB YPDSF_3745 - DNA-directed RNA polymerase subunit beta 3666 46.88 0 4309802..4310170 - 122 145600989 rplL YPDSF_3746 - 50S ribosomal protein L7/L12 3667 49.40 0 4310237..4310734 - 165 145600990 rplJ YPDSF_3747 - 50S ribosomal protein L10 3668 47.23 0 4311099..4311803 - 234 145600991 rplA YPDSF_3748 - 50S ribosomal protein L1 3669 48.72 0 4311807..4312235 - 142 145600992 rplK YPDSF_3749 - 50S ribosomal protein L11 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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