IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
313	 50.65	0	359434..360507	-	357	145597636	-	YPDSF_0320	-	D-arabinose 5-phosphate isomerase
314	 49.85	0	360531..361505	-	324	145597637	-	YPDSF_0321	-	putative calcium/sodium:proton antiporter
315	 49.21	0	361770..362588	+	272	145597638	-	YPDSF_0322	-	putative ABC transporter ATP-binding protein YrbF
316	 50.45	0	362806..363588	+	260	145597639	-	YPDSF_0323	-	hypothetical protein
317	 48.03	0	363593..364150	+	185	145597640	-	YPDSF_0324	-	hypothetical protein
318	 48.24	0	364163..364786	+	207	145597641	-	YPDSF_0325	-	hypothetical protein
319	 49.83	0	364822..365124	+	100	145597642	-	YPDSF_0326	-	anti-sigma B factor antagonist
320	 44.70	0	365262..365525	+	87	145597643	-	YPDSF_0327	-	BolA-like protein
321	 50.51	0	365679..366941	+	420	145597644	-	YPDSF_0328	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
322	 47.83	0	367122..368273	-	383	145597645	-	YPDSF_0329	-	serine endoprotease
323	 45.97	0	368436..368894	+	152	145597646	-	YPDSF_0330	-	transposase for the IS1541 insertion element
324	 48.76	0	369011..370384	-	457	145597647	-	YPDSF_0331	-	protease
325	 48.15	0	370655..371059	-	134	145597648	-	YPDSF_0332	-	cytochrome d ubiquinol oxidase subunit III
326	 49.73	0	371283..372410	+	375	145597649	-	YPDSF_0333	-	hypothetical protein
327	 49.65	0	372723..373151	+	142	145597650	rplM	YPDSF_0334	-	50S ribosomal protein L13
328	 49.36	0	373166..373558	+	130	145597651	rpsI	YPDSF_0335	-	30S ribosomal protein S9
329	 48.75	0	373932..374573	+	213	145597652	sspA	YPDSF_0336	-	stringent starvation protein A
330	 50.97	0	374579..375094	+	171	145597653	-	YPDSF_0337	-	ClpXP protease specificity-enhancing factor
331	 47.33	0	375247..375732	-	161	145597654	-	YPDSF_0338	-	hypothetical protein
332	 51.37	0	376173..377591	-	472	145597