IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3561	 48.70	0	4180006..4181040	+	344	145600884	-	YPDSF_3637	-	rhamnose-proton symporter
3562	 37.33	-2	4181015..4181164	+	49	145600885	-	YPDSF_3638	-	hypothetical protein
3563	 49.03	0	4181189..4182061	-	290	145600886	-	YPDSF_3639	-	transcriptional activator RhaR
3564	 47.81	0	4182194..4183015	-	273	145600887	-	YPDSF_3640	-	transcriptional activator RhaS
3565	 43.09	-1	4183019..4183141	+	40	145600888	-	YPDSF_3641	-	hypothetical protein
3566	 52.85	+1	4183271..4184899	+	542	145600889	rhaB	YPDSF_3642	-	rhamnulokinase
3567	 52.90	+1	4184896..4186152	+	418	145600890	-	YPDSF_3643	-	L-rhamnose isomerase
3568	 53.09	+1	4186165..4186989	+	274	145600891	-	YPDSF_3644	-	rhamnulose-1-phosphate aldolase
3569	 51.09	0	4187056..4188204	+	382	145600892	-	YPDSF_3645	-	alcohol dehydrogenase
3570	 50.48	0	4188218..4188532	+	104	145600893	-	YPDSF_3646	-	hypothetical protein
3571	 56.83	+1	4188779..4189327	-	182	145600894	-	YPDSF_3647	-	single-strand DNA-binding protein
3572	 51.97	0	4189785..4192628	+	947	145600895	uvrA	YPDSF_3648	-	excinuclease ABC subunit A
3573	 46.94	0	4192721..4193080	-	119	145600896	-	YPDSF_3649	-	hypothetical protein
3574	 50.50	0	4193607..4194800	-	397	145600897	-	YPDSF_3650	-	aromatic amino acid aminotransferase
3575	 54.63	+1	4194986..4196065	-	359	145600898	alr	YPDSF_3651	-	alanine racemase
3576	 52.10	0	4196162..4197568	-	468	145600899	-	YPDSF_3652	-	replicative DNA helicase
3577	 54.27	+1	4197900..4198883	+	327	145600900	-	YPDSF_3653	-	quinone oxidoreductase, NADPH-dependent
3578	 44.75	0	4199228..4199446	-	72	145600901	pspG	YPDSF_3654	-	phage shock protein G
3579	 51.93	0	4199962..4200999	-	345	145600902	-	YPDSF_3655	-	tRNA-dihydrouridine synthase A
3580	 48.15	0	4201251..4201763	+	170	145600903	-	YPDSF_3656	-	zinc uptake transcriptional repressor
3581	 50.57	0	4201944..4202552	-	202	145600904	-	YPDSF_3657	-	LexA repressor
3582	 47.58	0	4202677..4203048	-	123	145600905	-	YPDSF_3658	-	diacylglycerol kinase
3583	 50.16	0	4203176..4205653	+	825	145600906	-	YPDSF_3659	-	glycerol-3-phosphate acyltransferase
3584	 48.44	0	4205834..4206700	-	288	145600907	ubiA	YPDSF_3660	-	4-hydroxybenzoate octaprenyltransferase
3585	 50.86	0	4206866..4207390	-	174	145600908	ubiC	YPDSF_3661	-	chorismate pyruvate lyase
3586	 50.27	0	4208222..4210777	+	851	145600909	-	YPDSF_3662	-	hypothetical protein
3587	 59.09	+2	4210777..4212030	+	417	145600910	-	YPDSF_3663	-	Outer membrane autotransporter barrel
3588	 48.06	0	4212374..4214431	-	685	145600911	-	YPDSF_3664	-	oxidoreductase
3589	 53.11	+1	4215440..4216759	-	439	145600912	-	YPDSF_3665	-	hypothetical protein
3590	 43.92	0	4217952..4218206	-	84	145600913	-	YPDSF_3666	-	membrane protein
3591	 43.55	0	4218217..4218960	-	247	145600914	-	YPDSF_3667	-	putative periplasmic chaperone protein
3592	 46.20	0	4219032..4221410	-	792	145600915	-	YPDSF_3668	-	outer membrane fimbrial usher protein
3593	 46.95	0	4221661..4222299	-	212	145600916	-	YPDSF_3669	-	hypothetical protein
3594	 46.53	0	4223012..4223587	-	191	145600917	-	YPDSF_3670	-	tellurium resistance protein
3595	 48.19	0	4223771..4224349	-	192	145600918	-	YPDSF_3671	-	tellurium resistance protein
3596	 48.46	0	4224413..4225450	-	345	145600919	-	YPDSF_3672	-	tellurium resistance protein
3597	 46.71	0	4225472..4225927	-	151	145600920	-	YPDSF_3673	-	tellurite resistance protein
3598	 51.90	0	4225960..4227144	-	394	145600921	-	YPDSF_3674	-	tellurite resistance protein
3599	 49.66	0	4227144..4227737	-	197	145600922	-	YPDSF_3675	-	tellurium resistance protein
3600	 49.06	0	4228013..4229074	+	353	145600923	-	YPDSF_3676	-	hypothetical protein
3601	 53.21	+1	4229086..4230222	+	378	145600924	-	YPDSF_3677	-	hypothetical protein
3602	 49.82	0	4230215..4231027	+	270	145600925	-	YPDSF_3678	-	hypothetical protein
3603	 52.50	0	4231020..4232099	+	359	145600926	-	YPDSF_3679	-	hypothetical protein
3604	 48.75	0	4232099..4233058	+	319	145600927	-	YPDSF_3680	-	ATP/GTP-binding protein
3605	 47.65	0	4233455..4233943	+	162	145600928	-	YPDSF_3681	-	hypothetical protein
3606	 36.70	-2	4234495..4235058	+	187	145600929	-	YPDSF_3682	-	methylenetetrahydrofolate reductase
3607	 50.99	0	4235399..4236712	+	437	145600930	-	YPDSF_3683	-	coproporphyrinogen III oxidase
3608	 48.76	0	4236709..4237272	+	187	145600931	-	YPDSF_3684	-	hypothetical protein
3609	 53.46	+1	4237306..4237956	+	216	145600932	-	YPDSF_3685	-	hypothetical protein
3610	 45.83	0	4238042..4238233	+	63	145600933	-	YPDSF_3686	-	hemin uptake protein hemp
3611	 50.76	0	4238363..4240393	+	676	145600934	-	YPDSF_3687	-	hemin receptor precursor
3612	 50.58	0	4240512..4241549	+	345	145600935	-	YPDSF_3688	-	hemin transport protein
3613	 53.33	+1	4241546..4242385	+	279	145600936	-	YPDSF_3689	-	hemin-binding periplasmic protein
3614	 55.62	+1	4242382..4243386	+	334	145600937	-	YPDSF_3690	-	hemin transport system permease protein HmuU
3615	 53.81	+1	4243379..4244179	+	266	145600938	-	YPDSF_3691	-	hemin importer ATP-binding subunit
3616	 45.43	0	4244320..4245501	-	393	145600939	-	YPDSF_3692	-	cystathionine beta-lyase
3617	 39.24	-1	4245547..4246833	-	428	145600940	-	YPDSF_3693	-	transmembrane transport protein
3618	 38.41	-2	4247003..4247986	+	327	145600941	-	YPDSF_3694	-	LysR family transcriptional regulator
3619	 54.81	+1	4248064..4248333	-	89	145600942	-	YPDSF_3695	-	hypothetical protein
3620	 52.59	0	4248330..4249544	-	404	145600943	-	YPDSF_3696	-	putative inner membrane protein
3621	 48.97	0	4249927..4250994	-	355	145600944	-	YPDSF_3697	-	secretion system apparatus protein SsaU
3622	 51.57	0	4250984..4251778	-	264	145600945	-	YPDSF_3698	-	type III secretion apparatus protein
3623	 47.62	0	4251780..4252073	-	97	145600946	-	YPDSF_3699	-	type III secretion apparatus protein
3624	 45.15	0	4252070..4252780	-	236	145600947	-	YPDSF_3700	-	type III secretion system protein
3625	 54.62	+1	4252847..4253809	-	320	145600948	-	YPDSF_3701	-	type III secretion system protein
3626	 50.13	0	4253787..4254185	-	132	145600949	-	YPDSF_3702	-	hypothetical protein
3627	 56.72	+1	4254166..4254567	-	133	145600950	-	YPDSF_3703	-	type III secretion system apparatus protein
3628	 57.39	+1	4254564..4255910	-	448	145600951	-	YPDSF_3704	-	type III secretion system ATPase
3629	 51.98	0	4255888..4257903	-	671	145600952	-	YPDSF_3705	-	secretion system apparatus protein SsaV
3630	 55.09	+1	4257929..4258576	-	215	145600953	-	YPDSF_3706	-	type III secretion system apparatus protein
3631	 54.44	+1	4258573..4259169	-	198	145600954	-	YPDSF_3707	-	hypothetical protein
3632	 49.04	0	4259341..4260072	-	243	145600955	-	YPDSF_3708	-	type III secretion system apparatus lipoprotein
3633	 49.60	0	4260069..4260320	-	83	145600956	-	YPDSF_3709	-	type III secretion apparatus
3634	 55.42	+1	4260418..4260666	-	82	145600957	-	YPDSF_3710	-	type III secretion apparatus
3635	 41.67	-1	4260888..4261595	-	235	145600958	-	YPDSF_3711	-	AraC family transcription regulator
3636	 39.64	-1	4261702..4261923	-	73	145600959	-	YPDSF_3712	-	type III secretion apparatus
3637	 46.83	0	4261942..4263156	-	404	145600960	-	YPDSF_3713	-	type-III secretion protein
3638	 43.74	0	4263158..4264675	-	505	145600961	-	YPDSF_3714	-	type III secretion protein
3639	 46.99	0	4264901..4267720	+	939	145600962	-	YPDSF_3715	-	two-component sensor/regulator
3640	 45.02	0	4267733..4268365	+	210	145600963	-	YPDSF_3716	-	two-component response regulator
3641	 43.36	0	4268543..4269859	-	438	145600964	gltP	YPDSF_3717	-	glutamate/aspartate:proton symporter
3642	 47.73	0	4270714..4272672	+	652	145600965	-	YPDSF_3718	-	acetyl-CoA synthetase
3643	 41.67	-1	4272729..4273040	+	103	145600966	-	YPDSF_3719	-	hypothetical protein
3644	 47.10	0	4273037..4274692	+	551	145600967	actP	YPDSF_3720	-	acetate permease
3645	 45.49	0	4274766..4275752	-	328	145600968	-	YPDSF_3721	-	hypothetical protein
3646	 52.79	0	4275811..4276833	+	340	145600969	-	YPDSF_3722	-	transposase
3647	 50.38	0	4276833..4277612	+	259	145600970	-	YPDSF_3723	-	transposase/IS protein
3648	 49.34	0	4278277..4279032	-	251	145600971	-	YPDSF_3724	-	transposase
3649	 47.94	0	4279110..4279376	-	88	145600972	-	YPDSF_3725	-	helix-turn-helix, Fis-type
3650	 51.38	0	4285640..4287229	+	529	145600973	purH	YPDSF_3726	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3651	 51.67	0	4287289..4288575	+	428	145600974	-	YPDSF_3727	-	phosphoribosylamine--glycine ligase
3652	 53.21	+1	4288742..4289395	-	217	145600975	-	YPDSF_3728	-	hypothetical protein
3653	 45.29	0	4289445..4289720	-	91	145600976	-	YPDSF_3729	-	transcriptional regulator HU subunit alpha
3654	 44.16	0	4289909..4290499	-	196	145600977	-	YPDSF_3730	-	hypothetical protein
3655	 51.96	0	4290545..4291285	-	246	145600978	-	YPDSF_3731	-	endonuclease V
3656	 51.22	0	4291315..4292382	-	355	145600979	hemE	YPDSF_3732	-	uroporphyrinogen decarboxylase
3657	 41.40	-1	4292501..4293244	-	247	145600980	-	YPDSF_3733	-	hypothetical protein
3658	 49.68	0	4293379..4294161	-	260	145600981	nudC	YPDSF_3734	-	NADH pyrophosphatase
3659	 45.02	0	4294246..4294767	+	173	145600982	-	YPDSF_3735	-	anti-RNA polymerase sigma 70 factor
3660	 51.81	0	4295143..4297188	+	681	145600983	-	YPDSF_3736	-	thiamine biosynthesis protein ThiC
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.