IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3490	 45.22	0	4097641..4098111	+	156	145600813	-	YPDSF_3566	-	arginine repressor
3491	 40.91	-1	4098500..4098763	+	87	145600814	-	YPDSF_3567	-	hypothetical protein
3492	 50.04	0	4099059..4100441	-	460	145600815	-	YPDSF_3568	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
3493	 46.55	0	4100612..4101625	+	337	145600816	-	YPDSF_3569	-	fructose-1,6-bisphosphatase
3494	 46.78	0	4101825..4102352	+	175	145600817	-	YPDSF_3570	-	inorganic pyrophosphatase
3495	 45.94	0	4102470..4102826	-	118	145600818	-	YPDSF_3571	-	hypothetical protein
3496	 52.35	0	4102829..4106725	-	1298	145600819	-	YPDSF_3572	-	hypothetical protein
3497	 51.35	0	4106722..4108458	-	578	145600820	-	YPDSF_3573	-	hypothetical protein
3498	 53.21	+1	4108733..4109371	+	212	145600821	-	YPDSF_3574	-	methionine sulfoxide reductase A
3499	 46.25	0	4109630..4110961	+	443	145600822	-	YPDSF_3575	-	hypothetical protein
3500	 45.54	0	4111069..4111281	-	70	145600823	-	YPDSF_3576	-	hypothetical protein
3501	 45.92	0	4111617..4112180	+	187	145600824	-	YPDSF_3577	-	hypothetical protein
3502	 53.71	+1	4112183..4112923	-	246	145600825	-	YPDSF_3578	-	PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
3503	 48.39	0	4113370..4115328	+	652	145600826	cpdB	YPDSF_3579	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
3504	 48.80	0	4115483..4116148	+	221	145600827	-	YPDSF_3580	-	cell morphogenesis/cell wall metabolism regulator
3505	 52.01	0	4116246..4116866	-	206	145600828	-	YPDSF_3581	-	peptidyl-prolyl cis-trans isomerase
3506	 51.28	0	4117224..4117964	+	246	145600829	-	YPDSF_3582	-	hypothetical protein
3507	 45.18	0	4118104..4118559	+	151	145600830	-	YPDSF_3583	-	hypothetical protein
3508	 45.97	0	4118681..4119139	-	152	145600831	-	YPDSF_3584	-	transposase for the IS1541 insertion element
3509	 49.45	0	4119335..4119787	-	150	145600832	rplI	YPDSF_3585	-	50S ribosomal protein L9
3510	 47.37	0	4119827..4120054	-	75	145600833	rpsR	YPDSF_3586	-	30S ribosomal protein S18
3511	 51.15	0	4120385..4120777	-	130	145600834	rpsF	YPDSF_3587	-	30S ribosomal protein S6
3512	 50.27	0	4121144..4121887	-	247	145600835	-	YPDSF_3588	-	esterase
3513	 50.38	0	4121926..4122705	-	259	145600836	-	YPDSF_3589	-	transposase/IS protein
3514	 52.79	0	4122705..4123727	-	340	145600837	-	YPDSF_3590	-	transposase
3515	 50.64	0	4124044..4124355	+	103	145600838	-	YPDSF_3591	-	lipoprotein
3516	 53.10	+1	4124427..4126070	-	547	145600839	-	YPDSF_3592	-	isovaleryl CoA dehydrogenase
3517	 53.85	+1	4126478..4127218	-	246	145600840	-	YPDSF_3593	-	23S rRNA (guanosine-2'-O-)-methyltransferase
3518	 52.34	0	4127347..4129872	-	841	145600841	-	YPDSF_3594	-	exoribonuclease R
3519	 44.73	0	4130113..4130577	-	154	145600842	-	YPDSF_3595	-	transcriptional repressor NsrR
3520	 50.96	0	4130887..4132185	-	432	145600843	-	YPDSF_3596	-	adenylosuccinate synthetase
3521	 48.76	0	4132285..4132485	-	66	145600844	-	YPDSF_3597	-	membrane protein
3522	 50.25	0	4132657..4133661	-	334	145600845	-	YPDSF_3598	-	FtsH protease regulator HflC
3523	 50.32	0	4133665..4134924	-	419	145600846	-	YPDSF_3599	-	FtsH protease regulator HflK
3524	 49.26	0	4135165..4136451	-	428	145600847	-	YPDSF_3600	-	putative GTPase HflX
3525	 46.08	0	4136550..4136855	-	101	145600848	hfq	YPDSF_3601	-	RNA-binding protein Hfq
3526	 51.06	0	4136971..4137912	-	313	145600849	miaA	YPDSF_3602	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3527	 50.37	0	4137905..4139812	-	635	145600850	mutL	YPDSF_3603	-	DNA mismatch repair protein
3528	 50.94	0	4139828..4141741	-	637	145600851	-	YPDSF_3604	-	N-acetylmuramoyl-L-alanine amidase-family protein
3529	 53.72	+1	4141749..4142219	-	156	145600852	-	YPDSF_3605	-	putative ATPase
3530	 53.00	+1	4142230..4143744	-	504	145600853	-	YPDSF_3606	-	hypothetical protein
3531	 51.21	0	4143743..4144978	+	411	145600854	-	YPDSF_3607	-	iron-sulfur cluster-binding protein
3532	 45.91	0	4145923..4146606	-	227	145600855	-	YPDSF_3608	-	oligoribonuclease
3533	 50.33	0	4146668..4147720	+	350	145600856	-	YPDSF_3609	-	ribosome-associated GTPase
3534	 51.94	0	4147907..4148035	-	42	145600857	-	YPDSF_3610	-	hypothetical protein
3535	 50.34	0	4148045..4148926	+	293	145600858	-	YPDSF_3611	-	phosphatidylserine decarboxylase
3536	 52.24	0	4148968..4152309	+	1113	145600859	-	YPDSF_3612	-	hypothetical protein
3537	 49.28	0	4152430..4153407	-	325	145600860	-	YPDSF_3613	-	lysyl-tRNA synthetase
3538	 52.91	+1	4153865..4155688	+	607	145600861	-	YPDSF_3614	-	fumarate reductase flavoprotein subunit
3539	 49.39	0	4155681..4156415	+	244	145600862	-	YPDSF_3615	-	fumarate reductase iron-sulfur subunit
3540	 48.09	0	4156432..4156824	+	130	145600863	-	YPDSF_3616	-	fumarate reductase subunit C
3541	 49.86	0	4156841..4157197	+	118	145600864	-	YPDSF_3617	-	fumarate reductase subunit D
3542	 51.52	0	4157362..4157823	-	153	145600865	-	YPDSF_3618	-	chaperone
3543	 48.50	0	4157923..4158489	-	188	145600866	-	YPDSF_3619	-	elongation factor P
3544	 47.42	0	4158525..4159553	+	342	145600867	-	YPDSF_3620	-	hypothetical protein
3545	 46.62	0	4159838..4160236	-	132	145600868	-	YPDSF_3621	-	lipoprotein
3546	 50.46	0	4160860..4162506	-	548	145600869	groEL	YPDSF_3622	-	chaperonin GroEL
3547	 48.98	0	4162553..4162846	-	97	145600870	groES	YPDSF_3623	-	co-chaperonin GroES
3548	 45.27	0	4163101..4163703	-	200	145600871	fxsA	YPDSF_3624	-	FxsA
3549	 47.32	0	4164127..4165563	+	478	145600872	aspA	YPDSF_3625	-	aspartate ammonia-lyase
3550	 50.92	0	4165683..4166984	+	433	145600873	-	YPDSF_3626	-	anaerobic C4-dicarboxylate transporter
3551	 49.72	0	4167169..4167528	+	119	145600874	-	YPDSF_3627	-	divalent-cation tolerance protein CutA
3552	 52.24	0	4167504..4169291	+	595	145600875	dipZ	YPDSF_3628	-	thiol:disulfide interchange protein precursor
3553	 53.35	+1	4169353..4171500	-	715	145600876	-	YPDSF_3629	-	formate dehydrogenase H
3554	 56.09	+1	4171523..4172080	-	185	145600877	-	YPDSF_3630	-	4Fe-4S ferrodoxin
3555	 52.93	+1	4172103..4174118	-	671	145600878	-	YPDSF_3631	-	putative oxidoreductase Fe-S binding subunit
3556	 49.83	0	4174538..4175113	+	191	145600879	-	YPDSF_3632	-	putative transcriptional regulator
3557	 34.12	-2	4175767..4178322	-	851	145600880	-	YPDSF_3633	-	enhancing factor
3558	 26.19	-2	4178352..4178519	-	55	145600881	-	YPDSF_3634	-	hypothetical protein
3559	 43.23	-1	4179237..4179539	-	100	145600882	-	YPDSF_3635	-	transposase
3560	 42.80	-1	4179610..4179852	-	80	145600883	-	YPDSF_3636	-	hypothetical protein
3561	 48.70	0	4180006..4181040	+	344	145600884	-	YPDSF_3637	-	rhamnose-proton symporter
3562	 37.33	-2	4181015..4181164	+	49	145600885	-	YPDSF_3638	-	hypothetical protein
3563	 49.03	0	4181189..4182061	-	290	145600886	-	YPDSF_3639	-	transcriptional activator RhaR
3564	 47.81	0	4182194..4183015	-	273	145600887	-	YPDSF_3640	-	transcriptional activator RhaS
3565	 43.09	-1	4183019..4183141	+	40	145600888	-	YPDSF_3641	-	hypothetical protein
3566	 52.85	+1	4183271..4184899	+	542	145600889	rhaB	YPDSF_3642	-	rhamnulokinase
3567	 52.90	+1	4184896..4186152	+	418	145600890	-	YPDSF_3643	-	L-rhamnose isomerase
3568	 53.09	+1	4186165..4186989	+	274	145600891	-	YPDSF_3644	-	rhamnulose-1-phosphate aldolase
3569	 51.09	0	4187056..4188204	+	382	145600892	-	YPDSF_3645	-	alcohol dehydrogenase
3570	 50.48	0	4188218..4188532	+	104	145600893	-	YPDSF_3646	-	hypothetical protein
3571	 56.83	+1	4188779..4189327	-	182	145600894	-	YPDSF_3647	-	single-strand DNA-binding protein
3572	 51.97	0	4189785..4192628	+	947	145600895	uvrA	YPDSF_3648	-	excinuclease ABC subunit A
3573	 46.94	0	4192721..4193080	-	119	145600896	-	YPDSF_3649	-	hypothetical protein
3574	 50.50	0	4193607..4194800	-	397	145600897	-	YPDSF_3650	-	aromatic amino acid aminotransferase
3575	 54.63	+1	4194986..4196065	-	359	145600898	alr	YPDSF_3651	-	alanine racemase
3576	 52.10	0	4196162..4197568	-	468	145600899	-	YPDSF_3652	-	replicative DNA helicase
3577	 54.27	+1	4197900..4198883	+	327	145600900	-	YPDSF_3653	-	quinone oxidoreductase, NADPH-dependent
3578	 44.75	0	4199228..4199446	-	72	145600901	pspG	YPDSF_3654	-	phage shock protein G
3579	 51.93	0	4199962..4200999	-	345	145600902	-	YPDSF_3655	-	tRNA-dihydrouridine synthase A
3580	 48.15	0	4201251..4201763	+	170	145600903	-	YPDSF_3656	-	zinc uptake transcriptional repressor
3581	 50.57	0	4201944..4202552	-	202	145600904	-	YPDSF_3657	-	LexA repressor
3582	 47.58	0	4202677..4203048	-	123	145600905	-	YPDSF_3658	-	diacylglycerol kinase
3583	 50.16	0	4203176..4205653	+	825	145600906	-	YPDSF_3659	-	glycerol-3-phosphate acyltransferase
3584	 48.44	0	4205834..4206700	-	288	145600907	ubiA	YPDSF_3660	-	4-hydroxybenzoate octaprenyltransferase
3585	 50.86	0	4206866..4207390	-	174	145600908	ubiC	YPDSF_3661	-	chorismate pyruvate lyase
3586	 50.27	0	4208222..4210777	+	851	145600909	-	YPDSF_3662	-	hypothetical protein
3587	 59.09	+2	4210777..4212030	+	417	145600910	-	YPDSF_3663	-	Outer membrane autotransporter barrel
3588	 48.06	0	4212374..4214431	-	685	145600911	-	YPDSF_3664	-	oxidoreductase
3589	 53.11	+1	4215440..4216759	-	439	145600912	-	YPDSF_3665	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.