IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
301	 48.29	0	351357..351824	-	155	145597624	-	YPDSF_0308	-	aspartate carbamoyltransferase regulatory subunit
302	 48.40	0	351833..352768	-	311	145597625	pyrB	YPDSF_0309	-	aspartate carbamoyltransferase catalytic subunit
303	 48.72	0	353106..353378	-	90	145597626	-	YPDSF_0310	-	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)
304	 49.59	0	353375..354229	-	284	162202302	-	YPDSF_0311	-	hypothetical protein
305	 45.76	0	354535..355017	-	160	145597628	-	YPDSF_0312	-	sugar-specific enzyme IIA component of PTS
306	 38.51	-1	355135..355308	-	57	145597629	-	YPDSF_0313	-	hypothetical protein
307	 36.11	-2	355315..355422	-	35	145597630	-	YPDSF_0314	-	sigma N modulation factor
308	 48.88	0	355446..356879	-	477	145597631	-	YPDSF_0315	-	RNA polymerase factor sigma-54
309	 49.04	0	356941..357666	-	241	145597632	-	YPDSF_0316	-	putative ABC transporter ATP-binding protein YhbG
310	 44.32	0	357673..358218	-	181	145597633	-	YPDSF_0317	-	hypothetical protein
311	 45.74	0	358202..358765	-	187	145597634	-	YPDSF_0318	-	hypothetical protein
312	 49.11	0	358762..359325	-	187	145597635	-	YPDSF_0319	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
313	 50.65	0	359434..360507	-	357	145597636	-	YPDSF_0320	-	D-arabinose 5-phosphate isomerase
314	 49.85	0	360531..361505	-	324	145597637	-	YPDSF_0321	-	putative calcium/sodium:proton antiporter
315	 49.21	0	361770..362588	+	272	145597638	-	YPDSF_0322	-	putative ABC transporter ATP-binding protein YrbF
316	 50.45	0	362806..363588	+	260	145597639	-	YPDSF_0323	-	hypothetical protein
317	 48.03	0	363593..364150	+	185	145597640	-	YPDSF_0324	-	hypothetical protein
318	 48.24	0	364163..364786	+	207	145597641	-	YPDSF_0325	-	hypothetical protein
319	 49.83	0	364822..365124	+	100	145597642	-	YPDSF_0326	-	anti-sigma B factor antagonist
320	 44.70	0	365262..365525	+	87	145597643	-	YPDSF_0327	-	BolA-like protein
321	 50.51	0	365679..366941	+	420	145597644	-	YPDSF_0328	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
322	 47.83	0	367122..368273	-	383	145597645	-	YPDSF_0329	-	serine endoprotease
323	 45.97	0	368436..368894	+	152	145597646	-	YPDSF_0330	-	transposase for the IS1541 insertion element
324	 48.76	0	369011..370384	-	457	145597647	-	YPDSF_0331	-	protease
325	 48.15	0	370655..371059	-	134	145597648	-	YPDSF_0332	-	cytochrome d ubiquinol oxidase subunit III
326	 49.73	0	371283..372410	+	375	145597649	-	YPDSF_0333	-	hypothetical protein
327	 49.65	0	372723..373151	+	142	145597650	rplM	YPDSF_0334	-	50S ribosomal protein L13
328	 49.36	0	373166..373558	+	130	145597651	rpsI	YPDSF_0335	-	30S ribosomal protein S9
329	 48.75	0	373932..374573	+	213	145597652	sspA	YPDSF_0336	-	stringent starvation protein A
330	 50.97	0	374579..375094	+	171	145597653	-	YPDSF_0337	-	ClpXP protease specificity-enhancing factor
331	 47.33	0	375247..375732	-	161	145597654	-	YPDSF_0338	-	hypothetical protein
332	 51.37	0	376173..377591	-	472	145597655	gltD	YPDSF_0339	-	glutamate synthase subunit beta
333	 52.47	0	377601..382058	-	1485	145597656	gltB	YPDSF_0340	-	glutamate synthase subunit alpha
334	 50.90	0	382860..383804	+	314	145597657	-	YPDSF_0341	-	hypothetical protein
335	 48.35	0	384068..386404	+	778	145597658	-	YPDSF_0342	-	aerobic respiration control sensor protein ArcB
336	 49.86	0	387295..388020	+	241	145597659	mtgA	YPDSF_0345	-	monofunctional biosynthetic peptidoglycan transglycosylase
337	 50.69	0	388227..388802	-	191	145597660	-	YPDSF_0346	-	hypothetical protein
338	 49.58	0	388813..389403	-	196	145597661	-	YPDSF_0347	-	DnaA initiator-associating protein DiaA
339	 54.52	+1	389674..390027	-	117	145597662	-	YPDSF_0348	-	hypothetical protein
340	 50.29	0	390111..392180	-	689	145597663	-	YPDSF_0349	-	hypothetical protein
341	 49.44	0	392147..393046	+	299	145597664	-	YPDSF_0350	-	putative tetrapyrrole methylase
342	 51.49	0	393983..394687	-	234	145597665	-	YPDSF_0351	-	hypothetical protein
343	 52.80	0	394949..395842	+	297	145597666	-	YPDSF_0352	-	LysR family transcriptional regulator
344	 49.95	0	395973..396959	-	328	145597667	-	YPDSF_0353	-	hypothetical protein
345	 49.75	0	397045..397440	-	131	145597668	-	YPDSF_0354	-	hypothetical protein
346	 52.28	0	397744..398028	-	94	145597669	-	YPDSF_0355	-	hypothetical protein
347	 50.51	0	398025..398420	-	131	145597670	-	YPDSF_0356	-	hypothetical protein
348	 45.75	0	398423..398728	-	101	145597671	-	YPDSF_0357	-	hypothetical protein
349	 29.93	-2	398733..398879	-	48	145597672	-	YPDSF_0358	-	hypothetical protein
350	 46.46	0	398883..399263	-	126	145597673	-	YPDSF_0359	-	hypothetical protein
351	 47.18	0	399489..399878	-	129	145597674	-	YPDSF_0360	-	hypothetical protein
352	 50.36	0	399875..400573	-	232	145597675	-	YPDSF_0361	-	DedA family membrane protein
353	 48.11	0	400851..401432	-	193	145597676	-	YPDSF_0362	-	lipoprotein
354	 44.15	0	401633..402427	-	264	145597677	-	YPDSF_0363	-	DNA-binding transcriptional repressor ExuR
355	 50.92	0	404739..406148	+	469	145597678	-	YPDSF_0366	-	glucuronate isomerase
356	 50.00	0	406347..407798	+	483	145597679	-	YPDSF_0367	-	altronate oxidoreductase
357	 49.77	0	407809..409299	+	496	145597680	-	YPDSF_0368	-	altronate hydrolase
358	 48.40	0	409452..409982	+	176	145597681	-	YPDSF_0369	-	hypothetical protein
359	 45.97	0	410100..410558	-	152	145597682	-	YPDSF_0370	-	transposase for the IS1541 insertion element
360	 48.18	0	410759..412078	-	439	145597683	-	YPDSF_0371	-	serine/threonine transporter SstT
361	 47.59	0	412550..413545	-	331	145597684	-	YPDSF_0372	-	MocA family oxidoreductase
362	 44.51	0	413763..414272	-	169	145597685	-	YPDSF_0373	-	hypothetical protein
363	 44.82	0	414511..417504	-	997	145597686	-	YPDSF_0374	-	autotransporter protein
364	 49.49	0	417973..419160	+	395	145597687	-	YPDSF_0375	-	methyltransferase
365	 53.02	+1	419276..421297	-	673	145597688	-	YPDSF_0376	-	2,4-dienoyl-CoA reductase
366	 46.49	0	421510..422079	-	189	145597689	-	YPDSF_0377	-	acid-resistance membrane protein
367	 49.00	0	422470..423969	-	499	145597690	-	YPDSF_0378	-	kinase protein
368	 51.50	0	424001..425734	-	577	145597691	-	YPDSF_0379	-	hypothetical protein
369	 50.79	0	425734..426363	-	209	145597692	-	YPDSF_0380	-	hypothetical protein
370	 50.13	0	426393..426773	-	126	145597693	-	YPDSF_0381	-	hypothetical protein
371	 51.57	0	426875..427576	-	233	145597694	-	YPDSF_0382	-	hypothetical protein
372	 44.24	0	427515..428156	-	213	145597695	-	YPDSF_0383	-	tellurium resistance protein
373	 48.51	0	428189..428827	-	212	145597696	-	YPDSF_0384	-	tellurium resistance protein
374	 54.17	+1	429542..431230	+	562	145597697	-	YPDSF_0385	-	hemolysin activator protein
375	 57.22	+1	431275..441162	+	3295	145597698	-	YPDSF_0386	-	adhesin
376	 52.00	0	441454..441603	+	49	145597699	-	YPDSF_0387	-	hypothetical protein
377	 46.49	0	441658..441885	+	75	145597700	-	YPDSF_0388	-	hypothetical protein
378	 59.26	+2	442430..443185	+	251	145597701	-	YPDSF_0389	-	hemagglutinin/hemolysin
379	 58.18	+2	443249..443413	+	54	145597702	-	YPDSF_0390	-	hypothetical protein
380	 54.68	+1	443681..445966	-	761	145597703	-	YPDSF_0391	-	putative autotransporter protein
381	 48.39	0	446026..447021	-	331	145597704	-	YPDSF_0392	-	hypothetical protein
382	 48.04	0	447123..448502	-	459	145597705	-	YPDSF_0393	-	hypothetical protein
383	 48.55	0	448840..449943	+	367	145597706	-	YPDSF_0394	-	transporter ATP-binding protein
384	 53.07	+1	450026..453379	+	1117	145597707	-	YPDSF_0395	-	hypothetical protein
385	 47.92	0	453488..454474	+	328	145597708	-	YPDSF_0396	-	LacI-family regulatory protein
386	 52.05	0	454551..455795	+	414	145597709	-	YPDSF_0397	-	sugar binding protein
387	 46.94	0	455849..456730	+	293	145597710	-	YPDSF_0398	-	permease protein
388	 46.64	0	456730..457548	+	272	145597711	-	YPDSF_0399	-	permease
389	 55.62	+1	457545..458060	+	171	145597712	-	YPDSF_0400	-	hypothetical protein
390	 57.83	+2	458111..460294	+	727	145597713	-	YPDSF_0401	-	glycosyl hydrolase
391	 52.13	0	460358..461884	-	508	145597714	-	YPDSF_0402	-	hypothetical protein
392	 53.15	+1	461889..463790	-	633	145597715	-	YPDSF_0403	-	membrane protein
393	 54.00	+1	463774..464823	-	349	145597716	-	YPDSF_0404	-	multidrug resistance protein MdtN
394	 51.79	0	464833..465168	-	111	145597717	-	YPDSF_0405	-	hypothetical protein
395	 45.77	0	465165..465365	-	66	145597718	-	YPDSF_0406	-	hypothetical protein
396	 42.58	-1	466131..467363	+	410	145597719	-	YPDSF_0407	-	aminotransferase
397	 34.68	-2	468822..469268	+	148	145597720	-	YPDSF_0410	-	hypothetical protein
398	 35.41	-2	469402..470028	+	208	145597721	-	YPDSF_0411	-	hypothetical protein
399	 35.43	-2	470044..470424	+	126	145597722	-	YPDSF_0412	-	translational inhibitor protein
400	 51.11	0	470709..471113	+	134	145597723	-	YPDSF_0413	-	translational inhibitor protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.