IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3426	 52.72	0	4018886..4019767	+	293	145600749	-	YPDSF_3502	-	DNA-binding transcriptional regulator IlvY
3427	 38.57	-1	4019822..4020031	-	69	145600750	-	YPDSF_3503	-	hypothetical protein
3428	 36.46	-2	4020643..4020834	+	63	145600751	-	YPDSF_3504	-	hypothetical protein
3429	 39.29	-1	4020927..4021598	+	223	145600752	-	YPDSF_3505	-	hypothetical protein
3430	 34.20	-2	4021582..4022043	+	153	145600753	-	YPDSF_3506	-	membrane protein
3431	 34.20	-2	4022123..4022584	+	153	145600754	-	YPDSF_3507	-	membrane protein
3432	 33.12	-2	4022664..4023128	+	154	145600755	-	YPDSF_3508	-	membrane protein
3433	 53.66	+1	4023259..4024803	-	514	145600756	-	YPDSF_3509	-	threonine dehydratase
3434	 53.11	+1	4024809..4026659	-	616	145600757	-	YPDSF_3510	-	dihydroxy-acid dehydratase
3435	 51.56	0	4026970..4027896	-	308	145600758	-	YPDSF_3511	-	branched-chain amino acid aminotransferase
3436	 49.22	0	4027919..4028176	-	85	145600759	ilvM	YPDSF_3512	-	acetolactate synthase 2 regulatory subunit
3437	 53.25	+1	4028173..4029819	-	548	145600760	-	YPDSF_3513	-	acetolactate synthase 2 catalytic subunit
3438	 53.41	+1	4030442..4031965	+	507	145600761	-	YPDSF_3514	-	magnesium chelatase family protein
3439	 48.94	0	4032222..4032644	-	140	145600762	-	YPDSF_3515	-	hypothetical protein
3440	 47.51	0	4032679..4033560	+	293	145600763	-	YPDSF_3516	-	transcriptional regulator HdfR
3441	 45.12	0	4033547..4034539	-	330	145600764	-	YPDSF_3517	-	inner membrane ABC transporter permease protein YjfF
3442	 48.82	0	4034539..4035558	-	339	145600765	-	YPDSF_3518	-	sugar transport system permease
3443	 45.88	0	4035570..4037060	-	496	145600766	-	YPDSF_3519	-	sugar transport system ATP-binding protein
3444	 46.50	0	4037146..4038102	-	318	145600767	-	YPDSF_3520	-	periplasmic protein precursor
3445	 48.73	0	4044968..4045831	-	287	162202299	-	YPDSF_3521	-	glutamate racemase
3446	 46.52	0	4045776..4047671	-	631	145600769	btuB	YPDSF_3522	-	vitamin B12/cobalamin outer membrane transporter
3447	 47.74	0	4048133..4049236	+	367	145600770	-	YPDSF_3523	-	tRNA (uracil-5-)-methyltransferase
3448	 46.81	0	4049370..4049777	-	135	145600771	-	YPDSF_3524	-	hypothetical protein
3449	 51.57	0	4049790..4050425	-	211	145600772	-	YPDSF_3525	-	DNA-binding transcriptional repressor FabR
3450	 48.47	0	4050643..4052043	+	466	145600773	-	YPDSF_3526	-	soluble pyridine nucleotide transhydrogenase
3451	 48.80	0	4052026..4052943	-	305	145600774	-	YPDSF_3527	-	DNA-binding transcriptional regulator OxyR
3452	 46.31	0	4053090..4053821	+	243	145600775	-	YPDSF_3528	-	peroxiredoxin/glutaredoxin family protein
3453	 51.78	0	4053916..4055379	+	487	145600776	-	YPDSF_3529	-	dihydrolipoamide dehydrogenase
3454	 47.26	0	4055495..4056298	-	267	145600777	-	YPDSF_3530	-	membrane protein
3455	 48.68	0	4056363..4057691	-	442	145600778	-	YPDSF_3531	-	HlyD family secretion protein
3456	 49.06	0	4057767..4059584	-	605	145600779	-	YPDSF_3532	-	ABC transporter protein
3457	 42.23	-1	4059741..4060358	-	205	145600780	-	YPDSF_3533	-	hemophore HasA
3458	 44.36	0	4060580..4063072	-	830	145600781	-	YPDSF_3534	-	TonB dependent receptor protein
3459	 50.66	0	4063671..4065044	-	457	145600782	-	YPDSF_3535	-	argininosuccinate lyase
3460	 50.97	0	4065211..4065987	-	258	145600783	-	YPDSF_3536	-	acetylglutamate kinase
3461	 50.45	0	4066153..4067157	-	334	145600784	argC	YPDSF_3537	-	N-acetyl-gamma-glutamyl-phosphate reductase
3462	 50.43	0	4067408..4068571	+	387	145600785	-	YPDSF_3538	-	acetylornithine deacetylase
3463	 52.56	0	4068945..4071581	+	878	145600786	-	YPDSF_3539	-	phosphoenolpyruvate carboxylase
3464	 62.96	+2	4071733..4071948	-	71	145600787	-	YPDSF_3540	-	hypothetical protein
3465	 46.44	0	4072892..4073677	+	261	145600788	-	YPDSF_3541	-	transposase for insertion sequence IS1661
3466	 48.52	0	4073740..4074009	-	89	145600789	rpsO	YPDSF_3542	-	30S ribosomal protein S15
3467	 49.44	0	4074132..4075106	-	324	145600790	truB	YPDSF_3543	-	tRNA pseudouridine synthase B
3468	 44.53	0	4075106..4075516	-	136	145600791	rbfA	YPDSF_3544	-	ribosome-binding factor A
3469	 49.72	0	4075582..4078260	-	892	145600792	infB	YPDSF_3545	-	translation initiation factor IF-2
3470	 49.13	0	4078285..4079772	-	495	145600793	nusA	YPDSF_3546	-	transcription elongation factor NusA
3471	 46.80	0	4079794..4080246	-	150	145600794	-	YPDSF_3547	-	hypothetical protein
3472	 48.21	0	4080778..4081113	-	111	145600795	secG	YPDSF_3548	-	preprotein translocase subunit SecG
3473	 47.65	0	4081336..4082676	-	446	145600796	glmM	YPDSF_3549	-	phosphoglucosamine mutase
3474	 47.60	0	4082686..4083519	-	277	145600797	folP	YPDSF_3550	-	dihydropteroate synthase
3475	 46.98	0	4083639..4085573	-	644	145600798	hflB	YPDSF_3551	-	ATP-dependent metalloprotease
3476	 45.56	0	4085630..4086259	-	209	145600799	rrmJ	YPDSF_3552	-	23S rRNA methyltransferase J
3477	 43.54	0	4086406..4086699	+	97	145600800	-	YPDSF_3553	-	hypothetical protein
3478	 42.35	-1	4086827..4087303	-	158	145600801	greA	YPDSF_3554	-	transcription elongation factor GreA
3479	 48.24	0	4087561..4089009	+	482	145600802	-	YPDSF_3555	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
3480	 49.32	0	4089015..4089677	+	220	145600803	-	YPDSF_3556	-	DNA-binding transcriptional regulator BasR
3481	 46.82	0	4089674..4090741	+	355	145600804	-	YPDSF_3557	-	sensor protein BasS/PmrB
3482	 48.93	0	4090836..4092008	-	390	145600805	obgE	YPDSF_3558	-	GTPase ObgE
3483	 48.63	0	4092009..4092995	-	328	145600806	-	YPDSF_3559	-	hypothetical protein
3484	 48.84	0	4093083..4093340	-	85	145600807	rpmA	YPDSF_3560	-	50S ribosomal protein L27
3485	 45.51	0	4093360..4093671	-	103	145600808	rplU	YPDSF_3561	-	50S ribosomal protein L21
3486	 48.97	0	4093931..4094902	+	323	145600809	-	YPDSF_3562	-	octaprenyl diphosphate synthase
3487	 46.84	0	4094999..4095346	-	115	145600810	-	YPDSF_3563	-	hypothetical protein
3488	 49.64	0	4095530..4095805	+	91	145600811	-	YPDSF_3564	-	DNA-binding protein
3489	 47.71	0	4096239..4097177	-	312	145600812	-	YPDSF_3565	-	malate dehydrogenase
3490	 45.22	0	4097641..4098111	+	156	145600813	-	YPDSF_3566	-	arginine repressor
3491	 40.91	-1	4098500..4098763	+	87	145600814	-	YPDSF_3567	-	hypothetical protein
3492	 50.04	0	4099059..4100441	-	460	145600815	-	YPDSF_3568	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
3493	 46.55	0	4100612..4101625	+	337	145600816	-	YPDSF_3569	-	fructose-1,6-bisphosphatase
3494	 46.78	0	4101825..4102352	+	175	145600817	-	YPDSF_3570	-	inorganic pyrophosphatase
3495	 45.94	0	4102470..4102826	-	118	145600818	-	YPDSF_3571	-	hypothetical protein
3496	 52.35	0	4102829..4106725	-	1298	145600819	-	YPDSF_3572	-	hypothetical protein
3497	 51.35	0	4106722..4108458	-	578	145600820	-	YPDSF_3573	-	hypothetical protein
3498	 53.21	+1	4108733..4109371	+	212	145600821	-	YPDSF_3574	-	methionine sulfoxide reductase A
3499	 46.25	0	4109630..4110961	+	443	145600822	-	YPDSF_3575	-	hypothetical protein
3500	 45.54	0	4111069..4111281	-	70	145600823	-	YPDSF_3576	-	hypothetical protein
3501	 45.92	0	4111617..4112180	+	187	145600824	-	YPDSF_3577	-	hypothetical protein
3502	 53.71	+1	4112183..4112923	-	246	145600825	-	YPDSF_3578	-	PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
3503	 48.39	0	4113370..4115328	+	652	145600826	cpdB	YPDSF_3579	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
3504	 48.80	0	4115483..4116148	+	221	145600827	-	YPDSF_3580	-	cell morphogenesis/cell wall metabolism regulator
3505	 52.01	0	4116246..4116866	-	206	145600828	-	YPDSF_3581	-	peptidyl-prolyl cis-trans isomerase
3506	 51.28	0	4117224..4117964	+	246	145600829	-	YPDSF_3582	-	hypothetical protein
3507	 45.18	0	4118104..4118559	+	151	145600830	-	YPDSF_3583	-	hypothetical protein
3508	 45.97	0	4118681..4119139	-	152	145600831	-	YPDSF_3584	-	transposase for the IS1541 insertion element
3509	 49.45	0	4119335..4119787	-	150	145600832	rplI	YPDSF_3585	-	50S ribosomal protein L9
3510	 47.37	0	4119827..4120054	-	75	145600833	rpsR	YPDSF_3586	-	30S ribosomal protein S18
3511	 51.15	0	4120385..4120777	-	130	145600834	rpsF	YPDSF_3587	-	30S ribosomal protein S6
3512	 50.27	0	4121144..4121887	-	247	145600835	-	YPDSF_3588	-	esterase
3513	 50.38	0	4121926..4122705	-	259	145600836	-	YPDSF_3589	-	transposase/IS protein
3514	 52.79	0	4122705..4123727	-	340	145600837	-	YPDSF_3590	-	transposase
3515	 50.64	0	4124044..4124355	+	103	145600838	-	YPDSF_3591	-	lipoprotein
3516	 53.10	+1	4124427..4126070	-	547	145600839	-	YPDSF_3592	-	isovaleryl CoA dehydrogenase
3517	 53.85	+1	4126478..4127218	-	246	145600840	-	YPDSF_3593	-	23S rRNA (guanosine-2'-O-)-methyltransferase
3518	 52.34	0	4127347..4129872	-	841	145600841	-	YPDSF_3594	-	exoribonuclease R
3519	 44.73	0	4130113..4130577	-	154	145600842	-	YPDSF_3595	-	transcriptional repressor NsrR
3520	 50.96	0	4130887..4132185	-	432	145600843	-	YPDSF_3596	-	adenylosuccinate synthetase
3521	 48.76	0	4132285..4132485	-	66	145600844	-	YPDSF_3597	-	membrane protein
3522	 50.25	0	4132657..4133661	-	334	145600845	-	YPDSF_3598	-	FtsH protease regulator HflC
3523	 50.32	0	4133665..4134924	-	419	145600846	-	YPDSF_3599	-	FtsH protease regulator HflK
3524	 49.26	0	4135165..4136451	-	428	145600847	-	YPDSF_3600	-	putative GTPase HflX
3525	 46.08	0	4136550..4136855	-	101	145600848	hfq	YPDSF_3601	-	RNA-binding protein Hfq
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.