IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3360	 41.03	-1	3938442..3938714	+	90	145600683	-	YPDSF_3433	-	hypothetical protein
3361	 49.05	0	3938901..3939320	-	139	145600684	-	YPDSF_3434	-	hypothetical protein
3362	 37.69	-2	3939532..3939852	-	106	145600685	-	YPDSF_3435	-	hypothetical protein
3363	 50.88	0	3940142..3940768	+	208	145600686	-	YPDSF_3436	-	hypothetical protein
3364	 52.72	0	3941182..3943548	+	788	145600687	zntA	YPDSF_3437	-	zinc/cadmium/mercury/lead-transporting ATPase
3365	 46.72	0	3943648..3944043	-	131	145600688	-	YPDSF_3438	-	cell developmental protein SirA
3366	 48.58	0	3944186..3944854	+	222	145600689	-	YPDSF_3439	-	hypothetical protein
3367	 47.73	0	3944984..3945511	+	175	145600690	-	YPDSF_3440	-	hypothetical protein
3368	 48.92	0	3945673..3946968	-	431	145600691	glpC	YPDSF_3441	-	sn-glycerol-3-phosphate dehydrogenase subunit C
3369	 52.39	0	3946965..3948239	-	424	145600692	-	YPDSF_3442	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
3370	 53.99	+1	3948229..3949884	-	551	145600693	glpA	YPDSF_3443	-	sn-glycerol-3-phosphate dehydrogenase subunit A
3371	 45.34	0	3950509..3951624	+	371	145600694	glpQ	YPDSF_3444	-	glycerophosphodiester phosphodiesterase
3372	 39.17	-1	3951698..3952897	-	399	145600695	-	YPDSF_3445	-	hypothetical protein
3373	 48.88	0	3953174..3954151	-	325	145600696	-	YPDSF_3446	-	putative sugar phosphatase
3374	 51.81	0	3954018..3955013	-	331	145600697	-	YPDSF_3447	-	lysophospholipase L2
3375	 48.15	0	3955227..3955847	+	206	145600698	rhtB	YPDSF_3448	-	homoserine/homoserine lactone efflux protein
3376	 51.53	0	3955898..3956518	-	206	145600699	-	YPDSF_3449	-	threonine efflux system
3377	 52.59	0	3956625..3958457	-	610	145600700	-	YPDSF_3450	-	ATP-dependent DNA helicase RecQ
3378	 45.96	0	3958535..3959413	-	292	145600701	-	YPDSF_3451	-	phospholipase A
3379	 48.41	0	3959635..3960105	+	156	145600702	-	YPDSF_3452	-	hypothetical protein
3380	 51.85	0	3960192..3961082	+	296	145600703	-	YPDSF_3453	-	hypothetical protein
3381	 50.47	0	3961180..3962130	-	316	145600704	-	YPDSF_3454	-	magnesium/nickel/cobalt transporter CorA
3382	 50.77	0	3962779..3963621	-	280	145600705	-	YPDSF_3455	-	hypothetical protein
3383	 51.81	0	3963635..3964852	-	405	145600706	-	YPDSF_3456	-	hypothetical protein
3384	 49.20	0	3965280..3965966	+	228	145600707	-	YPDSF_3457	-	TetR family transcriptional regulator
3385	 54.60	+1	3966080..3968242	-	720	145600708	uvrD	YPDSF_3458	-	DNA-dependent helicase II
3386	 50.91	0	3968344..3969060	-	238	145600709	-	YPDSF_3459	-	flavin mononucleotide phosphatase
3387	 53.62	+1	3969060..3969971	-	303	145600710	xerC	YPDSF_3460	-	site-specific tyrosine recombinase XerC
3388	 53.05	+1	3969968..3970672	-	234	145600711	-	YPDSF_3461	-	hypothetical protein
3389	 53.09	+1	3970737..3971561	-	274	145600712	dapF	YPDSF_3462	-	diaminopimelate epimerase
3390	 52.91	+1	3971745..3971933	-	62	145600713	-	YPDSF_3463	-	lipoprotein
3391	 48.29	0	3972085..3972405	+	106	145600714	cyaY	YPDSF_3464	-	frataxin-like protein
3392	 49.28	0	3972649..3975201	-	850	145600715	cyaA	YPDSF_3465	-	adenylate cyclase
3393	 39.05	-1	3975265..3975474	+	69	145600716	-	YPDSF_3466	-	hypothetical protein
3394	 54.78	+1	3975695..3976636	+	313	145600717	hemC	YPDSF_3467	-	porphobilinogen deaminase
3395	 51.20	0	3976633..3977382	+	249	145600718	hemD	YPDSF_3468	-	uroporphyrinogen-III synthase
3396	 50.67	0	3977413..3978537	+	374	145600719	-	YPDSF_3469	-	putative uroporphyrinogen III C-methyltransferase
3397	 52.58	0	3978540..3979760	+	406	145600720	-	YPDSF_3470	-	putative protoheme IX biogenesis protein
3398	 45.75	0	3979953..3980411	-	152	145600721	-	YPDSF_3471	-	transposase for the IS1541 insertion element
3399	 49.71	0	3981917..3983308	-	463	145600722	-	YPDSF_3472	-	putative transport protein YifK
3400	 51.55	0	3983832..3984572	-	246	145600723	-	YPDSF_3473	-	putative UDP-N-acetyl-D-mannosaminuronic acid transferase
3401	 48.21	0	3984581..3985945	-	454	145600724	-	YPDSF_3474	-	putative entero common antigen polymerase
3402	 50.37	0	3985942..3987027	-	361	145600725	-	YPDSF_3475	-	4-alpha-L-fucosyltransferase
3403	 50.12	0	3987050..3988306	-	418	145600726	-	YPDSF_3476	-	lipopolysaccharide biosynthesis protein
3404	 48.81	0	3988308..3989438	-	376	145600727	-	YPDSF_3477	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3405	 50.59	0	3989440..3990204	-	254	145600728	-	YPDSF_3478	-	TDP-fucosamine acetyltransferase
3406	 49.32	0	3990155..3991036	-	293	145600729	-	YPDSF_3479	-	glucose-1-phosphate thymidylyltransferase
3407	 51.30	0	3991314..3992387	-	357	145600730	-	YPDSF_3480	-	dTDP-D-glucose-4,6-dehydratase
3408	 49.80	0	3992378..3993640	-	420	145600731	wecC	YPDSF_3481	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3409	 50.30	0	3993637..3994821	-	394	145600732	-	YPDSF_3482	-	UDP-N-acetylglucosamine 2-epimerase
3410	 48.38	0	3995099..3996175	-	358	145600733	-	YPDSF_3483	-	lipopolysaccharide biosynthesis protein WzzE
3411	 46.91	0	3996196..3997278	-	360	145600734	-	YPDSF_3484	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
3412	 45.87	0	3997828..3999087	-	419	145600735	rho	YPDSF_3485	-	transcription termination factor Rho
3413	 45.87	0	3999567..3999893	-	108	145600736	-	YPDSF_3486	-	thioredoxin 1
3414	 48.64	0	4000012..4001298	+	428	145600737	-	YPDSF_3487	-	ATP-dependent RNA helicase RhlB
3415	 50.63	0	4001302..4002798	+	498	145600738	-	YPDSF_3488	-	guanosine pentaphosphate phosphohydrolase
3416	 48.71	0	4002966..4004987	-	673	145600739	-	YPDSF_3489	-	ATP-dependent DNA helicase Rep
3417	 45.04	0	4005191..4005472	+	93	145600740	-	YPDSF_3490	-	peptidyl-prolyl cis-trans isomerase C
3418	 34.09	-2	4005711..4006502	+	263	145600741	-	YPDSF_3491	-	hypothetical protein
3419	 43.69	0	4007294..4007824	+	176	145600742	-	YPDSF_3492	-	fimbrial protein
3420	 42.21	-1	4007888..4008619	+	243	145600743	-	YPDSF_3493	-	fimbrial chaperone
3421	 47.11	0	4008647..4011274	+	875	145600744	-	YPDSF_3494	-	outer membrane usher protein
3422	 49.13	0	4011279..4012658	+	459	145600745	-	YPDSF_3495	-	hypothetical protein
3423	 48.23	0	4012624..4013442	+	272	145600746	-	YPDSF_3496	-	chaperone protein
3424	 42.79	-1	4016741..4016941	-	66	145600747	-	YPDSF_3500	-	hypothetical protein
3425	 50.30	0	4017122..4018600	-	492	145600748	-	YPDSF_3501	-	ketol-acid reductoisomerase
3426	 52.72	0	4018886..4019767	+	293	145600749	-	YPDSF_3502	-	DNA-binding transcriptional regulator IlvY
3427	 38.57	-1	4019822..4020031	-	69	145600750	-	YPDSF_3503	-	hypothetical protein
3428	 36.46	-2	4020643..4020834	+	63	145600751	-	YPDSF_3504	-	hypothetical protein
3429	 39.29	-1	4020927..4021598	+	223	145600752	-	YPDSF_3505	-	hypothetical protein
3430	 34.20	-2	4021582..4022043	+	153	145600753	-	YPDSF_3506	-	membrane protein
3431	 34.20	-2	4022123..4022584	+	153	145600754	-	YPDSF_3507	-	membrane protein
3432	 33.12	-2	4022664..4023128	+	154	145600755	-	YPDSF_3508	-	membrane protein
3433	 53.66	+1	4023259..4024803	-	514	145600756	-	YPDSF_3509	-	threonine dehydratase
3434	 53.11	+1	4024809..4026659	-	616	145600757	-	YPDSF_3510	-	dihydroxy-acid dehydratase
3435	 51.56	0	4026970..4027896	-	308	145600758	-	YPDSF_3511	-	branched-chain amino acid aminotransferase
3436	 49.22	0	4027919..4028176	-	85	145600759	ilvM	YPDSF_3512	-	acetolactate synthase 2 regulatory subunit
3437	 53.25	+1	4028173..4029819	-	548	145600760	-	YPDSF_3513	-	acetolactate synthase 2 catalytic subunit
3438	 53.41	+1	4030442..4031965	+	507	145600761	-	YPDSF_3514	-	magnesium chelatase family protein
3439	 48.94	0	4032222..4032644	-	140	145600762	-	YPDSF_3515	-	hypothetical protein
3440	 47.51	0	4032679..4033560	+	293	145600763	-	YPDSF_3516	-	transcriptional regulator HdfR
3441	 45.12	0	4033547..4034539	-	330	145600764	-	YPDSF_3517	-	inner membrane ABC transporter permease protein YjfF
3442	 48.82	0	4034539..4035558	-	339	145600765	-	YPDSF_3518	-	sugar transport system permease
3443	 45.88	0	4035570..4037060	-	496	145600766	-	YPDSF_3519	-	sugar transport system ATP-binding protein
3444	 46.50	0	4037146..4038102	-	318	145600767	-	YPDSF_3520	-	periplasmic protein precursor
3445	 48.73	0	4044968..4045831	-	287	162202299	-	YPDSF_3521	-	glutamate racemase
3446	 46.52	0	4045776..4047671	-	631	145600769	btuB	YPDSF_3522	-	vitamin B12/cobalamin outer membrane transporter
3447	 47.74	0	4048133..4049236	+	367	145600770	-	YPDSF_3523	-	tRNA (uracil-5-)-methyltransferase
3448	 46.81	0	4049370..4049777	-	135	145600771	-	YPDSF_3524	-	hypothetical protein
3449	 51.57	0	4049790..4050425	-	211	145600772	-	YPDSF_3525	-	DNA-binding transcriptional repressor FabR
3450	 48.47	0	4050643..4052043	+	466	145600773	-	YPDSF_3526	-	soluble pyridine nucleotide transhydrogenase
3451	 48.80	0	4052026..4052943	-	305	145600774	-	YPDSF_3527	-	DNA-binding transcriptional regulator OxyR
3452	 46.31	0	4053090..4053821	+	243	145600775	-	YPDSF_3528	-	peroxiredoxin/glutaredoxin family protein
3453	 51.78	0	4053916..4055379	+	487	145600776	-	YPDSF_3529	-	dihydrolipoamide dehydrogenase
3454	 47.26	0	4055495..4056298	-	267	145600777	-	YPDSF_3530	-	membrane protein
3455	 48.68	0	4056363..4057691	-	442	145600778	-	YPDSF_3531	-	HlyD family secretion protein
3456	 49.06	0	4057767..4059584	-	605	145600779	-	YPDSF_3532	-	ABC transporter protein
3457	 42.23	-1	4059741..4060358	-	205	145600780	-	YPDSF_3533	-	hemophore HasA
3458	 44.36	0	4060580..4063072	-	830	145600781	-	YPDSF_3534	-	TonB dependent receptor protein
3459	 50.66	0	4063671..4065044	-	457	145600782	-	YPDSF_3535	-	argininosuccinate lyase
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.