IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3285	 52.28	0	3842788..3843732	+	314	145600608	-	YPDSF_3356	-	2-dehydro-3-deoxygluconokinase
3286	 51.00	0	3843896..3845395	-	499	145600609	-	YPDSF_3357	-	insulinase family protease
3287	 46.74	0	3845760..3847049	-	429	145600610	-	YPDSF_3358	-	C4-dicarboxylate transporter DctA
3288	 46.88	0	3847504..3847983	-	159	145600611	-	YPDSF_3359	-	hypothetical protein
3289	 39.29	-1	3850071..3850775	-	234	145600612	-	YPDSF_3362	-	hypothetical protein
3290	 47.78	0	3851415..3853601	-	728	145600613	-	YPDSF_3363	-	biofilm formation regulator HmsP
3291	 50.11	0	3853744..3854643	-	299	145600614	-	YPDSF_3364	-	endo-1,4-D-glucanase
3292	 49.21	0	3854962..3856038	-	358	145600615	dppF	YPDSF_3365	-	dipeptide transporter ATP-binding subunit
3293	 52.30	0	3856035..3857057	-	340	145600616	dppD	YPDSF_3366	-	dipeptide transporter ATP-binding subunit
3294	 53.51	+1	3857124..3857921	-	265	145600617	-	YPDSF_3367	-	dipeptide transport system permease protein
3295	 52.55	0	3857932..3858951	-	339	145600618	-	YPDSF_3368	-	dipeptide transporter permease DppB
3296	 48.69	0	3859234..3860841	-	535	145600619	-	YPDSF_3369	-	periplasmic dipeptide transport protein
3297	 46.67	0	3861510..3863189	-	559	145600620	-	YPDSF_3370	-	hemolysin activator protein
3298	 38.29	-2	3863383..3864774	-	463	145600621	-	YPDSF_3371	-	hypothetical protein
3299	 47.37	0	3865280..3866611	-	443	145600622	-	YPDSF_3372	-	regulatory protein UhpC
3300	 49.02	0	3866706..3868235	-	509	145600623	-	YPDSF_3373	-	sensory histidine kinase UhpB
3301	 50.76	0	3868232..3868822	-	196	145600624	-	YPDSF_3374	-	two-component system response regulator
3302	 44.56	0	3868938..3870629	-	563	145600625	-	YPDSF_3375	-	phosphoethanolamine transferase
3303	 50.38	0	3870700..3871479	-	259	145600626	-	YPDSF_3376	-	transposase/IS protein
3304	 52.79	0	3871479..3872501	-	340	145600627	-	YPDSF_3377	-	transposase
3305	 43.84	0	3872591..3873142	+	183	145600628	-	YPDSF_3378	-	acetyltransferase
3306	 39.85	-1	3873353..3874303	+	316	145600629	-	YPDSF_3379	-	pantothenate kinase
3307	 40.62	-1	3874338..3875297	-	319	145600630	-	YPDSF_3380	-	biotin--protein ligase
3308	 43.55	0	3875294..3876331	-	345	145600631	murB	YPDSF_3381	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3309	 42.88	-1	3882468..3883001	-	177	145600632	hemG	YPDSF_3382	-	protoporphyrinogen oxidase
3310	 46.56	0	3883023..3884474	-	483	145600633	-	YPDSF_3383	-	potassium transporter
3311	 46.08	0	3884514..3885125	-	203	145600634	-	YPDSF_3384	-	hypothetical protein
3312	 45.35	0	3885125..3886456	-	443	145600635	-	YPDSF_3385	-	proline dipeptidase
3313	 47.67	0	3886783..3888972	+	729	145600636	fadB	YPDSF_3386	-	multifunctional fatty acid oxidation complex subunit alpha
3314	 49.40	0	3888984..3890147	+	387	145600637	fadA	YPDSF_3387	-	3-ketoacyl-CoA thiolase
3315	 48.72	0	3890307..3891008	-	233	145600638	fre	YPDSF_3388	-	FMN reductase
3316	 48.72	0	3891063..3892583	-	506	145600639	-	YPDSF_3389	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3317	 44.17	0	3892807..3893295	+	162	145600640	rfaH	YPDSF_3390	-	transcriptional activator RfaH
3318	 47.70	0	3893405..3894427	-	340	145600641	-	YPDSF_3391	-	delta-aminolevulinic acid dehydratase
3319	 48.66	0	3894442..3895224	-	260	145600642	-	YPDSF_3392	-	DNase TatD
3320	 44.92	0	3895280..3896056	-	258	145600643	-	YPDSF_3393	-	TatABCE protein translocation system subunit
3321	 50.53	0	3896059..3896721	-	220	145600644	-	YPDSF_3394	-	Sec-independent protein translocase protein TatB
3322	 43.82	0	3896725..3896991	-	88	145600645	-	YPDSF_3395	-	Sec-independent protein translocase protein TatA
3323	 46.02	0	3897171..3898802	-	543	145600646	ubiB	YPDSF_3396	-	putative ubiquinone biosynthesis protein UbiB
3324	 45.31	0	3898802..3899452	-	216	145600647	-	YPDSF_3397	-	hypothetical protein
3325	 44.84	0	3899466..3900221	-	251	145600648	ubiE	YPDSF_3398	-	ubiquinone/menaquinone biosynthesis methyltransferase
3326	 46.81	0	3900313..3901818	-	501	145600649	-	YPDSF_3399	-	DNA recombination protein
3327	 49.53	0	3902026..3902556	-	176	145600650	-	YPDSF_3400	-	hypothetical protein
3328	 48.68	0	3902828..3904639	-	603	145600651	-	YPDSF_3401	-	carbon starvation protein
3329	 46.81	0	3905003..3905833	-	276	145600652	-	YPDSF_3402	-	hypothetical protein
3330	 50.79	0	3905954..3906715	-	253	145600653	-	YPDSF_3403	-	uridine phosphorylase
3331	 49.83	0	3907143..3908015	+	290	145600654	-	YPDSF_3404	-	carboxymethylenebutenolidase
3332	 49.89	0	3908070..3910346	-	758	145600655	-	YPDSF_3405	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3333	 53.04	+1	3910452..3911405	+	317	145600656	-	YPDSF_3406	-	LysR family transcriptional regulator
3334	 50.27	0	3911293..3912225	-	310	145600657	-	YPDSF_3407	-	membrane protein
3335	 53.08	+1	3912545..3913501	-	318	145600658	-	YPDSF_3408	-	membrane protein
3336	 54.53	+1	3913602..3914351	-	249	145600659	ugpQ	YPDSF_3409	-	cytoplasmic glycerophosphodiester phosphodiesterase
3337	 52.42	0	3914348..3915421	-	357	145600660	ugpC	YPDSF_3410	-	glycerol-3-phosphate transporter ATP-binding subunit
3338	 48.94	0	3915428..3916273	-	281	145600661	-	YPDSF_3411	-	glycerol-3-phosphate transporter membrane protein
3339	 50.23	0	3916270..3917157	-	295	145600662	-	YPDSF_3412	-	glycerol-3-phosphate transporter permease
3340	 46.89	0	3917455..3918774	-	439	145600663	-	YPDSF_3413	-	glycerol-3-phosphate transporter periplasmic binding protein
3341	 40.07	-1	3919212..3919820	+	202	145600664	-	YPDSF_3414	-	hypothetical protein
3342	 47.94	0	3920087..3922420	+	777	145600665	-	YPDSF_3415	-	hypothetical protein
3343	 51.38	0	3922438..3923124	+	228	145600666	-	YPDSF_3416	-	hypothetical protein
3344	 50.15	0	3923096..3923743	+	215	145600667	-	YPDSF_3417	-	hypothetical protein
3345	 49.71	0	3923805..3924323	+	172	145600668	-	YPDSF_3418	-	hypothetical protein
3346	 43.72	0	3924387..3925493	+	368	145600669	-	YPDSF_3419	-	hypothetical protein
3347	 35.93	-2	3925608..3926069	-	153	145600670	-	YPDSF_3420	-	hypothetical protein
3348	 49.04	0	3926297..3927028	-	243	145600671	livF	YPDSF_3421	-	leucine/isoleucine/valine transporter ATP-binding subunit
3349	 53.52	+1	3927043..3927810	-	255	145600672	livG	YPDSF_3422	-	leucine/isoleucine/valine transporter ATP-binding subunit
3350	 52.53	0	3927807..3929093	-	428	145600673	livM	YPDSF_3423	-	leucine/isoleucine/valine transporter permease subunit
3351	 50.16	0	3929090..3930016	-	308	145600674	-	YPDSF_3424	-	branched-chain amino acid transporter permease subunit LivH
3352	 50.09	0	3930197..3931312	-	371	145600675	-	YPDSF_3425	-	branched-chain amino acid-binding protein
3353	 48.40	0	3931689..3932126	+	145	145600676	-	YPDSF_3426	-	acetyltransferase
3354	 45.75	0	3932372..3932830	-	152	145600677	-	YPDSF_3427	-	transposase for the IS1541 insertion element
3355	 50.35	0	3933044..3933901	-	285	145600678	-	YPDSF_3428	-	RNA polymerase factor sigma-32
3356	 51.05	0	3934212..3935165	-	317	145600679	ftsX	YPDSF_3429	-	cell division protein FtsX
3357	 53.51	+1	3935155..3935823	-	222	145600680	-	YPDSF_3430	-	cell division protein FtsE
3358	 47.86	0	3935829..3937508	-	559	145600681	-	YPDSF_3431	-	cell division protein
3359	 50.53	0	3937790..3938452	+	220	145600682	-	YPDSF_3432	-	16S rRNA m(2)G966-methyltransferase
3360	 41.03	-1	3938442..3938714	+	90	145600683	-	YPDSF_3433	-	hypothetical protein
3361	 49.05	0	3938901..3939320	-	139	145600684	-	YPDSF_3434	-	hypothetical protein
3362	 37.69	-2	3939532..3939852	-	106	145600685	-	YPDSF_3435	-	hypothetical protein
3363	 50.88	0	3940142..3940768	+	208	145600686	-	YPDSF_3436	-	hypothetical protein
3364	 52.72	0	3941182..3943548	+	788	145600687	zntA	YPDSF_3437	-	zinc/cadmium/mercury/lead-transporting ATPase
3365	 46.72	0	3943648..3944043	-	131	145600688	-	YPDSF_3438	-	cell developmental protein SirA
3366	 48.58	0	3944186..3944854	+	222	145600689	-	YPDSF_3439	-	hypothetical protein
3367	 47.73	0	3944984..3945511	+	175	145600690	-	YPDSF_3440	-	hypothetical protein
3368	 48.92	0	3945673..3946968	-	431	145600691	glpC	YPDSF_3441	-	sn-glycerol-3-phosphate dehydrogenase subunit C
3369	 52.39	0	3946965..3948239	-	424	145600692	-	YPDSF_3442	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
3370	 53.99	+1	3948229..3949884	-	551	145600693	glpA	YPDSF_3443	-	sn-glycerol-3-phosphate dehydrogenase subunit A
3371	 45.34	0	3950509..3951624	+	371	145600694	glpQ	YPDSF_3444	-	glycerophosphodiester phosphodiesterase
3372	 39.17	-1	3951698..3952897	-	399	145600695	-	YPDSF_3445	-	hypothetical protein
3373	 48.88	0	3953174..3954151	-	325	145600696	-	YPDSF_3446	-	putative sugar phosphatase
3374	 51.81	0	3954018..3955013	-	331	145600697	-	YPDSF_3447	-	lysophospholipase L2
3375	 48.15	0	3955227..3955847	+	206	145600698	rhtB	YPDSF_3448	-	homoserine/homoserine lactone efflux protein
3376	 51.53	0	3955898..3956518	-	206	145600699	-	YPDSF_3449	-	threonine efflux system
3377	 52.59	0	3956625..3958457	-	610	145600700	-	YPDSF_3450	-	ATP-dependent DNA helicase RecQ
3378	 45.96	0	3958535..3959413	-	292	145600701	-	YPDSF_3451	-	phospholipase A
3379	 48.41	0	3959635..3960105	+	156	145600702	-	YPDSF_3452	-	hypothetical protein
3380	 51.85	0	3960192..3961082	+	296	145600703	-	YPDSF_3453	-	hypothetical protein
3381	 50.47	0	3961180..3962130	-	316	145600704	-	YPDSF_3454	-	magnesium/nickel/cobalt transporter CorA
3382	 50.77	0	3962779..3963621	-	280	145600705	-	YPDSF_3455	-	hypothetical protein
3383	 51.81	0	3963635..3964852	-	405	145600706	-	YPDSF_3456	-	hypothetical protein
3384	 49.20	0	3965280..3965966	+	228	145600707	-	YPDSF_3457	-	TetR family transcriptional regulator
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.