IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2854	 48.75	0	3314765..3315886	-	373	145600177	tyrA	YPDSF_2918	-	bifunctional chorismate mutase/prephenate dehydrogenase
2855	 49.54	0	3315899..3316114	-	71	145600178	-	YPDSF_2919	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase), tyrosine repressible
2856	 50.38	0	3316153..3316932	-	259	145600179	-	YPDSF_2920	-	transposase/IS protein
2857	 52.79	0	3316932..3317954	-	340	145600180	-	YPDSF_2921	-	transposase
2858	 45.75	0	3318064..3318522	+	152	145600181	-	YPDSF_2922	-	transposase for the IS1541 insertion element
2859	 46.38	0	3318712..3318918	-	68	145600182	-	YPDSF_2923	-	zinc-binding protein
2860	 45.29	0	3319104..3319856	-	250	145600183	-	YPDSF_2924	-	hypothetical protein
2861	 47.02	0	3319853..3320473	-	206	145600184	coaE	YPDSF_2925	-	dephospho-CoA kinase
2862	 47.22	0	3320769..3321812	+	347	145600185	-	YPDSF_2926	-	guanosine 5'-monophosphate oxidoreductase
2863	 45.21	0	3322207..3323343	-	378	145600186	-	YPDSF_2927	-	type IV pilin biogenesis protein
2864	 46.05	0	3323403..3324959	-	518	145600187	-	YPDSF_2928	-	hypothetical protein
2865	 44.73	0	3324934..3325398	-	154	145600188	-	YPDSF_2929	-	putative major pilin subunit
2866	 48.31	0	3325601..3326548	-	315	145600189	-	YPDSF_2930	-	quinolinate phosphoribosyltransferase
2867	 48.73	0	3326622..3327173	+	183	145600190	-	YPDSF_2931	-	N-acetyl-anhydromuranmyl-L-alanine amidase
2868	 48.19	0	3327463..3328317	+	284	145600191	-	YPDSF_2932	-	regulatory protein AmpE
2869	 48.43	0	3328750..3330147	-	465	145600192	-	YPDSF_2933	-	aromatic amino acid transport protein
2870	 51.11	0	3331010..3331774	+	254	145600193	pdhR	YPDSF_2934	-	transcriptional regulator PdhR
2871	 49.59	0	3331970..3334633	+	887	145600194	aceE	YPDSF_2935	-	pyruvate dehydrogenase subunit E1
2872	 51.63	0	3334647..3336176	+	509	145600195	-	YPDSF_2936	-	dihydrolipoamide acetyltransferase
2873	 42.59	-1	3336194..3336355	+	53	145600196	-	YPDSF_2937	-	hypothetical protein
2874	 48.84	0	3336482..3337906	+	474	145600197	-	YPDSF_2938	-	dihydrolipoamide dehydrogenase
2875	 45.97	0	3338149..3338607	+	152	145600198	-	YPDSF_2939	-	transposase for the IS1541 insertion element
2876	 51.90	0	3339255..3341774	+	839	145600199	-	YPDSF_2940	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
2877	 46.11	0	3342073..3342432	+	119	145600200	-	YPDSF_2941	-	hypothetical protein
2878	 54.02	+1	3342543..3343451	-	302	145600201	-	YPDSF_2942	-	hypothetical protein
2879	 45.91	0	3343889..3344683	-	264	145600202	-	YPDSF_2943	-	S-adenosylmethionine decarboxylase
2880	 48.48	0	3344761..3345651	-	296	145600203	-	YPDSF_2944	-	spermidine synthase
2881	 42.82	-1	3345768..3346115	-	115	145600204	-	YPDSF_2945	-	hypothetical protein
2882	 53.25	+1	3346432..3348033	+	533	145600205	-	YPDSF_2946	-	multicopper oxidase
2883	 47.62	0	3348244..3348789	+	181	145600206	-	YPDSF_2947	-	hypoxanthine phosphoribosyltransferase
2884	 44.63	0	3348943..3349818	-	291	145600207	-	YPDSF_2948	-	carbonic anhydrase
2885	 47.68	0	3349841..3350767	+	308	145600208	-	YPDSF_2949	-	ABC transporter, ATP-binding protein
2886	 48.12	0	3350764..3351534	+	256	145600209	-	YPDSF_2950	-	ABC transporter, integral membrane protein
2887	 40.12	-1	3351741..3352079	+	112	145600210	-	YPDSF_2951	-	hypothetical protein
2888	 43.24	-1	3351976..3353055	+	359	145600211	-	YPDSF_2952	-	hypothetical protein
2889	 47.77	0	3353204..3353584	-	126	145600212	-	YPDSF_2953	-	aspartate alpha-decarboxylase
2890	 53.10	+1	3353995..3354849	-	284	145600213	panC	YPDSF_2954	-	pantoate--beta-alanine ligase
2891	 52.13	0	3354937..3355734	-	265	145600214	panB	YPDSF_2955	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2892	 52.92	+1	3356003..3356482	-	159	145600215	-	YPDSF_2956	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
2893	 52.37	0	3356490..3357965	-	491	145600216	pcnB	YPDSF_2957	-	poly(A) polymerase I
2894	 50.13	0	3358054..3359208	-	384	145600217	-	YPDSF_2958	-	glutamyl-Q tRNA(Asp) synthetase
2895	 49.78	0	3359316..3359771	-	151	145600218	-	YPDSF_2959	-	DnaK transcriptional regulator DksA
2896	 46.23	0	3359941..3360801	-	286	145600219	-	YPDSF_2960	-	sugar fermentation stimulation protein A
2897	 56.60	+1	3360791..3361366	-	191	145600220	-	YPDSF_2961	-	2'-5' RNA ligase
2898	 56.79	+1	3361458..3363947	+	829	145600221	-	YPDSF_2962	-	ATP-dependent RNA helicase HrpB
2899	 53.37	+1	3364056..3366530	+	824	145600222	mrcB	YPDSF_2963	-	penicillin-binding protein 1b
2900	 50.41	0	3367647..3368735	+	362	145600223	-	YPDSF_2966	-	iron-hydroxamate transporter substrate-binding subunit
2901	 54.90	+1	3368732..3370729	+	665	145600224	-	YPDSF_2967	-	iron-hydroxamate transporter permease subunit
2902	 50.90	0	3371103..3372383	-	426	145600225	-	YPDSF_2968	-	glutamate-1-semialdehyde aminotransferase
2903	 50.31	0	3372764..3374200	+	478	145600226	-	YPDSF_2969	-	chloride channel protein
2904	 44.06	0	3374336..3374680	+	114	145600227	-	YPDSF_2970	-	iron-sulfur cluster insertion protein ErpA
2905	 45.10	0	3374735..3374836	-	33	145600228	-	YPDSF_2971	-	hypothetical protein
2906	 50.57	0	3374982..3375596	-	204	145600229	-	YPDSF_2972	-	hypothetical protein
2907	 53.62	+1	3375596..3376438	-	280	145600230	-	YPDSF_2973	-	vitamin B12-transporter protein BtuF
2908	 51.00	0	3376438..3377139	-	233	145600231	-	YPDSF_2974	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
2909	 43.13	-1	3377433..3378953	+	506	145600232	dgt	YPDSF_2975	-	deoxyguanosinetriphosphate triphosphohydrolase
2910	 49.86	0	3379151..3380596	+	481	145600233	-	YPDSF_2976	-	serine endoprotease
2911	 47.40	0	3380755..3383547	-	930	145600234	-	YPDSF_2977	-	hybrid sensory histidine kinase BarA
2912	 49.18	0	3383658..3383840	+	60	145600235	-	YPDSF_2978	-	hypothetical protein
2913	 50.79	0	3383856..3383981	+	41	145600236	-	YPDSF_2979	-	hypothetical protein
2914	 50.92	0	3383991..3386225	+	744	145600237	relA	YPDSF_2980	-	GDP/GTP pyrophosphokinase
2915	 50.42	0	3386427..3387269	+	280	145600238	mazG	YPDSF_2981	-	nucleoside triphosphate pyrophosphohydrolase
2916	 48.66	0	3387481..3389118	+	545	145600239	-	YPDSF_2982	-	CTP synthetase
2917	 48.77	0	3389193..3390488	+	431	145600240	eno	YPDSF_2983	-	phosphopyruvate hydratase
2918	 50.50	0	3390860..3391465	+	201	145600241	-	YPDSF_2984	-	superoxide dismutase (Cu-Zn) precursor
2919	 49.11	0	3391569..3392240	+	223	145600242	-	YPDSF_2985	-	hypothetical protein
2920	 47.50	0	3392474..3392833	-	119	145600243	-	YPDSF_2986	-	6-pyruvoyl tetrahydrobiopterin synthase family protein
2921	 52.20	0	3393226..3395064	+	612	145600244	cysJ	YPDSF_2987	-	sulfite reductase subunit alpha
2922	 50.55	0	3395064..3396794	+	576	145600245	-	YPDSF_2988	-	sulfite reductase subunit beta
2923	 50.64	0	3396791..3397258	+	155	145600246	-	YPDSF_2989	-	hypothetical protein
2924	 49.47	0	3397233..3397517	+	94	145600247	-	YPDSF_2990	-	phosphoadenylyl-sulfate reductase (thioredoxin)
2925	 45.07	0	3397576..3398052	-	158	145600248	-	YPDSF_2991	-	hypothetical protein
2926	 43.28	0	3398158..3398358	-	66	145600249	-	YPDSF_2992	-	hypothetical protein
2927	 55.67	+1	3398949..3400367	+	472	145600250	-	YPDSF_2993	-	siroheme synthase
2928	 49.17	0	3400378..3401286	+	302	145600251	-	YPDSF_2994	-	sulfate adenylyltransferase subunit 2
2929	 50.40	0	3401298..3402815	+	505	145600252	cysN	YPDSF_2995	-	sulfate adenylyltransferase subunit 1
2930	 50.16	0	3402817..3403458	+	213	145600253	-	YPDSF_2996	-	adenylylsulfate kinase
2931	 50.00	0	3403649..3403966	+	105	145600254	-	YPDSF_2997	-	hypothetical protein
2932	 46.11	0	3404281..3404601	+	106	145600255	ftsB	YPDSF_2998	-	cell division protein FtsB
2933	 50.69	0	3404605..3405330	+	241	145600256	ispD	YPDSF_2999	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2934	 48.26	0	3405469..3405957	+	162	145600257	ispF	YPDSF_3000	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2935	 49.43	0	3405968..3407017	+	349	145600258	truD	YPDSF_3001	-	tRNA pseudouridine synthase D
2936	 50.72	0	3406995..3407759	+	254	145600259	surE	YPDSF_3002	-	stationary phase survival protein SurE
2937	 49.60	0	3407753..3408379	+	208	145600260	pcm	YPDSF_3003	-	protein-L-isoaspartate O-methyltransferase
2938	 47.80	0	3408483..3409484	+	333	145600261	-	YPDSF_3004	-	lipoprotein NlpD
2939	 47.45	0	3409539..3410537	+	332	145600262	-	YPDSF_3005	-	RNA polymerase sigma factor RpoS
2940	 50.94	0	3410865..3413420	-	851	145600263	-	YPDSF_3006	-	DNA mismatch repair protein
2941	 45.93	0	3413917..3414051	+	44	145600264	-	YPDSF_3007	-	hypothetical protein
2942	 46.27	0	3414214..3414669	-	151	145600265	-	YPDSF_3008	-	ribose-5-phosphate isomerase B
2943	 48.92	0	3415152..3416267	+	371	145600266	-	YPDSF_3009	-	Zinc-binding dehydrogenase
2944	 49.94	0	3416331..3417101	+	256	145600267	-	YPDSF_3010	-	short chain dehydrogenase
2945	 49.70	0	3417188..3418189	+	333	145600268	-	YPDSF_3011	-	dihydroxyacetone kinase
2946	 50.67	0	3418196..3418870	+	224	145600269	-	YPDSF_3012	-	hypothetical protein
2947	 50.00	0	3418991..3419962	-	323	145600270	-	YPDSF_3013	-	transcriptional regulatory protein
2948	 50.47	0	3420517..3421806	-	429	145600271	-	YPDSF_3014	-	arsenical pump membrane protein
2949	 48.54	0	3421891..3422232	-	113	145600272	-	YPDSF_3015	-	DNA-binding transcriptional repressor ArsR
2950	 31.88	-2	3422953..3423159	-	68	145600273	-	YPDSF_3016	-	hypothetical protein
2951	 43.27	0	3423580..3424344	-	254	145600274	-	YPDSF_3017	-	extracellular solute-binding protein
2952	 46.59	0	3424415..3425794	-	459	145600275	-	YPDSF_3018	-	cytochrome C peroxidase
2953	 40.85	-1	3426031..3426336	-	101	145600276	-	YPDSF_3019	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.