IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2513	 48.13	0	2919711..2920217	-	168	145599836	-	YPDSF_2571	-	peptidoglycan-associated outer membrane lipoprotein
2514	 49.42	0	2920268..2921560	-	430	145599837	tolB	YPDSF_2572	-	translocation protein TolB
2515	 50.76	0	2921680..2922861	-	393	145599838	tolA	YPDSF_2573	-	cell envelope integrity inner membrane protein TolA
2516	 46.85	0	2922958..2923386	-	142	145599839	-	YPDSF_2574	-	colicin uptake protein TolR
2517	 48.76	0	2923399..2924085	-	228	145599840	-	YPDSF_2575	-	colicin uptake protein TolQ
2518	 47.51	0	2924085..2924486	-	133	145599841	-	YPDSF_2576	-	acyl-CoA thioester hydrolase YbgC
2519	 51.05	0	2924618..2924950	-	110	145599842	-	YPDSF_2577	-	hypothetical protein
2520	 48.42	0	2925042..2926181	-	379	145599843	-	YPDSF_2578	-	cytochrome D ubiquinol oxidase subunit II
2521	 47.48	0	2926196..2927764	-	522	145599844	-	YPDSF_2579	-	cytochrome D ubiquinol oxidase subunit I
2522	 45.97	0	2928570..2929028	-	152	145599845	-	YPDSF_2580	-	transposase for the IS1541 insertion element
2523	 48.11	0	2929242..2930114	-	290	145599846	-	YPDSF_2581	-	succinyl-CoA synthetase subunit alpha
2524	 50.99	0	2930114..2931280	-	388	145599847	sucC	YPDSF_2582	-	succinyl-CoA synthetase subunit beta
2525	 48.77	0	2931393..2932616	-	407	145599848	-	YPDSF_2583	-	dihydrolipoamide acetyltransferase
2526	 49.36	0	2932646..2935453	-	935	145599849	kgd	YPDSF_2584	-	alpha-ketoglutarate decarboxylase
2527	 46.72	0	2935809..2936525	-	238	145599850	sdhB	YPDSF_2585	-	succinate dehydrogenase iron-sulfur subunit
2528	 51.22	0	2936575..2938341	-	588	145599851	sdhA	YPDSF_2586	-	succinate dehydrogenase flavoprotein subunit
2529	 45.69	0	2938342..2938689	-	115	145599852	sdhD	YPDSF_2587	-	succinate dehydrogenase cytochrome b556 small membrane subunit
2530	 45.90	0	2938683..2939072	-	129	145599853	sdhC	YPDSF_2588	-	succinate dehydrogenase cytochrome b556 large membrane subunit
2531	 48.56	0	2939782..2941062	+	426	145599854	gltA	YPDSF_2589	-	type II citrate synthase
2532	 47.50	0	2941170..2941748	-	192	145599855	-	YPDSF_2590	-	heat shock protein GrpE
2533	 47.05	0	2941872..2942753	+	293	145599856	ppnK	YPDSF_2591	-	inorganic polyphosphate/ATP-NAD kinase
2534	 46.21	0	2942840..2944501	+	553	145599857	-	YPDSF_2592	-	recombination and repair protein
2535	 45.91	0	2944615..2944956	+	113	145599858	-	YPDSF_2593	-	hypothetical protein
2536	 47.37	0	2945106..2945390	-	94	145599859	-	YPDSF_2594	-	hypothetical protein
2537	 43.45	0	2945383..2945817	-	144	145599860	-	YPDSF_2595	-	hypothetical protein
2538	 45.86	0	2945966..2946460	+	164	145599861	smpB	YPDSF_2596	-	SsrA-binding protein
2539	 45.75	0	2947095..2947553	+	152	145599862	-	YPDSF_2597	-	transposase for the IS1541 insertion element
2540	 45.92	0	2947777..2948976	+	399	145599863	-	YPDSF_2598	-	prophage integrase
2541	 33.15	-2	2949055..2950143	+	362	145599864	-	YPDSF_2599	-	hypothetical protein
2542	 33.16	-2	2950194..2951339	+	381	145599865	-	YPDSF_2600	-	hypothetical protein
2543	 32.13	-2	2951615..2951863	+	82	145599866	-	YPDSF_2601	-	hypothetical protein
2544	 53.40	+1	2952715..2953038	+	107	145599867	-	YPDSF_2602	-	hypothetical protein
2545	 52.25	0	2953060..2953947	+	295	145599868	-	YPDSF_2603	-	putative DNA-binding prophage protein
2546	 40.30	-1	2953940..2954140	+	66	145599869	-	YPDSF_2604	-	transcriptional regulator
2547	 50.64	0	2954140..2954682	+	180	145599870	-	YPDSF_2605	-	prophage protein
2548	 51.46	0	2954675..2955634	+	319	145599871	-	YPDSF_2606	-	prophage DNA primase
2549	 54.09	+1	2955631..2956719	+	362	145599872	-	YPDSF_2607	-	regulatory prophage protein
2550	 46.67	0	2957068..2957382	-	104	145599873	-	YPDSF_2608	-	DNA-binding prophage protein
2551	 46.23	0	2957388..2957705	-	105	145599874	-	YPDSF_2609	-	prophage protein
2552	 49.72	0	2958120..2958296	+	58	145599875	-	YPDSF_2610	-	hypothetical protein
2553	 52.79	0	2958310..2959332	+	340	145599876	-	YPDSF_2611	-	transposase
2554	 50.38	0	2959332..2960111	+	259	145599877	-	YPDSF_2612	-	transposase/IS protein
2555	 45.08	0	2960658..2960921	+	87	145599878	-	YPDSF_2614	-	IS1400 transposase A
2556	 48.57	0	2962314..2963081	+	255	145599879	-	YPDSF_2616	-	hypothetical protein
2557	 49.65	0	2963413..2963700	+	95	145599880	-	YPDSF_2617	-	LexA regulated protein
2558	 47.39	0	2963796..2964044	+	82	145599881	-	YPDSF_2618	-	hypothetical protein
2559	 47.16	0	2964117..2964644	+	175	145599882	-	YPDSF_2619	-	flavodoxin FldA
2560	 42.73	-1	2965011..2965457	+	148	145599883	fur	YPDSF_2620	-	ferric uptake regulator
2561	 51.17	0	2965898..2968000	-	700	145599884	-	YPDSF_2621	-	Beta-N-acetylhexosaminidase
2562	 46.31	0	2967939..2968562	-	207	145599885	-	YPDSF_2622	-	hypothetical protein
2563	 48.80	0	2968890..2970311	-	473	145599886	-	YPDSF_2623	-	hypothetical protein
2564	 49.58	0	2971017..2972684	-	555	145599887	-	YPDSF_2624	-	glutaminyl-tRNA synthetase
2565	 49.41	0	2972899..2974932	-	677	145599888	-	YPDSF_2625	-	pts system, N-acetylglucosamine-specific IIABC component
2566	 47.07	0	2975332..2976132	+	266	145599889	nagB	YPDSF_2626	-	glucosamine-6-phosphate deaminase
2567	 48.34	0	2976152..2977297	+	381	145599890	nagA	YPDSF_2627	-	N-acetylglucosamine-6-phosphate deacetylase
2568	 49.68	0	2977275..2978540	+	421	145599891	-	YPDSF_2628	-	N-acetylglucosamine regulatory protein
2569	 49.27	0	2978613..2979365	+	250	145599892	-	YPDSF_2629	-	UMP phosphatase
2570	 49.19	0	2979720..2981384	+	554	145599893	asnB	YPDSF_2630	-	asparagine synthetase B
2571	 53.55	+1	2982855..2984036	-	393	145599894	ubiF	YPDSF_2631	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2572	 48.19	0	2984263..2985702	+	479	145599895	-	YPDSF_2632	-	tRNA-thiotransferase
2573	 50.00	0	2986029..2987102	+	357	145599896	-	YPDSF_2633	-	hypothetical protein
2574	 47.05	0	2987099..2987572	+	157	145599897	-	YPDSF_2634	-	putative metalloprotease
2575	 43.14	-1	2987552..2987704	-	50	145599898	-	YPDSF_2635	-	hypothetical protein
2576	 46.08	0	2987690..2988568	+	292	145599899	-	YPDSF_2636	-	membrane protein
2577	 50.85	0	2988537..2990123	+	528	145599900	lnt	YPDSF_2637	-	apolipoprotein N-acyltransferase
2578	 45.32	0	2990888..2991805	+	305	145599901	-	YPDSF_2638	-	glutamate and aspartate transporter subunit
2579	 47.37	0	2991979..2992719	+	246	145599902	-	YPDSF_2639	-	glutamate/aspartate transport system permease
2580	 48.30	0	2992719..2993393	+	224	145599903	-	YPDSF_2640	-	glutamate/aspartate transport system permease
2581	 45.18	0	2993393..2994118	+	241	145599904	-	YPDSF_2641	-	glutamate/aspartate transport ATP-binding protein
2582	 49.07	0	2994252..2994734	-	160	145599905	-	YPDSF_2642	-	hypothetical protein
2583	 51.06	0	2994995..2997577	+	860	145599906	leuS	YPDSF_2643	-	leucyl-tRNA synthetase
2584	 52.08	0	2997592..2998215	+	207	145599907	-	YPDSF_2644	-	LPS-assembly lipoprotein RplB
2585	 50.05	0	2998212..2999246	+	344	145599908	holA	YPDSF_2645	-	DNA polymerase III subunit delta
2586	 49.02	0	2999236..2999898	+	220	145599909	nadD	YPDSF_2646	-	nicotinic acid mononucleotide adenylyltransferase
2587	 48.74	0	3000122..3000439	+	105	145599910	-	YPDSF_2647	-	hypothetical protein
2588	 52.65	0	3000443..3000913	+	156	145599911	-	YPDSF_2648	-	SPOUT methyltransferase superfamily protein
2589	 49.26	0	3000995..3002890	+	631	145599912	-	YPDSF_2649	-	penicillin-binding protein 2
2590	 47.80	0	3003090..3004202	+	370	145599913	-	YPDSF_2650	-	cell wall shape-determining protein
2591	 53.09	+1	3004212..3005294	+	360	145599914	-	YPDSF_2651	-	rare lipoprotein A
2592	 48.71	0	3005697..3006899	+	400	145599915	-	YPDSF_2652	-	D-alanyl-D-alanine carboxypeptidase fraction A
2593	 47.35	0	3007097..3007360	+	87	145599916	-	YPDSF_2653	-	hypothetical protein
2594	 49.00	0	3007572..3008273	+	233	145599917	lipB	YPDSF_2654	-	lipoyltransferase
2595	 50.10	0	3008466..3009431	+	321	145599918	-	YPDSF_2655	-	lipoyl synthase
2596	 46.51	0	3009612..3009869	-	85	145599919	tatE	YPDSF_2656	-	twin argininte translocase protein A
2597	 34.64	-2	3009924..3010076	-	50	145599920	-	YPDSF_2657	-	hypothetical protein
2598	 46.88	0	3010436..3010819	+	127	145599921	-	YPDSF_2658	-	membrane protein
2599	 42.86	-1	3011242..3011451	-	69	145599922	cspE	YPDSF_2659	-	cold shock protein CspE
2600	 36.18	-2	3011718..3012209	+	163	145599923	-	YPDSF_2660	-	hypothetical protein
2601	 35.76	-2	3012539..3013156	-	205	145599924	-	YPDSF_2661	-	LuxR family regulatory protein
2602	 38.01	-2	3013690..3014544	+	284	145599925	-	YPDSF_2662	-	hypothetical protein
2603	 42.71	-1	3014621..3014908	+	95	145599926	-	YPDSF_2663	-	hypothetical protein
2604	 36.92	-2	3014926..3015120	-	64	145599927	-	YPDSF_2664	-	hypothetical protein
2605	 39.24	-1	3015563..3015850	+	95	145599928	-	YPDSF_2665	-	hypothetical protein
2606	 46.73	0	3015866..3017656	-	596	145599929	-	YPDSF_2666	-	ABC transport protein
2607	 53.06	+1	3018226..3019041	-	271	145599930	-	YPDSF_2667	-	hypothetical protein
2608	 53.16	+1	3019051..3020109	-	352	145599931	-	YPDSF_2668	-	hypothetical protein
2609	 55.76	+1	3020124..3022094	-	656	145599932	-	YPDSF_2669	-	carbohydrate kinase
2610	 56.35	+1	3022126..3023259	-	377	145599933	-	YPDSF_2670	-	hypothetical protein
2611	 54.03	+1	3023283..3024311	-	342	145599934	-	YPDSF_2671	-	sugar transport system permease protein
2612	 54.13	+1	3024323..3025870	-	515	145599935	-	YPDSF_2672	-	sugar transport ATP-binding protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.