version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2458 41.29 -1 2860936..2861865 - 309 145599781 - YPDSF_2512 - substrate-binding periplasmic transport protein 2459 41.24 -1 2861902..2862774 - 290 145599782 - YPDSF_2513 - ABC transport ATP-binding subunit 2460 43.37 0 2862946..2863194 - 82 145599783 - YPDSF_2514 - hypothetical protein 2461 47.55 0 2863379..2864482 - 367 145599784 - YPDSF_2515 - hypothetical protein 2462 40.35 -1 2864624..2864794 - 56 145599785 - YPDSF_2516 - hypothetical protein 2463 42.40 -1 2864795..2865136 + 113 145599786 - YPDSF_2517 - hypothetical protein 2464 43.33 0 2865162..2865701 - 179 145599787 - YPDSF_2518 - adenylate cyclase 2 2465 45.59 0 2865911..2867623 + 570 145599788 - YPDSF_2519 - D-lactate dehydrogenase 2466 45.37 0 2867744..2868715 - 323 145599789 pbpG YPDSF_2520 - D-alanyl-D-alanine endopeptidase 2467 37.22 -2 2869018..2869197 + 59 145599790 - YPDSF_2521 - hypothetical protein 2468 48.68 0 2869271..2870215 - 314 145599791 - YPDSF_2522 - tRNA-dihydrouridine synthase C 2469 34.30 -2 2870509..2871438 - 309 145599792 - YPDSF_2523 - hypothetical protein 2470 45.75 0 2871853..2872311 - 152 145599793 - YPDSF_2524 - transposase for the IS1541 insertion element 2471 43.70 0 2872301..2873101 - 266 145599794 - YPDSF_2525 - hypothetical protein 2472 45.02 0 2873240..2874103 - 287 145599795 - YPDSF_2526 - purine nucleoside phosphorylase 2473 45.46 0 2874416..2875297 + 293 145599796 - YPDSF_2527 - membrane protein 2474 43.29 0 2875335..2876228 - 297 145599797 - YPDSF_2528 - DNA-binding transcriptional activator XapR 2475 49.44 0 2876460..2878508 - 682 145599798 - YPDSF_2529 - choline transport protein BetT 2476 50.08 0 2878873..2879469 + 198 145599799 - YPDSF_2530 - transcriptional regulator BetI 2477 54.04 +1 2879527..2880999 + 490 145599800 - YPDSF_2531 - betaine aldehyde dehydrogenase 2478 53.17 +1 2881022..2882725 + 567 145599801 - YPDSF_2532 - choline dehydrogenase 2479 45.75 0 2882954..2883412 - 152 145599802 - YPDSF_2533 - transposase for the IS1541 insertion element 2480 47.40 0 2883647..2884357 - 236 145599803 - YPDSF_2534 - membrane protein 2481 54.30 +1 2884500..2884952 - 150 145599804 MoaE YPDSF_2535 - molybdopterin synthase large subunit 2482 52.85 0 2884955..2885200 - 81 145599805 moaD YPDSF_2536 - molybdopterin synthase small subunit 2483 53.33 +1 2885197..2885676 - 159 145599806 moaC YPDSF_2537 - molybdenum cofactor biosynthesis protein C 2484 49.12 0 2885777..2886802 - 341 145599807 moaA YPDSF_2538 - molybdenum cofactor biosynthesis protein A 2485 50.32 0 2887289..2888212 + 307 145599808 - YPDSF_2539 - hypothetical protein 2486 45.53 0 2888343..2888588 - 81 145599809 - YPDSF_2540 - hypothetical protein 2487 49.95 0 2888880..2890895 - 671 145599810 - YPDSF_2541 - excinuclease ABC subunit B 2488 50.21 0 2891986..2892696 + 236 145599811 - YPDSF_2542 - amino acid transporter 2489 54.22 +1 2892848..2893570 - 240 145599812 bioD YPDSF_2543 - dithiobiotin synthetase 2490 53.86 +1 2893563..2894366 - 267 145599813 - YPDSF_2544 - biotin synthesis protein BioC 2491 58.07 +2 2894350..2895501 - 383 145599814 - YPDSF_2545 - 8-amino-7-oxononanoate synthase 2492 51.06 0 2895501..2896538 - 345 145599815 - YPDSF_2546 - biotin synthase 2493 53.40 +1 2896637..2897917 + 426 145599816 - YPDSF_2547 - adenosylmethionine--8-amino-7-oxononanoate transaminase 2494 51.84 0 2898102..2899106 - 334 145599817 - YPDSF_2548 - 6-phosphogluconolactonase 2495 52.07 0 2899397..2900218 + 273 145599818 - YPDSF_2549 - phosphotransferase 2496 54.26 +1 2900274..2901353 - 359 145599819 modC YPDSF_2550 - molybdate transporter ATP-binding protein 2497 54.17 +1 2901347..2902042 - 231 145599820 modB YPDSF_2551 - molybdate ABC transporter permease protein 2498 50.77 0 2902042..2902821 - 259 145599821 modA YPDSF_2552 - molybdate transporter periplasmic protein 2499 47.06 0 2903056..2903208 - 50 145599822 - YPDSF_2553 - hypothetical protein 2500 51.01 0 2903474..2904265 + 263 145599823 - YPDSF_2554 - DNA-binding transcriptional regulator ModE 2501 51.98 0 2904375..2905865 + 496 145599824 - YPDSF_2555 - putative molybdenum transport ATP-binding protein ModF 2502 52.41 0 2907255..2908271 + 338 145599825 - YPDSF_2558 - UDP-galactose-4-epimerase 2503 52.04 0 2908281..2909333 + 350 145599826 - YPDSF_2559 - galactose-1-phosphate uridylyltransferase 2504 51.22 0 2909330..2910481 + 383 145599827 - YPDSF_2560 - galactokinase 2505 49.02 0 2910475..2910627 + 50 145599828 - YPDSF_2561 - hypothetical protein 2506 52.29 0 2910648..2911544 + 298 145599829 galM YPDSF_2562 - aldose 1-epimerase 2507 50.00 0 2911837..2912172 + 111 145599830 - YPDSF_2563 - starvation-inducible protein 2508 47.14 0 2912519..2913271 + 250 145599831 - YPDSF_2564 - phosphoglycerate mutase 1 2509 47.39 0 2914928..2915866 + 312 145599832 - YPDSF_2567 - zinc transporter ZitB 2510 46.14 0 2915981..2916706 - 241 145599833 - YPDSF_2568 - intergral membrane NMN transport protein PnuC 2511 50.75 0 2916828..2917889 - 353 145599834 - YPDSF_2569 - quinolinate synthetase 2512 47.28 0 2918892..2919701 - 269 145599835 - YPDSF_2570 - hypothetical protein 2513 48.13 0 2919711..2920217 - 168 145599836 - YPDSF_2571 - peptidoglycan-associated outer membrane lipoprotein 2514 49.42 0 2920268..2921560 - 430 145599837 tolB YPDSF_2572 - translocation protein TolB 2515 50.76 0 2921680..2922861 - 393 145599838 tolA YPDSF_2573 - cell envelope integrity inner membrane protein TolA 2516 46.85 0 2922958..2923386 - 142 145599839 - YPDSF_2574 - colicin uptake protein TolR 2517 48.76 0 2923399..2924085 - 228 145599840 - YPDSF_2575 - colicin uptake protein TolQ 2518 47.51 0 2924085..2924486 - 133 145599841 - YPDSF_2576 - acyl-CoA thioester hydrolase YbgC 2519 51.05 0 2924618..2924950 - 110 145599842 - YPDSF_2577 - hypothetical protein 2520 48.42 0 2925042..2926181 - 379 145599843 - YPDSF_2578 - cytochrome D ubiquinol oxidase subunit II 2521 47.48 0 2926196..2927764 - 522 145599844 - YPDSF_2579 - cytochrome D ubiquinol oxidase subunit I 2522 45.97 0 2928570..2929028 - 152 145599845 - YPDSF_2580 - transposase for the IS1541 insertion element 2523 48.11 0 2929242..2930114 - 290 145599846 - YPDSF_2581 - succinyl-CoA synthetase subunit alpha 2524 50.99 0 2930114..2931280 - 388 145599847 sucC YPDSF_2582 - succinyl-CoA synthetase subunit beta 2525 48.77 0 2931393..2932616 - 407 145599848 - YPDSF_2583 - dihydrolipoamide acetyltransferase 2526 49.36 0 2932646..2935453 - 935 145599849 kgd YPDSF_2584 - alpha-ketoglutarate decarboxylase 2527 46.72 0 2935809..2936525 - 238 145599850 sdhB YPDSF_2585 - succinate dehydrogenase iron-sulfur subunit 2528 51.22 0 2936575..2938341 - 588 145599851 sdhA YPDSF_2586 - succinate dehydrogenase flavoprotein subunit 2529 45.69 0 2938342..2938689 - 115 145599852 sdhD YPDSF_2587 - succinate dehydrogenase cytochrome b556 small membrane subunit 2530 45.90 0 2938683..2939072 - 129 145599853 sdhC YPDSF_2588 - succinate dehydrogenase cytochrome b556 large membrane subunit 2531 48.56 0 2939782..2941062 + 426 145599854 gltA YPDSF_2589 - type II citrate synthase 2532 47.50 0 2941170..2941748 - 192 145599855 - YPDSF_2590 - heat shock protein GrpE 2533 47.05 0 2941872..2942753 + 293 145599856 ppnK YPDSF_2591 - inorganic polyphosphate/ATP-NAD kinase 2534 46.21 0 2942840..2944501 + 553 145599857 - YPDSF_2592 - recombination and repair protein 2535 45.91 0 2944615..2944956 + 113 145599858 - YPDSF_2593 - hypothetical protein 2536 47.37 0 2945106..2945390 - 94 145599859 - YPDSF_2594 - hypothetical protein 2537 43.45 0 2945383..2945817 - 144 145599860 - YPDSF_2595 - hypothetical protein 2538 45.86 0 2945966..2946460 + 164 145599861 smpB YPDSF_2596 - SsrA-binding protein 2539 45.75 0 2947095..2947553 + 152 145599862 - YPDSF_2597 - transposase for the IS1541 insertion element 2540 45.92 0 2947777..2948976 + 399 145599863 - YPDSF_2598 - prophage integrase 2541 33.15 -2 2949055..2950143 + 362 145599864 - YPDSF_2599 - hypothetical protein 2542 33.16 -2 2950194..2951339 + 381 145599865 - YPDSF_2600 - hypothetical protein 2543 32.13 -2 2951615..2951863 + 82 145599866 - YPDSF_2601 - hypothetical protein 2544 53.40 +1 2952715..2953038 + 107 145599867 - YPDSF_2602 - hypothetical protein 2545 52.25 0 2953060..2953947 + 295 145599868 - YPDSF_2603 - putative DNA-binding prophage protein 2546 40.30 -1 2953940..2954140 + 66 145599869 - YPDSF_2604 - transcriptional regulator 2547 50.64 0 2954140..2954682 + 180 145599870 - YPDSF_2605 - prophage protein 2548 51.46 0 2954675..2955634 + 319 145599871 - YPDSF_2606 - prophage DNA primase 2549 54.09 +1 2955631..2956719 + 362 145599872 - YPDSF_2607 - regulatory prophage protein 2550 46.67 0 2957068..2957382 - 104 145599873 - YPDSF_2608 - DNA-binding prophage protein 2551 46.23 0 2957388..2957705 - 105 145599874 - YPDSF_2609 - prophage protein 2552 49.72 0 2958120..2958296 + 58 145599875 - YPDSF_2610 - hypothetical protein 2553 52.79 0 2958310..2959332 + 340 145599876 - YPDSF_2611 - transposase 2554 50.38 0 2959332..2960111 + 259 145599877 - YPDSF_2612 - transposase/IS protein 2555 45.08 0 2960658..2960921 + 87 145599878 - YPDSF_2614 - IS1400 transposase A 2556 48.57 0 2962314..2963081 + 255 145599879 - YPDSF_2616 - hypothetical protein 2557 49.65 0 2963413..2963700 + 95 145599880 - YPDSF_2617 - LexA regulated protein 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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