IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2451	 48.51	0	2853040..2853876	-	278	145599774	-	YPDSF_2505	-	ABC transport ATP-binding subunit
2452	 50.23	0	2853873..2854949	-	358	145599775	-	YPDSF_2506	-	branched chain amino acid ABC transporter permease
2453	 50.00	0	2854949..2856550	-	533	145599776	-	YPDSF_2507	-	branched chain amino acid ABC transporter permease
2454	 49.96	0	2856674..2857942	-	422	145599777	-	YPDSF_2508	-	substrate-binding periplasmic transport protein
2455	 42.41	-1	2858370..2858843	-	157	145599778	-	YPDSF_2509	-	hypothetical protein
2456	 41.84	-1	2859089..2859970	-	293	145599779	-	YPDSF_2510	-	ABC transport membrane permease
2457	 44.02	0	2859973..2860833	-	286	145599780	-	YPDSF_2511	-	ABC transport membrane permease
2458	 41.29	-1	2860936..2861865	-	309	145599781	-	YPDSF_2512	-	substrate-binding periplasmic transport protein
2459	 41.24	-1	2861902..2862774	-	290	145599782	-	YPDSF_2513	-	ABC transport ATP-binding subunit
2460	 43.37	0	2862946..2863194	-	82	145599783	-	YPDSF_2514	-	hypothetical protein
2461	 47.55	0	2863379..2864482	-	367	145599784	-	YPDSF_2515	-	hypothetical protein
2462	 40.35	-1	2864624..2864794	-	56	145599785	-	YPDSF_2516	-	hypothetical protein
2463	 42.40	-1	2864795..2865136	+	113	145599786	-	YPDSF_2517	-	hypothetical protein
2464	 43.33	0	2865162..2865701	-	179	145599787	-	YPDSF_2518	-	adenylate cyclase 2
2465	 45.59	0	2865911..2867623	+	570	145599788	-	YPDSF_2519	-	D-lactate dehydrogenase
2466	 45.37	0	2867744..2868715	-	323	145599789	pbpG	YPDSF_2520	-	D-alanyl-D-alanine endopeptidase
2467	 37.22	-2	2869018..2869197	+	59	145599790	-	YPDSF_2521	-	hypothetical protein
2468	 48.68	0	2869271..2870215	-	314	145599791	-	YPDSF_2522	-	tRNA-dihydrouridine synthase C
2469	 34.30	-2	2870509..2871438	-	309	145599792	-	YPDSF_2523	-	hypothetical protein
2470	 45.75	0	2871853..2872311	-	152	145599793	-	YPDSF_2524	-	transposase for the IS1541 insertion element
2471	 43.70	0	2872301..2873101	-	266	145599794	-	YPDSF_2525	-	hypothetical protein
2472	 45.02	0	2873240..2874103	-	287	145599795	-	YPDSF_2526	-	purine nucleoside phosphorylase
2473	 45.46	0	2874416..2875297	+	293	145599796	-	YPDSF_2527	-	membrane protein
2474	 43.29	0	2875335..2876228	-	297	145599797	-	YPDSF_2528	-	DNA-binding transcriptional activator XapR
2475	 49.44	0	2876460..2878508	-	682	145599798	-	YPDSF_2529	-	choline transport protein BetT
2476	 50.08	0	2878873..2879469	+	198	145599799	-	YPDSF_2530	-	transcriptional regulator BetI
2477	 54.04	+1	2879527..2880999	+	490	145599800	-	YPDSF_2531	-	betaine aldehyde dehydrogenase
2478	 53.17	+1	2881022..2882725	+	567	145599801	-	YPDSF_2532	-	choline dehydrogenase
2479	 45.75	0	2882954..2883412	-	152	145599802	-	YPDSF_2533	-	transposase for the IS1541 insertion element
2480	 47.40	0	2883647..2884357	-	236	145599803	-	YPDSF_2534	-	membrane protein
2481	 54.30	+1	2884500..2884952	-	150	145599804	MoaE	YPDSF_2535	-	molybdopterin synthase large subunit
2482	 52.85	0	2884955..2885200	-	81	145599805	moaD	YPDSF_2536	-	molybdopterin synthase small subunit
2483	 53.33	+1	2885197..2885676	-	159	145599806	moaC	YPDSF_2537	-	molybdenum cofactor biosynthesis protein C
2484	 49.12	0	2885777..2886802	-	341	145599807	moaA	YPDSF_2538	-	molybdenum cofactor biosynthesis protein A
2485	 50.32	0	2887289..2888212	+	307	145599808	-	YPDSF_2539	-	hypothetical protein
2486	 45.53	0	2888343..2888588	-	81	145599809	-	YPDSF_2540	-	hypothetical protein
2487	 49.95	0	2888880..2890895	-	671	145599810	-	YPDSF_2541	-	excinuclease ABC subunit B
2488	 50.21	0	2891986..2892696	+	236	145599811	-	YPDSF_2542	-	amino acid transporter
2489	 54.22	+1	2892848..2893570	-	240	145599812	bioD	YPDSF_2543	-	dithiobiotin synthetase
2490	 53.86	+1	2893563..2894366	-	267	145599813	-	YPDSF_2544	-	biotin synthesis protein BioC
2491	 58.07	+2	2894350..2895501	-	383	145599814	-	YPDSF_2545	-	8-amino-7-oxononanoate synthase
2492	 51.06	0	2895501..2896538	-	345	145599815	-	YPDSF_2546	-	biotin synthase
2493	 53.40	+1	2896637..2897917	+	426	145599816	-	YPDSF_2547	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2494	 51.84	0	2898102..2899106	-	334	145599817	-	YPDSF_2548	-	6-phosphogluconolactonase
2495	 52.07	0	2899397..2900218	+	273	145599818	-	YPDSF_2549	-	phosphotransferase
2496	 54.26	+1	2900274..2901353	-	359	145599819	modC	YPDSF_2550	-	molybdate transporter ATP-binding protein
2497	 54.17	+1	2901347..2902042	-	231	145599820	modB	YPDSF_2551	-	molybdate ABC transporter permease protein
2498	 50.77	0	2902042..2902821	-	259	145599821	modA	YPDSF_2552	-	molybdate transporter periplasmic protein
2499	 47.06	0	2903056..2903208	-	50	145599822	-	YPDSF_2553	-	hypothetical protein
2500	 51.01	0	2903474..2904265	+	263	145599823	-	YPDSF_2554	-	DNA-binding transcriptional regulator ModE
2501	 51.98	0	2904375..2905865	+	496	145599824	-	YPDSF_2555	-	putative molybdenum transport ATP-binding protein ModF
2502	 52.41	0	2907255..2908271	+	338	145599825	-	YPDSF_2558	-	UDP-galactose-4-epimerase
2503	 52.04	0	2908281..2909333	+	350	145599826	-	YPDSF_2559	-	galactose-1-phosphate uridylyltransferase
2504	 51.22	0	2909330..2910481	+	383	145599827	-	YPDSF_2560	-	galactokinase
2505	 49.02	0	2910475..2910627	+	50	145599828	-	YPDSF_2561	-	hypothetical protein
2506	 52.29	0	2910648..2911544	+	298	145599829	galM	YPDSF_2562	-	aldose 1-epimerase
2507	 50.00	0	2911837..2912172	+	111	145599830	-	YPDSF_2563	-	starvation-inducible protein
2508	 47.14	0	2912519..2913271	+	250	145599831	-	YPDSF_2564	-	phosphoglycerate mutase 1
2509	 47.39	0	2914928..2915866	+	312	145599832	-	YPDSF_2567	-	zinc transporter ZitB
2510	 46.14	0	2915981..2916706	-	241	145599833	-	YPDSF_2568	-	intergral membrane NMN transport protein PnuC
2511	 50.75	0	2916828..2917889	-	353	145599834	-	YPDSF_2569	-	quinolinate synthetase
2512	 47.28	0	2918892..2919701	-	269	145599835	-	YPDSF_2570	-	hypothetical protein
2513	 48.13	0	2919711..2920217	-	168	145599836	-	YPDSF_2571	-	peptidoglycan-associated outer membrane lipoprotein
2514	 49.42	0	2920268..2921560	-	430	145599837	tolB	YPDSF_2572	-	translocation protein TolB
2515	 50.76	0	2921680..2922861	-	393	145599838	tolA	YPDSF_2573	-	cell envelope integrity inner membrane protein TolA
2516	 46.85	0	2922958..2923386	-	142	145599839	-	YPDSF_2574	-	colicin uptake protein TolR
2517	 48.76	0	2923399..2924085	-	228	145599840	-	YPDSF_2575	-	colicin uptake protein TolQ
2518	 47.51	0	2924085..2924486	-	133	145599841	-	YPDSF_2576	-	acyl-CoA thioester hydrolase YbgC
2519	 51.05	0	2924618..2924950	-	110	145599842	-	YPDSF_2577	-	hypothetical protein
2520	 48.42	0	2925042..2926181	-	379	145599843	-	YPDSF_2578	-	cytochrome D ubiquinol oxidase subunit II
2521	 47.48	0	2926196..2927764	-	522	145599844	-	YPDSF_2579	-	cytochrome D ubiquinol oxidase subunit I
2522	 45.97	0	2928570..2929028	-	152	145599845	-	YPDSF_2580	-	transposase for the IS1541 insertion element
2523	 48.11	0	2929242..2930114	-	290	145599846	-	YPDSF_2581	-	succinyl-CoA synthetase subunit alpha
2524	 50.99	0	2930114..2931280	-	388	145599847	sucC	YPDSF_2582	-	succinyl-CoA synthetase subunit beta
2525	 48.77	0	2931393..2932616	-	407	145599848	-	YPDSF_2583	-	dihydrolipoamide acetyltransferase
2526	 49.36	0	2932646..2935453	-	935	145599849	kgd	YPDSF_2584	-	alpha-ketoglutarate decarboxylase
2527	 46.72	0	2935809..2936525	-	238	145599850	sdhB	YPDSF_2585	-	succinate dehydrogenase iron-sulfur subunit
2528	 51.22	0	2936575..2938341	-	588	145599851	sdhA	YPDSF_2586	-	succinate dehydrogenase flavoprotein subunit
2529	 45.69	0	2938342..2938689	-	115	145599852	sdhD	YPDSF_2587	-	succinate dehydrogenase cytochrome b556 small membrane subunit
2530	 45.90	0	2938683..2939072	-	129	145599853	sdhC	YPDSF_2588	-	succinate dehydrogenase cytochrome b556 large membrane subunit
2531	 48.56	0	2939782..2941062	+	426	145599854	gltA	YPDSF_2589	-	type II citrate synthase
2532	 47.50	0	2941170..2941748	-	192	145599855	-	YPDSF_2590	-	heat shock protein GrpE
2533	 47.05	0	2941872..2942753	+	293	145599856	ppnK	YPDSF_2591	-	inorganic polyphosphate/ATP-NAD kinase
2534	 46.21	0	2942840..2944501	+	553	145599857	-	YPDSF_2592	-	recombination and repair protein
2535	 45.91	0	2944615..2944956	+	113	145599858	-	YPDSF_2593	-	hypothetical protein
2536	 47.37	0	2945106..2945390	-	94	145599859	-	YPDSF_2594	-	hypothetical protein
2537	 43.45	0	2945383..2945817	-	144	145599860	-	YPDSF_2595	-	hypothetical protein
2538	 45.86	0	2945966..2946460	+	164	145599861	smpB	YPDSF_2596	-	SsrA-binding protein
2539	 45.75	0	2947095..2947553	+	152	145599862	-	YPDSF_2597	-	transposase for the IS1541 insertion element
2540	 45.92	0	2947777..2948976	+	399	145599863	-	YPDSF_2598	-	prophage integrase
2541	 33.15	-2	2949055..2950143	+	362	145599864	-	YPDSF_2599	-	hypothetical protein
2542	 33.16	-2	2950194..2951339	+	381	145599865	-	YPDSF_2600	-	hypothetical protein
2543	 32.13	-2	2951615..2951863	+	82	145599866	-	YPDSF_2601	-	hypothetical protein
2544	 53.40	+1	2952715..2953038	+	107	145599867	-	YPDSF_2602	-	hypothetical protein
2545	 52.25	0	2953060..2953947	+	295	145599868	-	YPDSF_2603	-	putative DNA-binding prophage protein
2546	 40.30	-1	2953940..2954140	+	66	145599869	-	YPDSF_2604	-	transcriptional regulator
2547	 50.64	0	2954140..2954682	+	180	145599870	-	YPDSF_2605	-	prophage protein
2548	 51.46	0	2954675..2955634	+	319	145599871	-	YPDSF_2606	-	prophage DNA primase
2549	 54.09	+1	2955631..2956719	+	362	145599872	-	YPDSF_2607	-	regulatory prophage protein
2550	 46.67	0	2957068..2957382	-	104	145599873	-	YPDSF_2608	-	DNA-binding prophage protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.