IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2387	 46.21	0	2779806..2781242	-	478	145599710	-	YPDSF_2439	-	6-phospho-beta-glucosidase
2388	 37.65	-2	2781533..2782273	-	246	145599711	-	YPDSF_2440	-	LacI-family regulatory protein
2389	 46.92	0	2782571..2783350	-	259	145599712	-	YPDSF_2441	-	bacteriophage tail fiber protein
2390	 52.84	0	2783447..2783851	-	134	145599713	-	YPDSF_2442	-	bacteriophage protein
2391	 57.09	+1	2783791..2784051	-	86	145599714	-	YPDSF_2443	-	bacteriophage protein
2392	 54.35	+1	2784048..2785184	-	378	145599715	-	YPDSF_2444	-	bacteriophage protein
2393	 53.29	+1	2785188..2785643	-	151	145599716	-	YPDSF_2445	-	bacteriophage protein GP46
2394	 51.36	0	2785640..2786044	-	134	145599717	-	YPDSF_2446	-	bacteriophage (baseplate assembly) protein
2395	 52.27	0	2786253..2787308	-	351	145599718	-	YPDSF_2447	-	bacteriophage tail protein
2396	 55.29	+1	2787305..2788711	-	468	145599719	-	YPDSF_2448	-	bacteriophage protein
2397	 41.90	-1	2788978..2790471	-	497	145599720	-	YPDSF_2449	-	bacteriophage coat protein
2398	 49.67	0	2790592..2790891	-	99	145599721	-	YPDSF_2450	-	hypothetical protein
2399	 51.60	0	2790845..2791249	+	134	145599722	-	YPDSF_2451	-	hypothetical protein
2400	 52.57	0	2790893..2791261	-	122	145599723	-	YPDSF_2452	-	hypothetical protein
2401	 52.49	0	2791283..2792791	-	502	145599724	-	YPDSF_2453	-	bacteriophage tail sheath protein
2402	 51.79	0	2792788..2792982	-	64	145599725	-	YPDSF_2454	-	bacteriophage protein
2403	 51.94	0	2792987..2793604	-	205	145599726	-	YPDSF_2455	-	ATP-binding protein
2404	 39.86	-1	2793650..2793940	-	96	145599727	-	YPDSF_2456	-	bacteriophage protein
2405	 44.40	0	2794537..2795331	-	264	145599728	-	YPDSF_2457	-	hypothetical protein
2406	 48.34	0	2795307..2796119	-	270	145599729	-	YPDSF_2458	-	transcriptional regulatory protein
2407	 52.19	0	2796122..2796853	-	243	145599730	-	YPDSF_2459	-	putative aldolase
2408	 51.26	0	2796850..2798154	-	434	145599731	-	YPDSF_2460	-	hypothetical protein
2409	 47.08	0	2798365..2798844	-	159	145599732	-	YPDSF_2461	-	phage antitermination protein Q
2410	 47.72	0	2799118..2799840	+	240	145599733	-	YPDSF_2462	-	prophage repressor protein
2411	 35.96	-2	2799890..2800003	-	37	145599734	-	YPDSF_2463	-	hypothetical protein
2412	 44.03	0	2800046..2800288	+	80	145599735	-	YPDSF_2464	-	stress response protein
2413	 40.38	-1	2800460..2801395	+	311	145599736	-	YPDSF_2465	-	outer membrane protease
2414	 50.45	0	2801877..2803664	+	595	145599737	-	YPDSF_2466	-	methyl-accepting chemotaxis protein
2415	 49.39	0	2803738..2804727	-	329	145599738	-	YPDSF_2467	-	hypothetical protein
2416	 47.15	0	2805143..2806669	+	508	145599739	-	YPDSF_2468	-	putative transport protein
2417	 49.79	0	2806944..2808110	+	388	145599740	-	YPDSF_2469	-	beta-lactamase/D-alanine carboxypeptidase
2418	 44.35	0	2808850..2809965	-	371	145599741	-	YPDSF_2470	-	outer membrane porin protein C
2419	 43.01	-1	2812245..2814197	+	650	145599742	-	YPDSF_2473	-	hypothetical protein
2420	 39.09	-1	2814365..2814937	+	190	145599743	-	YPDSF_2474	-	two-component sensor protein like yojN
2421	 39.60	-1	2814940..2815593	+	217	145599744	-	YPDSF_2475	-	transcriptional regulator RcsB
2422	 43.87	0	2815661..2818441	-	926	145599745	-	YPDSF_2476	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2423	 49.70	0	2818722..2821397	-	891	145599746	-	YPDSF_2477	-	DNA gyrase subunit A
2424	 49.93	0	2821659..2822387	+	242	145599747	-	YPDSF_2478	-	3-demethylubiquinone-9 3-methyltransferase
2425	 48.58	0	2822881..2825169	+	762	145599748	-	YPDSF_2479	-	ribonucleotide-diphosphate reductase subunit alpha
2426	 45.80	0	2825332..2826462	+	376	145599749	nrdB	YPDSF_2480	-	ribonucleotide-diphosphate reductase subunit beta
2427	 49.22	0	2826466..2826723	+	85	145599750	-	YPDSF_2481	-	2Fe-2S ferredoxin YfaE
2428	 47.06	0	2826758..2827267	+	169	145599751	-	YPDSF_2482	-	ecotin precursor
2429	 53.94	+1	2827325..2828518	-	397	145599752	-	YPDSF_2483	-	competence damage-inducible protein A
2430	 49.55	0	2829137..2830345	+	402	145599753	-	YPDSF_2484	-	tyrosine-specific transport protein
2431	 53.04	+1	2830602..2831144	-	180	145599754	-	YPDSF_2485	-	hypothetical protein
2432	 49.44	0	2831505..2832944	+	479	145599755	-	YPDSF_2486	-	catalase
2433	 49.24	0	2833012..2835192	-	726	145599756	dinG	YPDSF_2487	-	ATP-dependent DNA helicase DinG
2434	 41.67	-1	2835462..2836577	+	371	145599757	-	YPDSF_2488	-	outer membrane protein C2
2435	 44.81	0	2836614..2836796	-	60	145599758	-	YPDSF_2489	-	hypothetical protein
2436	 49.94	0	2836989..2837879	+	296	145599759	-	YPDSF_2490	-	hypothetical protein
2437	 50.23	0	2837989..2838207	+	72	145599760	-	YPDSF_2491	-	hypothetical protein
2438	 49.07	0	2838325..2839347	-	340	145599761	-	YPDSF_2492	-	amino acid decarboxylase
2439	 49.55	0	2839432..2840640	-	402	145599762	-	YPDSF_2493	-	transposase for the IS285 insertion element
2440	 44.81	0	2840674..2841954	-	426	145599763	-	YPDSF_2494	-	amino acid decarboxylase
2441	 47.12	0	2842024..2843358	-	444	145599764	-	YPDSF_2495	-	arginine:agmatin antiporter
2442	 25.44	-2	2843633..2843860	+	75	145599765	-	YPDSF_2496	-	hypothetical protein
2443	 50.30	0	2843914..2844750	-	278	145599766	-	YPDSF_2497	-	ABC transport integral membrane subunit
2444	 48.03	0	2844747..2845685	-	312	145599767	-	YPDSF_2498	-	ABC transport ATP-binding subunit
2445	 48.48	0	2845682..2846836	-	384	145599768	-	YPDSF_2499	-	ABC transport integral membrane subunit
2446	 48.34	0	2847097..2848029	-	310	145599769	-	YPDSF_2500	-	hypothetical protein
2447	 51.11	0	2848765..2849619	+	284	145599770	-	YPDSF_2501	-	sulfurtransferase
2448	 47.95	0	2849837..2851252	-	471	145599771	-	YPDSF_2502	-	pyridoxal-dependent decarboxylase
2449	 46.97	0	2851276..2852133	-	285	145599772	-	YPDSF_2503	-	hypothetical protein
2450	 50.21	0	2852248..2852946	-	232	145599773	-	YPDSF_2504	-	ABC transport ATP-binding subunit
2451	 48.51	0	2853040..2853876	-	278	145599774	-	YPDSF_2505	-	ABC transport ATP-binding subunit
2452	 50.23	0	2853873..2854949	-	358	145599775	-	YPDSF_2506	-	branched chain amino acid ABC transporter permease
2453	 50.00	0	2854949..2856550	-	533	145599776	-	YPDSF_2507	-	branched chain amino acid ABC transporter permease
2454	 49.96	0	2856674..2857942	-	422	145599777	-	YPDSF_2508	-	substrate-binding periplasmic transport protein
2455	 42.41	-1	2858370..2858843	-	157	145599778	-	YPDSF_2509	-	hypothetical protein
2456	 41.84	-1	2859089..2859970	-	293	145599779	-	YPDSF_2510	-	ABC transport membrane permease
2457	 44.02	0	2859973..2860833	-	286	145599780	-	YPDSF_2511	-	ABC transport membrane permease
2458	 41.29	-1	2860936..2861865	-	309	145599781	-	YPDSF_2512	-	substrate-binding periplasmic transport protein
2459	 41.24	-1	2861902..2862774	-	290	145599782	-	YPDSF_2513	-	ABC transport ATP-binding subunit
2460	 43.37	0	2862946..2863194	-	82	145599783	-	YPDSF_2514	-	hypothetical protein
2461	 47.55	0	2863379..2864482	-	367	145599784	-	YPDSF_2515	-	hypothetical protein
2462	 40.35	-1	2864624..2864794	-	56	145599785	-	YPDSF_2516	-	hypothetical protein
2463	 42.40	-1	2864795..2865136	+	113	145599786	-	YPDSF_2517	-	hypothetical protein
2464	 43.33	0	2865162..2865701	-	179	145599787	-	YPDSF_2518	-	adenylate cyclase 2
2465	 45.59	0	2865911..2867623	+	570	145599788	-	YPDSF_2519	-	D-lactate dehydrogenase
2466	 45.37	0	2867744..2868715	-	323	145599789	pbpG	YPDSF_2520	-	D-alanyl-D-alanine endopeptidase
2467	 37.22	-2	2869018..2869197	+	59	145599790	-	YPDSF_2521	-	hypothetical protein
2468	 48.68	0	2869271..2870215	-	314	145599791	-	YPDSF_2522	-	tRNA-dihydrouridine synthase C
2469	 34.30	-2	2870509..2871438	-	309	145599792	-	YPDSF_2523	-	hypothetical protein
2470	 45.75	0	2871853..2872311	-	152	145599793	-	YPDSF_2524	-	transposase for the IS1541 insertion element
2471	 43.70	0	2872301..2873101	-	266	145599794	-	YPDSF_2525	-	hypothetical protein
2472	 45.02	0	2873240..2874103	-	287	145599795	-	YPDSF_2526	-	purine nucleoside phosphorylase
2473	 45.46	0	2874416..2875297	+	293	145599796	-	YPDSF_2527	-	membrane protein
2474	 43.29	0	2875335..2876228	-	297	145599797	-	YPDSF_2528	-	DNA-binding transcriptional activator XapR
2475	 49.44	0	2876460..2878508	-	682	145599798	-	YPDSF_2529	-	choline transport protein BetT
2476	 50.08	0	2878873..2879469	+	198	145599799	-	YPDSF_2530	-	transcriptional regulator BetI
2477	 54.04	+1	2879527..2880999	+	490	145599800	-	YPDSF_2531	-	betaine aldehyde dehydrogenase
2478	 53.17	+1	2881022..2882725	+	567	145599801	-	YPDSF_2532	-	choline dehydrogenase
2479	 45.75	0	2882954..2883412	-	152	145599802	-	YPDSF_2533	-	transposase for the IS1541 insertion element
2480	 47.40	0	2883647..2884357	-	236	145599803	-	YPDSF_2534	-	membrane protein
2481	 54.30	+1	2884500..2884952	-	150	145599804	MoaE	YPDSF_2535	-	molybdopterin synthase large subunit
2482	 52.85	0	2884955..2885200	-	81	145599805	moaD	YPDSF_2536	-	molybdopterin synthase small subunit
2483	 53.33	+1	2885197..2885676	-	159	145599806	moaC	YPDSF_2537	-	molybdenum cofactor biosynthesis protein C
2484	 49.12	0	2885777..2886802	-	341	145599807	moaA	YPDSF_2538	-	molybdenum cofactor biosynthesis protein A
2485	 50.32	0	2887289..2888212	+	307	145599808	-	YPDSF_2539	-	hypothetical protein
2486	 45.53	0	2888343..2888588	-	81	145599809	-	YPDSF_2540	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.