IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2357	 60.46	+2	2745787..2746737	+	316	145599680	-	YPDSF_2408	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2358	 58.70	+2	2746748..2747563	+	271	145599681	-	YPDSF_2409	-	short chain oxidoreductase
2359	 54.12	+1	2747632..2747886	-	84	145599682	-	YPDSF_2410	-	hypothetical protein
2360	 51.49	0	2748261..2749505	+	414	145599683	-	YPDSF_2411	-	tryptophan-specific transport protein
2361	 46.07	0	2749609..2750181	+	190	145599684	-	YPDSF_2412	-	elongation factor P
2362	 49.83	0	2750321..2751514	-	397	145599685	-	YPDSF_2413	-	mannonate dehydratase
2363	 51.32	0	2752118..2753590	+	490	145599686	-	YPDSF_2414	-	D-mannonate oxidoreductase
2364	 49.93	0	2753734..2754414	-	226	145599687	-	YPDSF_2415	-	transcriptional regulatory protein
2365	 48.15	0	2754386..2754520	-	44	145599688	-	YPDSF_2416	-	transcriptional regulatory protein
2366	 48.37	0	2755271..2756254	+	327	145599689	-	YPDSF_2417	-	cobalamin synthesis protein
2367	 45.87	0	2756313..2757014	+	233	145599690	-	YPDSF_2418	-	hypothetical protein
2368	 46.32	0	2757456..2758040	+	194	145599691	-	YPDSF_2419	-	putative outer membrane lipoprotein
2369	 42.77	-1	2758736..2760208	+	490	145599692	-	YPDSF_2420	-	hypothetical protein
2370	 47.54	0	2760290..2762098	+	602	145599693	-	YPDSF_2421	-	substrate-binding transport protein
2371	 48.05	0	2762108..2763208	+	366	145599694	-	YPDSF_2422	-	ABC transporter integral membrane subunit
2372	 50.05	0	2763208..2764236	+	342	145599695	-	YPDSF_2423	-	ABC transporter integral membrane subunit
2373	 51.54	0	2764238..2765830	+	530	145599696	-	YPDSF_2424	-	ABC transporter ATP-binding subunit
2374	 50.14	0	2765891..2766235	-	114	145599697	-	YPDSF_2425	-	hypothetical protein
2375	 30.19	-2	2766649..2766807	-	52	145599698	-	YPDSF_2426	-	hypothetical protein
2376	 50.08	0	2767220..2768419	-	399	145599699	-	YPDSF_2427	-	bicyclomycin/multidrug efflux system
2377	 51.98	0	2768523..2769230	-	235	145599700	-	YPDSF_2428	-	16S rRNA pseudouridylate synthase A
2378	 52.56	0	2769764..2771521	+	585	145599701	-	YPDSF_2429	-	DEAD box helicase family protein
2379	 46.32	0	2771683..2771967	+	94	145599702	-	YPDSF_2430	-	50S ribosomal protein L25
2380	 45.97	0	2772106..2772564	-	152	145599703	-	YPDSF_2431	-	transposase for the IS1541 insertion element
2381	 48.46	0	2772765..2773769	-	334	145599704	-	YPDSF_2432	-	nucleoid-associated protein NdpA
2382	 46.93	0	2773947..2774174	+	75	145599705	-	YPDSF_2433	-	hypothetical protein
2383	 49.30	0	2774202..2775998	+	598	145599706	-	YPDSF_2434	-	membrane protein
2384	 48.48	0	2776969..2778117	+	382	145599707	-	YPDSF_2436	-	hypothetical protein
2385	 39.06	-1	2778130..2778618	+	162	145599708	-	YPDSF_2437	-	hypothetical protein
2386	 51.61	0	2778889..2778981	+	30	145599709	-	YPDSF_2438	-	hypothetical protein
2387	 46.21	0	2779806..2781242	-	478	145599710	-	YPDSF_2439	-	6-phospho-beta-glucosidase
2388	 37.65	-2	2781533..2782273	-	246	145599711	-	YPDSF_2440	-	LacI-family regulatory protein
2389	 46.92	0	2782571..2783350	-	259	145599712	-	YPDSF_2441	-	bacteriophage tail fiber protein
2390	 52.84	0	2783447..2783851	-	134	145599713	-	YPDSF_2442	-	bacteriophage protein
2391	 57.09	+1	2783791..2784051	-	86	145599714	-	YPDSF_2443	-	bacteriophage protein
2392	 54.35	+1	2784048..2785184	-	378	145599715	-	YPDSF_2444	-	bacteriophage protein
2393	 53.29	+1	2785188..2785643	-	151	145599716	-	YPDSF_2445	-	bacteriophage protein GP46
2394	 51.36	0	2785640..2786044	-	134	145599717	-	YPDSF_2446	-	bacteriophage (baseplate assembly) protein
2395	 52.27	0	2786253..2787308	-	351	145599718	-	YPDSF_2447	-	bacteriophage tail protein
2396	 55.29	+1	2787305..2788711	-	468	145599719	-	YPDSF_2448	-	bacteriophage protein
2397	 41.90	-1	2788978..2790471	-	497	145599720	-	YPDSF_2449	-	bacteriophage coat protein
2398	 49.67	0	2790592..2790891	-	99	145599721	-	YPDSF_2450	-	hypothetical protein
2399	 51.60	0	2790845..2791249	+	134	145599722	-	YPDSF_2451	-	hypothetical protein
2400	 52.57	0	2790893..2791261	-	122	145599723	-	YPDSF_2452	-	hypothetical protein
2401	 52.49	0	2791283..2792791	-	502	145599724	-	YPDSF_2453	-	bacteriophage tail sheath protein
2402	 51.79	0	2792788..2792982	-	64	145599725	-	YPDSF_2454	-	bacteriophage protein
2403	 51.94	0	2792987..2793604	-	205	145599726	-	YPDSF_2455	-	ATP-binding protein
2404	 39.86	-1	2793650..2793940	-	96	145599727	-	YPDSF_2456	-	bacteriophage protein
2405	 44.40	0	2794537..2795331	-	264	145599728	-	YPDSF_2457	-	hypothetical protein
2406	 48.34	0	2795307..2796119	-	270	145599729	-	YPDSF_2458	-	transcriptional regulatory protein
2407	 52.19	0	2796122..2796853	-	243	145599730	-	YPDSF_2459	-	putative aldolase
2408	 51.26	0	2796850..2798154	-	434	145599731	-	YPDSF_2460	-	hypothetical protein
2409	 47.08	0	2798365..2798844	-	159	145599732	-	YPDSF_2461	-	phage antitermination protein Q
2410	 47.72	0	2799118..2799840	+	240	145599733	-	YPDSF_2462	-	prophage repressor protein
2411	 35.96	-2	2799890..2800003	-	37	145599734	-	YPDSF_2463	-	hypothetical protein
2412	 44.03	0	2800046..2800288	+	80	145599735	-	YPDSF_2464	-	stress response protein
2413	 40.38	-1	2800460..2801395	+	311	145599736	-	YPDSF_2465	-	outer membrane protease
2414	 50.45	0	2801877..2803664	+	595	145599737	-	YPDSF_2466	-	methyl-accepting chemotaxis protein
2415	 49.39	0	2803738..2804727	-	329	145599738	-	YPDSF_2467	-	hypothetical protein
2416	 47.15	0	2805143..2806669	+	508	145599739	-	YPDSF_2468	-	putative transport protein
2417	 49.79	0	2806944..2808110	+	388	145599740	-	YPDSF_2469	-	beta-lactamase/D-alanine carboxypeptidase
2418	 44.35	0	2808850..2809965	-	371	145599741	-	YPDSF_2470	-	outer membrane porin protein C
2419	 43.01	-1	2812245..2814197	+	650	145599742	-	YPDSF_2473	-	hypothetical protein
2420	 39.09	-1	2814365..2814937	+	190	145599743	-	YPDSF_2474	-	two-component sensor protein like yojN
2421	 39.60	-1	2814940..2815593	+	217	145599744	-	YPDSF_2475	-	transcriptional regulator RcsB
2422	 43.87	0	2815661..2818441	-	926	145599745	-	YPDSF_2476	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2423	 49.70	0	2818722..2821397	-	891	145599746	-	YPDSF_2477	-	DNA gyrase subunit A
2424	 49.93	0	2821659..2822387	+	242	145599747	-	YPDSF_2478	-	3-demethylubiquinone-9 3-methyltransferase
2425	 48.58	0	2822881..2825169	+	762	145599748	-	YPDSF_2479	-	ribonucleotide-diphosphate reductase subunit alpha
2426	 45.80	0	2825332..2826462	+	376	145599749	nrdB	YPDSF_2480	-	ribonucleotide-diphosphate reductase subunit beta
2427	 49.22	0	2826466..2826723	+	85	145599750	-	YPDSF_2481	-	2Fe-2S ferredoxin YfaE
2428	 47.06	0	2826758..2827267	+	169	145599751	-	YPDSF_2482	-	ecotin precursor
2429	 53.94	+1	2827325..2828518	-	397	145599752	-	YPDSF_2483	-	competence damage-inducible protein A
2430	 49.55	0	2829137..2830345	+	402	145599753	-	YPDSF_2484	-	tyrosine-specific transport protein
2431	 53.04	+1	2830602..2831144	-	180	145599754	-	YPDSF_2485	-	hypothetical protein
2432	 49.44	0	2831505..2832944	+	479	145599755	-	YPDSF_2486	-	catalase
2433	 49.24	0	2833012..2835192	-	726	145599756	dinG	YPDSF_2487	-	ATP-dependent DNA helicase DinG
2434	 41.67	-1	2835462..2836577	+	371	145599757	-	YPDSF_2488	-	outer membrane protein C2
2435	 44.81	0	2836614..2836796	-	60	145599758	-	YPDSF_2489	-	hypothetical protein
2436	 49.94	0	2836989..2837879	+	296	145599759	-	YPDSF_2490	-	hypothetical protein
2437	 50.23	0	2837989..2838207	+	72	145599760	-	YPDSF_2491	-	hypothetical protein
2438	 49.07	0	2838325..2839347	-	340	145599761	-	YPDSF_2492	-	amino acid decarboxylase
2439	 49.55	0	2839432..2840640	-	402	145599762	-	YPDSF_2493	-	transposase for the IS285 insertion element
2440	 44.81	0	2840674..2841954	-	426	145599763	-	YPDSF_2494	-	amino acid decarboxylase
2441	 47.12	0	2842024..2843358	-	444	145599764	-	YPDSF_2495	-	arginine:agmatin antiporter
2442	 25.44	-2	2843633..2843860	+	75	145599765	-	YPDSF_2496	-	hypothetical protein
2443	 50.30	0	2843914..2844750	-	278	145599766	-	YPDSF_2497	-	ABC transport integral membrane subunit
2444	 48.03	0	2844747..2845685	-	312	145599767	-	YPDSF_2498	-	ABC transport ATP-binding subunit
2445	 48.48	0	2845682..2846836	-	384	145599768	-	YPDSF_2499	-	ABC transport integral membrane subunit
2446	 48.34	0	2847097..2848029	-	310	145599769	-	YPDSF_2500	-	hypothetical protein
2447	 51.11	0	2848765..2849619	+	284	145599770	-	YPDSF_2501	-	sulfurtransferase
2448	 47.95	0	2849837..2851252	-	471	145599771	-	YPDSF_2502	-	pyridoxal-dependent decarboxylase
2449	 46.97	0	2851276..2852133	-	285	145599772	-	YPDSF_2503	-	hypothetical protein
2450	 50.21	0	2852248..2852946	-	232	145599773	-	YPDSF_2504	-	ABC transport ATP-binding subunit
2451	 48.51	0	2853040..2853876	-	278	145599774	-	YPDSF_2505	-	ABC transport ATP-binding subunit
2452	 50.23	0	2853873..2854949	-	358	145599775	-	YPDSF_2506	-	branched chain amino acid ABC transporter permease
2453	 50.00	0	2854949..2856550	-	533	145599776	-	YPDSF_2507	-	branched chain amino acid ABC transporter permease
2454	 49.96	0	2856674..2857942	-	422	145599777	-	YPDSF_2508	-	substrate-binding periplasmic transport protein
2455	 42.41	-1	2858370..2858843	-	157	145599778	-	YPDSF_2509	-	hypothetical protein
2456	 41.84	-1	2859089..2859970	-	293	145599779	-	YPDSF_2510	-	ABC transport membrane permease
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.