IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2237	 49.65	0	2598285..2600141	-	618	145599560	-	YPDSF_2288	-	hypothetical protein
2238	 45.75	0	2600425..2600883	-	152	145599561	-	YPDSF_2289	-	transposase for the IS1541 insertion element
2239	 51.82	0	2601099..2605556	-	1485	145599562	mukB	YPDSF_2290	-	cell division protein MukB
2240	 47.05	0	2605553..2606281	-	242	145599563	-	YPDSF_2291	-	condesin subunit E
2241	 49.66	0	2606262..2607584	-	440	145599564	-	YPDSF_2292	-	condesin subunit F
2242	 47.84	0	2607581..2608366	-	261	145599565	-	YPDSF_2293	-	putative metallothionein SmtA
2243	 49.95	0	2609157..2610089	-	310	145599566	-	YPDSF_2294	-	hypothetical protein
2244	 51.26	0	2610413..2611165	-	250	145599567	-	YPDSF_2295	-	3-deoxy-manno-octulosonate cytidylyltransferase
2245	 46.99	0	2611162..2611344	-	60	145599568	-	YPDSF_2296	-	hypothetical protein
2246	 45.71	0	2611892..2612101	-	69	145599569	-	YPDSF_2297	-	cold shock-like protein
2247	 49.22	0	2612820..2614229	+	469	145599570	-	YPDSF_2298	-	hypothetical protein
2248	 52.99	+1	2614237..2615223	-	328	145599571	lpxK	YPDSF_2299	-	tetraacyldisaccharide 4'-kinase
2249	 46.60	0	2615220..2616968	-	582	145599572	-	YPDSF_2300	-	lipid transporter ATP-binding/permease protein
2250	 47.21	0	2617004..2619295	-	763	145599573	-	YPDSF_2301	-	hypothetical protein
2251	 46.67	0	2619842..2620126	-	94	145599574	ihfB	YPDSF_2302	-	integration host factor subunit beta
2252	 47.97	0	2620187..2621860	-	557	145599575	rpsA	YPDSF_2303	-	30S ribosomal protein S1
2253	 50.79	0	2622034..2622726	-	230	145599576	cmk	YPDSF_2304	-	cytidylate kinase
2254	 51.36	0	2623038..2624324	-	428	145599577	-	YPDSF_2305	-	3-phosphoshikimate 1-carboxyvinyltransferase
2255	 47.33	0	2624487..2625572	-	361	145599578	-	YPDSF_2306	-	phosphoserine aminotransferase
2256	 38.85	-1	2625939..2627786	-	615	145599579	-	YPDSF_2307	-	hypothetical protein
2257	 40.55	-1	2627807..2628901	-	364	145599580	-	YPDSF_2308	-	hypothetical protein
2258	 46.72	0	2629170..2630207	-	345	145599581	ansB	YPDSF_2309	-	L-asparaginase II
2259	 49.52	0	2630356..2632122	+	588	145599582	-	YPDSF_2310	-	hypothetical protein
2260	 45.22	0	2632820..2633677	+	285	145599583	-	YPDSF_2311	-	formate transporter
2261	 48.05	0	2633733..2636015	+	760	145599584	-	YPDSF_2312	-	formate acetyltransferase 1
2262	 35.56	-2	2636133..2636807	-	224	145599585	-	YPDSF_2313	-	hypothetical protein
2263	 46.67	0	2637794..2638528	+	244	145599586	pflA	YPDSF_2314	-	pyruvate formate lyase-activating enzyme 1
2264	 49.61	0	2638682..2639830	-	382	145599587	-	YPDSF_2315	-	MFS family transporter
2265	 49.11	0	2640061..2641353	-	430	145599588	-	YPDSF_2316	-	seryl-tRNA synthetase
2266	 52.68	0	2641595..2642938	-	447	145599589	-	YPDSF_2317	-	recombination factor protein RarA
2267	 45.16	0	2642949..2643557	-	202	145599590	lolA	YPDSF_2318	-	outer-membrane lipoprotein carrier protein
2268	 50.87	0	2643750..2647649	-	1299	145599591	-	YPDSF_2319	-	cell division protein
2269	 44.24	0	2647772..2648266	-	164	145599592	-	YPDSF_2320	-	leucine-responsive transcriptional regulator
2270	 51.51	0	2649033..2649995	+	320	145599593	-	YPDSF_2321	-	thioredoxin reductase
2271	 50.65	0	2650454..2652220	+	588	145599594	-	YPDSF_2322	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
2272	 51.65	0	2652223..2653947	+	574	145599595	-	YPDSF_2323	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
2273	 49.51	0	2654166..2654876	+	236	145599596	aat	YPDSF_2324	-	leucyl/phenylalanyl-tRNA--protein transferase
2274	 49.77	0	2655042..2655260	+	72	145599597	infA	YPDSF_2325	-	translation initiation factor IF-1
2275	 45.75	0	2655632..2656090	-	152	145599598	-	YPDSF_2326	-	transposase for the IS1541 insertion element
2276	 49.41	0	2656383..2658659	-	758	145599599	clpA	YPDSF_2327	-	ATP-dependent Clp protease ATP-binding subunit
2277	 42.06	-1	2658685..2659005	-	106	145599600	clpS	YPDSF_2328	-	ATP-dependent Clp protease adaptor protein ClpS
2278	 41.55	-1	2658974..2659180	-	68	145599601	-	YPDSF_2329	-	hypothetical protein
2279	 46.97	0	2659366..2659629	+	87	145599602	-	YPDSF_2330	-	cold shock-like protein
2280	 51.54	0	2659910..2661859	-	649	145599603	-	YPDSF_2331	-	macrolide transporter ATP-binding /permease protein
2281	 49.06	0	2661859..2662971	-	370	145599604	-	YPDSF_2332	-	macrolide transporter subunit MacA
2282	 34.46	-2	2663004..2663180	+	58	145599605	-	YPDSF_2333	-	hypothetical protein
2283	 42.62	-1	2663208..2664155	+	315	145599606	-	YPDSF_2334	-	virulence factor
2284	 50.54	0	2664292..2665959	-	555	145599607	-	YPDSF_2335	-	hypothetical protein
2285	 48.49	0	2666312..2667208	+	298	145599608	-	YPDSF_2336	-	hypothetical protein
2286	 50.76	0	2667411..2669063	+	550	145599609	-	YPDSF_2337	-	hydroxylamine reductase
2287	 53.18	+1	2669177..2670199	+	340	145599610	-	YPDSF_2338	-	HCP oxidoreductase, NADH-dependent
2288	 52.26	0	2670343..2672064	+	573	145599611	-	YPDSF_2339	-	pyruvate dehydrogenase
2289	 51.89	0	2672377..2673432	+	351	145599612	-	YPDSF_2340	-	L-threonine aldolase
2290	 52.52	0	2673429..2674919	+	496	145599613	-	YPDSF_2341	-	membrane protein
2291	 51.59	0	2675019..2676026	+	335	145599614	-	YPDSF_2342	-	hypothetical protein
2292	 49.65	0	2676123..2676698	+	191	145599615	-	YPDSF_2343	-	putative lipoprotein
2293	 50.45	0	2676725..2676835	-	36	145599616	-	YPDSF_2344	-	hypothetical protein
2294	 45.63	0	2676868..2677428	+	186	145599617	-	YPDSF_2345	-	chorismate mutase
2295	 51.58	0	2677723..2678451	+	242	145599618	artP	YPDSF_2346	-	arginine transporter ATP-binding subunit
2296	 45.90	0	2678472..2679203	+	243	145599619	-	YPDSF_2347	-	arginine-binding periplasmic protein 1 precursor
2297	 50.91	0	2679215..2679931	+	238	145599620	-	YPDSF_2348	-	arginine transporter permease subunit ArtQ
2298	 51.42	0	2679931..2680599	+	222	145599621	artM	YPDSF_2349	-	arginine transporter permease subunit ArtM
2299	 52.00	0	2680615..2680764	+	49	145599622	-	YPDSF_2350	-	hypothetical protein
2300	 48.70	0	2680789..2681634	-	281	145599623	-	YPDSF_2351	-	membrane protein
2301	 52.46	0	2681631..2683031	-	466	145599624	-	YPDSF_2352	-	hypothetical protein
2302	 49.87	0	2682994..2683791	-	265	145599625	-	YPDSF_2353	-	hypothetical protein
2303	 52.16	0	2683779..2684564	-	261	145599626	-	YPDSF_2354	-	transport ATP-binding protein
2304	 51.61	0	2684561..2685463	-	300	145599627	-	YPDSF_2355	-	FecCD transport family protein
2305	 50.18	0	2685617..2686708	-	363	145599628	-	YPDSF_2356	-	periplasmic binding protein
2306	 39.91	-1	2687120..2688046	-	308	145599629	-	YPDSF_2357	-	SPFH domain-containing protein
2307	 40.26	-1	2688387..2688617	-	76	145599630	-	YPDSF_2358	-	hypothetical protein
2308	 44.81	0	2688865..2689596	+	243	145599631	-	YPDSF_2359	-	hypothetical protein
2309	 52.17	0	2689723..2690853	-	376	145599632	rumB	YPDSF_2360	-	23S rRNA methyluridine methyltransferase
2310	 47.10	0	2690937..2691401	-	154	145599633	-	YPDSF_2361	-	hypothetical protein
2311	 53.78	+1	2691526..2692371	-	281	145599634	-	YPDSF_2362	-	putrescine ABC transporter membrane protein
2312	 49.90	0	2692368..2693333	-	321	145599635	-	YPDSF_2363	-	putrescine ABC transporter membrane protein
2313	 50.35	0	2693358..2694491	-	377	145599636	potG	YPDSF_2364	-	putrescine transporter ATP-binding subunit
2314	 47.50	0	2694497..2694616	+	39	145599637	-	YPDSF_2365	-	hypothetical protein
2315	 48.47	0	2694662..2695771	-	369	145599638	-	YPDSF_2366	-	putrescine ABC transporter periplasmic substrate-binding protein
2316	 45.36	0	2696230..2696778	-	182	145599639	-	YPDSF_2367	-	hypothetical protein
2317	 47.94	0	2696920..2697234	-	104	145599640	-	YPDSF_2368	-	hypothetical protein
2318	 43.94	0	2697697..2697960	+	87	145599641	grxA	YPDSF_2369	-	glutaredoxin 1
2319	 49.32	0	2698370..2700058	+	562	145599642	-	YPDSF_2370	-	hypothetical protein
2320	 49.03	0	2700436..2701206	+	256	145599643	-	YPDSF_2371	-	hypothetical protein
2321	 48.09	0	2701236..2701811	+	191	145599644	-	YPDSF_2372	-	undecaprenyl pyrophosphate phosphatase
2322	 48.07	0	2702069..2702740	+	223	145599645	-	YPDSF_2373	-	deoxyribose-phosphate aldolase
2323	 44.84	0	2702970..2703734	+	254	145599646	-	YPDSF_2374	-	DNA-binding transcriptional repressor DeoR
2324	 47.39	0	2704834..2706135	+	433	145599647	-	YPDSF_2375	-	serine transporter
2325	 48.01	0	2706576..2707781	-	401	145599648	-	YPDSF_2376	-	D-alanyl-D-alanine carboxypeptidase
2326	 50.89	0	2708116..2708787	-	223	145599649	-	YPDSF_2377	-	ABC transport integral membrane subunit
2327	 53.60	+1	2708784..2709770	-	328	145599650	-	YPDSF_2378	-	ABC transport ATP-binding subunit
2328	 47.64	0	2709767..2710591	-	274	145599651	-	YPDSF_2379	-	hypothetical protein
2329	 53.56	+1	2710819..2711886	-	355	145599652	-	YPDSF_2380	-	iron/ascorbate oxidoreductase family protein
2330	 48.54	0	2712373..2713023	+	216	145599653	-	YPDSF_2381	-	hydrolase
2331	 48.95	0	2713177..2713797	+	206	145599654	-	YPDSF_2382	-	glutathione S-transferase-family protein
2332	 46.10	0	2714067..2716064	-	665	145599655	-	YPDSF_2383	-	putative outer membrane receptor
2333	 50.44	0	2716324..2717112	-	262	145599656	-	YPDSF_2384	-	siderophore ABC transporter, ATP-binding subunit
2334	 51.52	0	2717109..2718191	-	360	145599657	-	YPDSF_2385	-	FecCD-family membrane transport protein
2335	 47.47	0	2718366..2719511	-	381	145599658	-	YPDSF_2386	-	periplasmic substrate-binding transport protein
2336	 45.75	0	2719851..2720309	-	152	145599659	-	YPDSF_2387	-	transposase for the IS1541 insertion element
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.