IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2183	 53.50	+1	2533436..2534734	-	432	145599506	-	YPDSF_2234	-	aminopeptidase B
2184	 47.26	0	2534874..2535074	-	66	145599507	-	YPDSF_2235	-	hypothetical protein
2185	 51.49	0	2535104..2535439	-	111	145599508	-	YPDSF_2236	-	ferredoxin
2186	 55.03	+1	2535442..2537340	-	632	145599509	hscA	YPDSF_2237	-	chaperone protein HscA
2187	 50.67	0	2537583..2538107	-	174	145599510	hscB	YPDSF_2238	-	co-chaperone HscB
2188	 46.30	0	2538218..2538541	-	107	145599511	iscA	YPDSF_2239	-	iron-sulfur cluster assembly protein
2189	 46.51	0	2538811..2539197	-	128	145599512	-	YPDSF_2240	-	scaffold protein
2190	 48.86	0	2539228..2540457	-	409	145599513	-	YPDSF_2241	-	aminotransferase
2191	 52.32	0	2540511..2541005	-	164	145599514	-	YPDSF_2242	-	DNA-binding transcriptional regulator IscR
2192	 50.26	0	2541161..2541934	-	257	145599515	-	YPDSF_2243	-	SpoU rRNA methylase family
2193	 49.50	0	2542053..2542856	+	267	145599516	-	YPDSF_2244	-	inositol monophosphatase
2194	 50.93	0	2542955..2543977	-	340	145599517	-	YPDSF_2245	-	hypothetical protein
2195	 44.00	0	2543968..2544642	-	224	145599518	-	YPDSF_2246	-	hypothetical protein
2196	 46.92	0	2544784..2546145	+	453	145599519	-	YPDSF_2247	-	stationary phase inducible protein CsiE
2197	 50.26	0	2546142..2547299	-	385	145599520	-	YPDSF_2248	-	putative 3-phenylpropionic acid transporter
2198	 40.58	-1	2547669..2548220	-	183	145599521	-	YPDSF_2249	-	attachment invasion locus protein
2199	 50.00	0	2548330..2548551	-	73	145599522	-	YPDSF_2250	-	membrane protein
2200	 48.72	0	2548664..2549917	-	417	145599523	glyA	YPDSF_2251	-	serine hydroxymethyltransferase
2201	 46.85	0	2550458..2551648	+	396	145599524	-	YPDSF_2252	-	nitric oxide dioxygenase
2202	 52.79	0	2551935..2552957	+	340	145599525	-	YPDSF_2253	-	transposase for insertion sequence IS100
2203	 50.38	0	2552957..2553736	+	259	145599526	-	YPDSF_2254	-	transposase/IS protein
2204	 45.56	0	2554072..2554971	+	299	145599527	-	YPDSF_2255	-	hypothetical protein
2205	 45.13	0	2555140..2555478	-	112	145599528	-	YPDSF_2256	-	nitrogen regulatory protein P-II 1
2206	 49.72	0	2555493..2557115	-	540	145599529	nadE	YPDSF_2257	-	NAD synthetase
2207	 50.00	0	2557275..2558612	-	445	145599530	-	YPDSF_2258	-	two-component system response regulator
2208	 50.78	0	2558575..2559657	-	360	145599531	-	YPDSF_2259	-	hypothetical protein
2209	 48.57	0	2559661..2561097	-	478	145599532	-	YPDSF_2260	-	two-component system sensor kinase
2210	 45.75	0	2561318..2561776	-	152	145599533	-	YPDSF_2261	-	transposase for the IS1541 insertion element
2211	 40.46	-1	2563003..2563563	+	186	145599534	-	YPDSF_2262	-	hypothetical protein
2212	 36.96	-2	2563886..2564464	+	192	145599535	-	YPDSF_2263	-	hypothetical protein
2213	 53.39	+1	2564876..2568739	-	1287	145599536	-	YPDSF_2264	-	phosphoribosylformylglycinamidine synthase
2214	 49.09	0	2569001..2570542	+	513	145599537	-	YPDSF_2265	-	putative transglycosylase
2215	 53.72	+1	2570651..2571214	-	187	145599538	-	YPDSF_2266	-	tRNA-specific adenosine deaminase
2216	 51.58	0	2571324..2572019	-	231	145599539	-	YPDSF_2267	-	hypothetical protein
2217	 53.49	+1	2572246..2573133	-	295	145599540	murQ	YPDSF_2268	-	N-acetylmuramic acid-6-phosphate etherase
2218	 49.29	0	2573341..2574180	+	279	145599541	-	YPDSF_2269	-	putative DNA-binding transcriptional regulator
2219	 45.21	0	2574342..2574602	+	86	145599542	-	YPDSF_2270	-	(4Fe-4S) ferredoxin
2220	 45.97	0	2574758..2575216	-	152	145599543	-	YPDSF_2271	-	transposase for the IS1541 insertion element
2221	 51.19	0	2575414..2575581	-	55	145599544	-	YPDSF_2272	-	ribosome modulation factor
2222	 49.57	0	2575851..2576429	-	192	145599545	-	YPDSF_2273	-	lipoprotein protein
2223	 47.26	0	2576426..2578105	-	559	145599546	-	YPDSF_2274	-	paraquat-inducible protein B
2224	 47.86	0	2578065..2579351	-	428	145599547	-	YPDSF_2275	-	paraquat-inducible protein A
2225	 48.96	0	2579480..2581393	-	637	145599548	-	YPDSF_2276	-	ABC transporter ATPase component
2226	 51.06	0	2581399..2583519	-	706	145599549	-	YPDSF_2277	-	23S rRNA m(2)G2445 methyltransferase
2227	 48.83	0	2583622..2584731	+	369	145599550	-	YPDSF_2278	-	iron-sulfur binding protein
2228	 42.03	-1	2584757..2585308	-	183	145599551	-	YPDSF_2279	-	hypothetical protein
2229	 43.32	0	2585491..2586501	-	336	145599552	-	YPDSF_2280	-	dihydroorotate dehydrogenase 2
2230	 47.36	0	2587119..2589734	-	871	145599553	-	YPDSF_2281	-	aminopeptidase N
2231	 47.34	0	2590435..2591655	+	406	145599554	-	YPDSF_2282	-	nicotinate phosphoribosyltransferase
2232	 49.89	0	2592154..2593554	+	466	145599555	asnC	YPDSF_2283	-	asparaginyl-tRNA synthetase
2233	 45.98	0	2593852..2594934	+	360	145599556	-	YPDSF_2284	-	outer membrane porin C protein
2234	 49.50	0	2595176..2596381	+	401	145599557	-	YPDSF_2285	-	aromatic amino acid aminotransferase
2235	 50.62	0	2596805..2597452	-	215	145599558	-	YPDSF_2286	-	metallo-beta-lactamase superfamily protein
2236	 46.63	0	2597513..2598061	-	182	145599559	-	YPDSF_2287	-	hypothetical protein
2237	 49.65	0	2598285..2600141	-	618	145599560	-	YPDSF_2288	-	hypothetical protein
2238	 45.75	0	2600425..2600883	-	152	145599561	-	YPDSF_2289	-	transposase for the IS1541 insertion element
2239	 51.82	0	2601099..2605556	-	1485	145599562	mukB	YPDSF_2290	-	cell division protein MukB
2240	 47.05	0	2605553..2606281	-	242	145599563	-	YPDSF_2291	-	condesin subunit E
2241	 49.66	0	2606262..2607584	-	440	145599564	-	YPDSF_2292	-	condesin subunit F
2242	 47.84	0	2607581..2608366	-	261	145599565	-	YPDSF_2293	-	putative metallothionein SmtA
2243	 49.95	0	2609157..2610089	-	310	145599566	-	YPDSF_2294	-	hypothetical protein
2244	 51.26	0	2610413..2611165	-	250	145599567	-	YPDSF_2295	-	3-deoxy-manno-octulosonate cytidylyltransferase
2245	 46.99	0	2611162..2611344	-	60	145599568	-	YPDSF_2296	-	hypothetical protein
2246	 45.71	0	2611892..2612101	-	69	145599569	-	YPDSF_2297	-	cold shock-like protein
2247	 49.22	0	2612820..2614229	+	469	145599570	-	YPDSF_2298	-	hypothetical protein
2248	 52.99	+1	2614237..2615223	-	328	145599571	lpxK	YPDSF_2299	-	tetraacyldisaccharide 4'-kinase
2249	 46.60	0	2615220..2616968	-	582	145599572	-	YPDSF_2300	-	lipid transporter ATP-binding/permease protein
2250	 47.21	0	2617004..2619295	-	763	145599573	-	YPDSF_2301	-	hypothetical protein
2251	 46.67	0	2619842..2620126	-	94	145599574	ihfB	YPDSF_2302	-	integration host factor subunit beta
2252	 47.97	0	2620187..2621860	-	557	145599575	rpsA	YPDSF_2303	-	30S ribosomal protein S1
2253	 50.79	0	2622034..2622726	-	230	145599576	cmk	YPDSF_2304	-	cytidylate kinase
2254	 51.36	0	2623038..2624324	-	428	145599577	-	YPDSF_2305	-	3-phosphoshikimate 1-carboxyvinyltransferase
2255	 47.33	0	2624487..2625572	-	361	145599578	-	YPDSF_2306	-	phosphoserine aminotransferase
2256	 38.85	-1	2625939..2627786	-	615	145599579	-	YPDSF_2307	-	hypothetical protein
2257	 40.55	-1	2627807..2628901	-	364	145599580	-	YPDSF_2308	-	hypothetical protein
2258	 46.72	0	2629170..2630207	-	345	145599581	ansB	YPDSF_2309	-	L-asparaginase II
2259	 49.52	0	2630356..2632122	+	588	145599582	-	YPDSF_2310	-	hypothetical protein
2260	 45.22	0	2632820..2633677	+	285	145599583	-	YPDSF_2311	-	formate transporter
2261	 48.05	0	2633733..2636015	+	760	145599584	-	YPDSF_2312	-	formate acetyltransferase 1
2262	 35.56	-2	2636133..2636807	-	224	145599585	-	YPDSF_2313	-	hypothetical protein
2263	 46.67	0	2637794..2638528	+	244	145599586	pflA	YPDSF_2314	-	pyruvate formate lyase-activating enzyme 1
2264	 49.61	0	2638682..2639830	-	382	145599587	-	YPDSF_2315	-	MFS family transporter
2265	 49.11	0	2640061..2641353	-	430	145599588	-	YPDSF_2316	-	seryl-tRNA synthetase
2266	 52.68	0	2641595..2642938	-	447	145599589	-	YPDSF_2317	-	recombination factor protein RarA
2267	 45.16	0	2642949..2643557	-	202	145599590	lolA	YPDSF_2318	-	outer-membrane lipoprotein carrier protein
2268	 50.87	0	2643750..2647649	-	1299	145599591	-	YPDSF_2319	-	cell division protein
2269	 44.24	0	2647772..2648266	-	164	145599592	-	YPDSF_2320	-	leucine-responsive transcriptional regulator
2270	 51.51	0	2649033..2649995	+	320	145599593	-	YPDSF_2321	-	thioredoxin reductase
2271	 50.65	0	2650454..2652220	+	588	145599594	-	YPDSF_2322	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
2272	 51.65	0	2652223..2653947	+	574	145599595	-	YPDSF_2323	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
2273	 49.51	0	2654166..2654876	+	236	145599596	aat	YPDSF_2324	-	leucyl/phenylalanyl-tRNA--protein transferase
2274	 49.77	0	2655042..2655260	+	72	145599597	infA	YPDSF_2325	-	translation initiation factor IF-1
2275	 45.75	0	2655632..2656090	-	152	145599598	-	YPDSF_2326	-	transposase for the IS1541 insertion element
2276	 49.41	0	2656383..2658659	-	758	145599599	clpA	YPDSF_2327	-	ATP-dependent Clp protease ATP-binding subunit
2277	 42.06	-1	2658685..2659005	-	106	145599600	clpS	YPDSF_2328	-	ATP-dependent Clp protease adaptor protein ClpS
2278	 41.55	-1	2658974..2659180	-	68	145599601	-	YPDSF_2329	-	hypothetical protein
2279	 46.97	0	2659366..2659629	+	87	145599602	-	YPDSF_2330	-	cold shock-like protein
2280	 51.54	0	2659910..2661859	-	649	145599603	-	YPDSF_2331	-	macrolide transporter ATP-binding /permease protein
2281	 49.06	0	2661859..2662971	-	370	145599604	-	YPDSF_2332	-	macrolide transporter subunit MacA
2282	 34.46	-2	2663004..2663180	+	58	145599605	-	YPDSF_2333	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.