IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2125	 48.18	0	2451970..2452326	+	118	145599448	-	YPDSF_2174	-	arsenate reductase
2126	 48.31	0	2452538..2453245	-	235	145599449	-	YPDSF_2175	-	DNA replication initiation factor
2127	 45.97	0	2453433..2453891	-	152	145599450	-	YPDSF_2176	-	transposase for the IS1541 insertion element
2128	 48.01	0	2454067..2454693	-	208	145599451	upp	YPDSF_2177	-	uracil phosphoribosyltransferase
2129	 51.63	0	2455090..2456133	+	347	145599452	-	YPDSF_2178	-	phosphoribosylaminoimidazole synthetase
2130	 50.55	0	2456248..2456886	+	212	145599453	purN	YPDSF_2179	-	phosphoribosylglycinamide formyltransferase
2131	 39.01	-1	2457115..2457660	+	181	145599454	-	YPDSF_2180	-	spermidine acetyltransferase
2132	 45.32	0	2457754..2458587	-	277	145599455	-	YPDSF_2181	-	hypothetical protein
2133	 43.83	0	2458563..2458943	-	126	145599456	-	YPDSF_2182	-	hypothetical protein
2134	 49.94	0	2459157..2459969	-	270	145599457	-	YPDSF_2183	-	phosphate transport ATP-binding protein
2135	 51.12	0	2459997..2461694	-	565	145599458	-	YPDSF_2184	-	phosphate transport system permease
2136	 54.21	+1	2461694..2463925	-	743	145599459	-	YPDSF_2185	-	phosphate transport system permease
2137	 44.28	0	2464196..2466259	+	687	145599460	-	YPDSF_2186	-	polyphosphate kinase
2138	 51.03	0	2466270..2467829	+	519	145599461	-	YPDSF_2187	-	exopolyphosphatase
2139	 48.83	0	2467941..2468153	+	70	145599462	-	YPDSF_2188	-	hypothetical protein
2140	 50.95	0	2468205..2469680	+	491	145599463	-	YPDSF_2189	-	divalent cation transport protein
2141	 54.40	+1	2469820..2471172	+	450	145599464	-	YPDSF_2190	-	putative chaperone
2142	 53.71	+1	2471444..2472292	-	282	145599465	-	YPDSF_2191	-	ABC transporter permease
2143	 52.29	0	2472354..2473619	-	421	145599466	-	YPDSF_2192	-	ABC transporter permease
2144	 48.20	0	2473666..2474694	-	342	145599467	-	YPDSF_2193	-	transport system periplasmic protein
2145	 53.35	+1	2474747..2476060	-	437	145599468	-	YPDSF_2194	-	4-aminobutyrate aminotransferase
2146	 54.52	+1	2476218..2477723	+	501	145599469	-	YPDSF_2195	-	GntR family regulatory protein
2147	 48.80	0	2478106..2479191	+	361	145599470	-	YPDSF_2196	-	ABC transporter ATP-binding protein
2148	 54.23	+1	2479555..2480889	+	444	145599471	-	YPDSF_2197	-	multidrug efflux system subunit MdtA
2149	 53.72	+1	2480889..2484047	+	1052	145599472	-	YPDSF_2198	-	multidrug efflux system subunit MdtB
2150	 53.79	+1	2487135..2488532	+	465	145599473	-	YPDSF_2201	-	multidrug efflux system protein MdtE
2151	 51.37	0	2488563..2489948	+	461	145599474	-	YPDSF_2202	-	signal transduction histidine-protein kinase BaeS
2152	 53.06	+1	2489958..2490677	+	239	145599475	-	YPDSF_2203	-	DNA-binding transcriptional regulator BaeR
2153	 43.36	0	2490814..2491152	+	112	145599476	-	YPDSF_2204	-	hypothetical protein
2154	 49.61	0	2491427..2492821	+	464	145599477	-	YPDSF_2205	-	protease
2155	 52.08	0	2493457..2494347	+	296	145599478	-	YPDSF_2206	-	lipid kinase
2156	 51.37	0	2494634..2495143	-	169	145599479	-	YPDSF_2207	-	hypothetical protein
2157	 48.76	0	2495374..2496261	+	295	145599480	-	YPDSF_2208	-	hypothetical protein
2158	 55.68	+1	2496323..2497123	-	266	145599481	-	YPDSF_2209	-	phosphomethylpyrimidine kinase
2159	 32.69	-2	2497645..2498112	+	155	145599482	-	YPDSF_2210	-	membrane protein
2160	 39.58	-1	2498171..2498458	+	95	145599483	-	YPDSF_2211	-	hypothetical protein
2161	 49.63	0	2498480..2499688	-	402	145599484	-	YPDSF_2212	-	transposase for the IS285 insertion element
2162	 40.88	-1	2499713..2500414	+	233	145599485	-	YPDSF_2213	-	membrane protein
2163	 45.97	0	2502847..2503305	-	152	145599486	-	YPDSF_2214	-	transposase for the IS1541 insertion element
2164	 49.43	0	2503680..2505257	-	525	145599487	guaA	YPDSF_2215	-	bifunctional GMP synthase/glutamine amidotransferase protein
2165	 51.64	0	2505437..2506900	-	487	145599488	-	YPDSF_2216	-	inositol-5-monophosphate dehydrogenase
2166	 52.25	0	2507070..2508449	+	459	145599489	xseA	YPDSF_2217	-	exodeoxyribonuclease VII large subunit
2167	 48.89	0	2508582..2508806	-	74	145599490	-	YPDSF_2218	-	hypothetical protein
2168	 50.47	0	2508855..2509811	-	318	145599491	-	YPDSF_2219	-	hypothetical protein
2169	 47.98	0	2510158..2511645	-	495	145599492	engA	YPDSF_2220	-	GTP-binding protein EngA
2170	 50.00	0	2511793..2512974	-	393	145599493	-	YPDSF_2221	-	outer membrane protein assembly complex subunit YfgL
2171	 47.01	0	2512986..2513621	-	211	145599494	-	YPDSF_2222	-	hypothetical protein
2172	 50.75	0	2513635..2514909	-	424	145599495	hisS	YPDSF_2223	-	histidyl-tRNA synthetase
2173	 45.66	0	2515118..2516245	-	375	145599496	ispG	YPDSF_2224	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2174	 50.39	0	2516307..2517344	-	345	145599497	-	YPDSF_2225	-	hypothetical protein
2175	 49.20	0	2517334..2518083	-	249	145599498	-	YPDSF_2226	-	fimbrial biogenesis protein
2176	 48.62	0	2518237..2519433	-	398	145599499	-	YPDSF_2227	-	hypothetical protein
2177	 47.55	0	2519695..2520123	-	142	145599500	ndk	YPDSF_2228	-	nucleoside diphosphate kinase
2178	 38.99	-1	2520450..2522870	-	806	145599501	-	YPDSF_2229	-	hypothetical protein
2179	 49.34	0	2523586..2528064	+	1492	145599502	-	YPDSF_2230	-	autotransporter protein
2180	 49.10	0	2528622..2531780	+	1052	145599503	-	YPDSF_2231	-	hypothetical protein
2181	 51.71	0	2531746..2532066	+	106	145599504	-	YPDSF_2232	-	hypothetical protein
2182	 50.84	0	2532404..2533357	-	317	145599505	-	YPDSF_2233	-	enhanced serine sensitivity protein SseB
2183	 53.50	+1	2533436..2534734	-	432	145599506	-	YPDSF_2234	-	aminopeptidase B
2184	 47.26	0	2534874..2535074	-	66	145599507	-	YPDSF_2235	-	hypothetical protein
2185	 51.49	0	2535104..2535439	-	111	145599508	-	YPDSF_2236	-	ferredoxin
2186	 55.03	+1	2535442..2537340	-	632	145599509	hscA	YPDSF_2237	-	chaperone protein HscA
2187	 50.67	0	2537583..2538107	-	174	145599510	hscB	YPDSF_2238	-	co-chaperone HscB
2188	 46.30	0	2538218..2538541	-	107	145599511	iscA	YPDSF_2239	-	iron-sulfur cluster assembly protein
2189	 46.51	0	2538811..2539197	-	128	145599512	-	YPDSF_2240	-	scaffold protein
2190	 48.86	0	2539228..2540457	-	409	145599513	-	YPDSF_2241	-	aminotransferase
2191	 52.32	0	2540511..2541005	-	164	145599514	-	YPDSF_2242	-	DNA-binding transcriptional regulator IscR
2192	 50.26	0	2541161..2541934	-	257	145599515	-	YPDSF_2243	-	SpoU rRNA methylase family
2193	 49.50	0	2542053..2542856	+	267	145599516	-	YPDSF_2244	-	inositol monophosphatase
2194	 50.93	0	2542955..2543977	-	340	145599517	-	YPDSF_2245	-	hypothetical protein
2195	 44.00	0	2543968..2544642	-	224	145599518	-	YPDSF_2246	-	hypothetical protein
2196	 46.92	0	2544784..2546145	+	453	145599519	-	YPDSF_2247	-	stationary phase inducible protein CsiE
2197	 50.26	0	2546142..2547299	-	385	145599520	-	YPDSF_2248	-	putative 3-phenylpropionic acid transporter
2198	 40.58	-1	2547669..2548220	-	183	145599521	-	YPDSF_2249	-	attachment invasion locus protein
2199	 50.00	0	2548330..2548551	-	73	145599522	-	YPDSF_2250	-	membrane protein
2200	 48.72	0	2548664..2549917	-	417	145599523	glyA	YPDSF_2251	-	serine hydroxymethyltransferase
2201	 46.85	0	2550458..2551648	+	396	145599524	-	YPDSF_2252	-	nitric oxide dioxygenase
2202	 52.79	0	2551935..2552957	+	340	145599525	-	YPDSF_2253	-	transposase for insertion sequence IS100
2203	 50.38	0	2552957..2553736	+	259	145599526	-	YPDSF_2254	-	transposase/IS protein
2204	 45.56	0	2554072..2554971	+	299	145599527	-	YPDSF_2255	-	hypothetical protein
2205	 45.13	0	2555140..2555478	-	112	145599528	-	YPDSF_2256	-	nitrogen regulatory protein P-II 1
2206	 49.72	0	2555493..2557115	-	540	145599529	nadE	YPDSF_2257	-	NAD synthetase
2207	 50.00	0	2557275..2558612	-	445	145599530	-	YPDSF_2258	-	two-component system response regulator
2208	 50.78	0	2558575..2559657	-	360	145599531	-	YPDSF_2259	-	hypothetical protein
2209	 48.57	0	2559661..2561097	-	478	145599532	-	YPDSF_2260	-	two-component system sensor kinase
2210	 45.75	0	2561318..2561776	-	152	145599533	-	YPDSF_2261	-	transposase for the IS1541 insertion element
2211	 40.46	-1	2563003..2563563	+	186	145599534	-	YPDSF_2262	-	hypothetical protein
2212	 36.96	-2	2563886..2564464	+	192	145599535	-	YPDSF_2263	-	hypothetical protein
2213	 53.39	+1	2564876..2568739	-	1287	145599536	-	YPDSF_2264	-	phosphoribosylformylglycinamidine synthase
2214	 49.09	0	2569001..2570542	+	513	145599537	-	YPDSF_2265	-	putative transglycosylase
2215	 53.72	+1	2570651..2571214	-	187	145599538	-	YPDSF_2266	-	tRNA-specific adenosine deaminase
2216	 51.58	0	2571324..2572019	-	231	145599539	-	YPDSF_2267	-	hypothetical protein
2217	 53.49	+1	2572246..2573133	-	295	145599540	murQ	YPDSF_2268	-	N-acetylmuramic acid-6-phosphate etherase
2218	 49.29	0	2573341..2574180	+	279	145599541	-	YPDSF_2269	-	putative DNA-binding transcriptional regulator
2219	 45.21	0	2574342..2574602	+	86	145599542	-	YPDSF_2270	-	(4Fe-4S) ferredoxin
2220	 45.97	0	2574758..2575216	-	152	145599543	-	YPDSF_2271	-	transposase for the IS1541 insertion element
2221	 51.19	0	2575414..2575581	-	55	145599544	-	YPDSF_2272	-	ribosome modulation factor
2222	 49.57	0	2575851..2576429	-	192	145599545	-	YPDSF_2273	-	lipoprotein protein
2223	 47.26	0	2576426..2578105	-	559	145599546	-	YPDSF_2274	-	paraquat-inducible protein B
2224	 47.86	0	2578065..2579351	-	428	145599547	-	YPDSF_2275	-	paraquat-inducible protein A
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.