IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2002	 46.26	0	2309268..2310458	-	396	145599325	-	YPDSF_2049	-	outer membrane fimbrial usher porin
2003	 49.63	0	2310483..2311691	+	402	145599326	-	YPDSF_2050	-	transposase for the IS285 insertion element
2004	 45.13	0	2311713..2313263	-	516	145599327	-	YPDSF_2051	-	hypothetical protein
2005	 41.21	-1	2313391..2314152	-	253	145599328	-	YPDSF_2052	-	pili chaperone protein
2006	 44.32	0	2314309..2314854	-	181	145599329	-	YPDSF_2053	-	frimbrial protein
2007	 47.94	0	2315055..2317730	-	891	145599330	-	YPDSF_2054	-	Clp ATPase
2008	 49.71	0	2318513..2320393	+	626	145599331	-	YPDSF_2055	-	hypothetical protein
2009	 54.37	+1	2320393..2321238	+	281	145599332	-	YPDSF_2056	-	hypothetical protein
2010	 49.12	0	2321300..2321413	+	37	145599333	-	YPDSF_2057	-	hypothetical protein
2011	 50.17	0	2321512..2322693	+	393	145599334	-	YPDSF_2058	-	hypothetical protein
2012	 45.35	0	2322700..2323731	+	343	145599335	-	YPDSF_2059	-	fimbrial protein
2013	 47.31	0	2323771..2325108	+	445	145599336	-	YPDSF_2060	-	hypothetical protein
2014	 46.61	0	2325054..2325806	+	250	145599337	-	YPDSF_2061	-	hypothetical protein
2015	 45.45	0	2325807..2327489	+	560	145599338	-	YPDSF_2062	-	hypothetical protein
2016	 40.79	-1	2327486..2327968	+	160	145599339	-	YPDSF_2063	-	hypothetical protein
2017	 35.16	-2	2328326..2328928	-	200	145599340	-	YPDSF_2064	-	LuxR family regulatory protein
2018	 51.78	0	2330190..2331284	-	364	145599341	-	YPDSF_2065	-	murein hydrolase B
2019	 48.82	0	2331613..2332632	+	339	145599342	-	YPDSF_2066	-	iron(III)-binding periplasmic protein
2020	 52.61	0	2332688..2334274	+	528	145599343	-	YPDSF_2067	-	iron(III)-transport system permease
2021	 52.57	0	2334271..2335320	+	349	145599344	-	YPDSF_2068	-	iron(III)-transport ATP-binding protein
2022	 40.89	-1	2335393..2335908	-	171	145599345	-	YPDSF_2069	-	hypothetical protein
2023	 39.92	-1	2336378..2336863	+	161	145599346	-	YPDSF_2070	-	hypothetical protein
2024	 35.69	-2	2337093..2337941	-	282	145599347	-	YPDSF_2071	-	hypothetical protein
2025	 47.26	0	2338772..2341198	+	808	145599348	-	YPDSF_2072	-	dimethyl sulfoxide reductase chain A protein
2026	 50.81	0	2341210..2341827	+	205	145599349	-	YPDSF_2073	-	dimethyl sulfoxide reductase chain B protein
2027	 50.45	0	2341829..2342605	+	258	145599350	-	YPDSF_2074	-	dimethyl sulfoxide reductase chain C protein
2028	 48.74	0	2342963..2343559	+	198	145599351	-	YPDSF_2075	-	hypothetical protein
2029	 52.28	0	2343556..2344125	+	189	145599352	-	YPDSF_2076	-	iron-sulphur protein
2030	 50.08	0	2344371..2345027	-	218	145599353	-	YPDSF_2077	-	putative lipoprotein
2031	 44.28	0	2345024..2345425	-	133	145599354	-	YPDSF_2078	-	lipoprotein
2032	 47.17	0	2345407..2346078	-	223	145599355	-	YPDSF_2079	-	lipoprotein
2033	 50.00	0	2346668..2347099	+	143	145599356	-	YPDSF_2080	-	hypothetical protein
2034	 46.67	0	2347194..2347718	-	174	145599357	-	YPDSF_2081	-	B-type cytochrome
2035	 50.97	0	2347944..2349179	-	411	145599358	-	YPDSF_2082	-	aminotransferase
2036	 50.16	0	2349445..2350692	+	415	145599359	-	YPDSF_2083	-	hypothetical protein
2037	 50.31	0	2350770..2351741	-	323	145599360	glk	YPDSF_2084	-	glucokinase
2038	 48.85	0	2351922..2352398	-	158	145599361	-	YPDSF_2085	-	hypothetical protein
2039	 51.42	0	2352501..2353379	+	292	145599362	-	YPDSF_2086	-	LysR family transcriptional regulator
2040	 48.89	0	2353515..2354504	+	329	145599363	-	YPDSF_2087	-	ion channel protein
2041	 43.72	0	2354675..2355088	+	137	145599364	-	YPDSF_2088	-	hypothetical protein
2042	 48.62	0	2355181..2356410	-	409	145599365	-	YPDSF_2089	-	manganese transport protein MntH
2043	 43.73	0	2356861..2357928	+	355	145599366	-	YPDSF_2090	-	nucleoside permease
2044	 52.87	+1	2357946..2358032	+	28	145599367	-	YPDSF_2091	-	CNT family H+/nucleoside symporter
2045	 49.22	0	2359266..2360681	+	471	145599368	gltX	YPDSF_2092	-	glutamyl-tRNA synthetase
2046	 45.97	0	2361169..2361627	+	152	145599369	-	YPDSF_2093	-	transposase for the IS1541 insertion element
2047	 44.72	0	2361894..2362499	+	201	145599370	-	YPDSF_2094	-	hypothetical protein
2048	 44.25	0	2362631..2362978	+	115	145599371	-	YPDSF_2095	-	hypothetical protein
2049	 45.83	0	2363079..2363294	-	71	145599372	-	YPDSF_2096	-	hypothetical protein
2050	 51.07	0	2363314..2365326	-	670	145599373	ligA	YPDSF_2097	-	NAD-dependent DNA ligase LigA
2051	 49.24	0	2365417..2366403	-	328	145599374	-	YPDSF_2098	-	cell division protein ZipA
2052	 47.89	0	2366652..2367386	+	244	145599375	-	YPDSF_2099	-	putative sulfate transport protein CysZ
2053	 49.95	0	2367543..2368511	+	322	145599376	-	YPDSF_2100	-	cysteine synthase A
2054	 45.74	0	2369010..2369267	+	85	145599377	-	YPDSF_2101	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2055	 46.93	0	2369316..2371043	+	575	145599378	-	YPDSF_2102	-	phosphoenolpyruvate-protein phosphotransferase
2056	 43.33	0	2371092..2371601	+	169	145599379	-	YPDSF_2103	-	glucose-specific PTS system component
2057	 45.75	0	2371744..2372202	-	152	145599380	-	YPDSF_2104	-	transposase for the IS1541 insertion element
2058	 49.19	0	2372472..2373821	-	449	145599381	-	YPDSF_2105	-	two-component system sensor kinase
2059	 47.51	0	2373847..2374530	-	227	145599382	-	YPDSF_2106	-	two-component system response regulator
2060	 49.83	0	2374718..2375923	+	401	145599383	-	YPDSF_2107	-	HlyD family secretion protein
2061	 50.02	0	2375927..2377963	+	678	145599384	-	YPDSF_2108	-	ABC transporter, ATP-binding protein
2062	 42.38	-1	2378218..2379864	-	548	145599385	-	YPDSF_2109	-	pyridine nucleotide-disulphide oxidoreductase
2063	 39.36	-1	2379924..2381384	-	486	145599386	-	YPDSF_2110	-	permease
2064	 39.15	-1	2381721..2382752	-	343	145599387	-	YPDSF_2111	-	peptidase
2065	 36.46	-2	2382749..2382940	-	63	145599388	-	YPDSF_2112	-	hypothetical protein
2066	 39.42	-1	2382974..2384155	-	393	145599389	-	YPDSF_2113	-	aminotransferase
2067	 47.15	0	2384855..2386273	+	472	145599390	-	YPDSF_2114	-	hypothetical protein
2068	 49.71	0	2386506..2388050	+	514	145599391	-	YPDSF_2115	-	two-component sensor histidine kinase
2069	 51.41	0	2388047..2388754	+	235	145599392	-	YPDSF_2116	-	two-component response regulator
2070	 33.17	-2	2389135..2390367	-	410	145599393	-	YPDSF_2117	-	hypothetical protein
2071	 54.38	+1	2390612..2391490	-	292	145599394	cysM	YPDSF_2118	-	cysteine synthase B
2072	 52.29	0	2391661..2392752	-	363	145599395	-	YPDSF_2119	-	sulfate/thiosulfate transporter subunit
2073	 53.08	+1	2392742..2393617	-	291	145599396	cysW	YPDSF_2120	-	sulfate/thiosulfate transporter permease subunit
2074	 53.72	+1	2393617..2394450	-	277	145599397	-	YPDSF_2121	-	sulfate/thiosulfate transporter subunit
2075	 48.46	0	2394450..2395487	-	345	145599398	-	YPDSF_2122	-	thiosulfate transporter subunit
2076	 50.62	0	2395802..2397334	-	510	145599399	-	YPDSF_2123	-	putative sialic acid transporter
2077	 48.92	0	2397939..2398817	-	292	145599400	-	YPDSF_2124	-	transcriptional regulator
2078	 47.98	0	2399006..2399476	-	156	145599401	-	YPDSF_2125	-	hypothetical protein
2079	 56.47	+1	2399558..2400430	-	290	145599402	-	YPDSF_2126	-	N-acetylmannosamine kinase
2080	 37.32	-2	2400699..2401826	+	375	145599403	-	YPDSF_2127	-	hypothetical protein
2081	 55.27	+1	2402032..2402733	+	233	145599404	-	YPDSF_2128	-	N-acetylmannosamine-6-phosphate 2-epimerase
2082	 48.55	0	2402796..2403689	+	297	145599405	-	YPDSF_2129	-	N-acetylneuraminate lyase
2083	 48.22	0	2403787..2404686	-	299	145599406	-	YPDSF_2130	-	hypothetical protein
2084	 49.28	0	2405835..2406248	+	137	145599407	-	YPDSF_2133	-	hypothetical protein
2085	 44.60	0	2406804..2409014	+	736	145599408	-	YPDSF_2134	-	autotransporter
2086	 32.13	-2	2409106..2409522	-	138	145599409	-	YPDSF_2135	-	hypothetical protein
2087	 47.65	0	2409995..2410420	-	141	145599410	-	YPDSF_2136	-	putative acetyltransferase
2088	 53.33	+1	2410703..2411632	+	309	145599411	-	YPDSF_2137	-	coproporphyrinogen III oxidase
2089	 51.20	0	2411632..2412090	+	152	145599412	-	YPDSF_2138	-	hypothetical protein
2090	 51.18	0	2412241..2414520	-	759	145599413	-	YPDSF_2139	-	malic enzyme
2091	 46.79	0	2414716..2415339	-	207	145599414	-	YPDSF_2140	-	hypothetical protein
2092	 46.00	0	2415496..2416095	-	199	145599415	-	YPDSF_2141	-	cytochrome c-type protein NapC
2093	 50.64	0	2416123..2416590	-	155	145599416	napB	YPDSF_2142	-	diheme cytochrome c550
2094	 53.03	+1	2416673..2419165	-	830	145599417	-	YPDSF_2143	-	nitrate reductase
2095	 51.69	0	2419162..2419428	-	88	145599418	-	YPDSF_2144	-	assembly protein for periplasmic nitrate reductase
2096	 52.98	+1	2419418..2419921	-	167	145599419	-	YPDSF_2145	-	ferredoxin-type protein NapF
2097	 45.24	0	2420754..2421383	+	209	145599420	-	YPDSF_2146	-	nitrate/nitrite response regulator protein NarP
2098	 48.39	0	2421396..2421674	-	92	145599421	-	YPDSF_2147	-	hypothetical protein
2099	 51.18	0	2422089..2425220	+	1043	145599422	-	YPDSF_2148	-	aminoglycoside/multidrug efflux system
2100	 39.49	-1	2425451..2426035	+	194	145599423	-	YPDSF_2149	-	hypothetical protein
2101	 48.09	0	2426324..2426872	+	182	145599424	-	YPDSF_2150	-	hypothetical protein
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.