IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1962	 51.80	0	2266009..2266815	-	268	145599285	-	YPDSF_2007	-	hypothetical protein
1963	 53.49	+1	2266819..2267607	-	262	145599286	mepA	YPDSF_2008	-	penicillin-insensitive murein endopeptidase
1964	 52.21	0	2267652..2268737	-	361	145599287	-	YPDSF_2009	-	chorismate synthase
1965	 48.87	0	2268814..2269746	-	310	145599288	-	YPDSF_2010	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1966	 45.10	0	2270035..2270646	+	203	145599289	-	YPDSF_2011	-	hypothetical protein
1967	 51.22	0	2270944..2271435	-	163	145599290	-	YPDSF_2012	-	phosphohistidine phosphatase
1968	 50.19	0	2272004..2274328	-	774	145599291	fadJ	YPDSF_2013	-	multifunctional fatty acid oxidation complex subunit alpha
1969	 53.17	+1	2274328..2275638	-	436	145599292	fadI	YPDSF_2014	-	3-ketoacyl-CoA thiolase
1970	 47.47	0	2275925..2276221	-	98	145599293	-	YPDSF_2015	-	hypothetical protein
1971	 48.66	0	2276635..2277900	+	421	145599294	-	YPDSF_2016	-	long-chain fatty acid outer membrane transporter
1972	 51.50	0	2278007..2278771	-	254	145599295	-	YPDSF_2017	-	VacJ lipoprotein
1973	 49.55	0	2278807..2280033	-	408	145599296	-	YPDSF_2018	-	cytochrome c-type biogenesis protein
1974	 47.19	0	2280033..2280530	-	165	145599297	-	YPDSF_2019	-	cytochrome c-type biogenesis protein
1975	 49.74	0	2280527..2281093	-	188	145599298	-	YPDSF_2020	-	thiol:disulfide interchange protein DsbE
1976	 52.41	0	2281090..2283060	-	656	145599299	-	YPDSF_2021	-	cytochrome c-type biogenesis protein
1977	 51.11	0	2283057..2283551	-	164	145599300	-	YPDSF_2022	-	cytochrome c-type biogenesis protein CcmE
1978	 51.82	0	2283548..2283850	-	100	145599301	-	YPDSF_2023	-	heme exporter protein D
1979	 50.14	0	2283847..2284584	-	245	145599302	-	YPDSF_2024	-	heme exporter protein C
1980	 52.12	0	2284647..2285306	-	219	145599303	-	YPDSF_2025	-	heme exporter protein B
1981	 49.47	0	2285276..2285932	-	218	145599304	-	YPDSF_2026	-	cytochrome c biogenesis protein CcmA
1982	 35.47	-2	2286377..2286844	-	155	145599305	-	YPDSF_2027	-	hypothetical protein
1983	 43.65	0	2287460..2288002	+	180	145599306	-	YPDSF_2028	-	hypothetical protein
1984	 48.29	0	2287947..2290046	+	699	145599307	-	YPDSF_2029	-	membrane protein
1985	 45.91	0	2290422..2290763	+	113	145599308	-	YPDSF_2030	-	hypothetical protein
1986	 43.99	0	2290838..2291203	-	121	145599309	-	YPDSF_2031	-	membrane protein
1987	 44.79	0	2291210..2291689	-	159	145599310	-	YPDSF_2032	-	hypothetical protein
1988	 45.23	0	2291770..2292576	-	268	145599311	-	YPDSF_2033	-	hypothetical protein
1989	 43.23	-1	2292596..2293444	-	282	145599312	-	YPDSF_2034	-	hypothetical protein
1990	 50.57	0	2293444..2293704	-	86	145599313	-	YPDSF_2035	-	hypothetical protein
1991	 50.04	0	2293803..2296082	-	759	145599314	-	YPDSF_2036	-	hypothetical protein
1992	 48.15	0	2300211..2301047	-	278	145599315	-	YPDSF_2039	-	OmpA family protein
1993	 50.38	0	2301063..2301842	-	259	145599316	-	YPDSF_2040	-	transposase/IS protein
1994	 52.79	0	2301842..2302864	-	340	145599317	-	YPDSF_2041	-	transposase for insertion sequence IS100
1995	 48.58	0	2302878..2303546	-	222	145599318	-	YPDSF_2042	-	hypothetical protein
1996	 47.48	0	2303543..2304892	-	449	145599319	-	YPDSF_2043	-	hypothetical protein
1997	 42.78	-1	2304896..2305456	-	186	145599320	-	YPDSF_2044	-	hypothetical protein
1998	 41.23	-1	2305709..2306278	-	189	145599321	-	YPDSF_2045	-	hypothetical protein
1999	 46.24	0	2306520..2308022	-	500	145599322	-	YPDSF_2046	-	hypothetical protein
2000	 41.71	-1	2308046..2308570	-	174	145599323	-	YPDSF_2047	-	hypothetical protein
2001	 42.20	-1	2308675..2309283	-	202	145599324	-	YPDSF_2048	-	fimbrial protein
2002	 46.26	0	2309268..2310458	-	396	145599325	-	YPDSF_2049	-	outer membrane fimbrial usher porin
2003	 49.63	0	2310483..2311691	+	402	145599326	-	YPDSF_2050	-	transposase for the IS285 insertion element
2004	 45.13	0	2311713..2313263	-	516	145599327	-	YPDSF_2051	-	hypothetical protein
2005	 41.21	-1	2313391..2314152	-	253	145599328	-	YPDSF_2052	-	pili chaperone protein
2006	 44.32	0	2314309..2314854	-	181	145599329	-	YPDSF_2053	-	frimbrial protein
2007	 47.94	0	2315055..2317730	-	891	145599330	-	YPDSF_2054	-	Clp ATPase
2008	 49.71	0	2318513..2320393	+	626	145599331	-	YPDSF_2055	-	hypothetical protein
2009	 54.37	+1	2320393..2321238	+	281	145599332	-	YPDSF_2056	-	hypothetical protein
2010	 49.12	0	2321300..2321413	+	37	145599333	-	YPDSF_2057	-	hypothetical protein
2011	 50.17	0	2321512..2322693	+	393	145599334	-	YPDSF_2058	-	hypothetical protein
2012	 45.35	0	2322700..2323731	+	343	145599335	-	YPDSF_2059	-	fimbrial protein
2013	 47.31	0	2323771..2325108	+	445	145599336	-	YPDSF_2060	-	hypothetical protein
2014	 46.61	0	2325054..2325806	+	250	145599337	-	YPDSF_2061	-	hypothetical protein
2015	 45.45	0	2325807..2327489	+	560	145599338	-	YPDSF_2062	-	hypothetical protein
2016	 40.79	-1	2327486..2327968	+	160	145599339	-	YPDSF_2063	-	hypothetical protein
2017	 35.16	-2	2328326..2328928	-	200	145599340	-	YPDSF_2064	-	LuxR family regulatory protein
2018	 51.78	0	2330190..2331284	-	364	145599341	-	YPDSF_2065	-	murein hydrolase B
2019	 48.82	0	2331613..2332632	+	339	145599342	-	YPDSF_2066	-	iron(III)-binding periplasmic protein
2020	 52.61	0	2332688..2334274	+	528	145599343	-	YPDSF_2067	-	iron(III)-transport system permease
2021	 52.57	0	2334271..2335320	+	349	145599344	-	YPDSF_2068	-	iron(III)-transport ATP-binding protein
2022	 40.89	-1	2335393..2335908	-	171	145599345	-	YPDSF_2069	-	hypothetical protein
2023	 39.92	-1	2336378..2336863	+	161	145599346	-	YPDSF_2070	-	hypothetical protein
2024	 35.69	-2	2337093..2337941	-	282	145599347	-	YPDSF_2071	-	hypothetical protein
2025	 47.26	0	2338772..2341198	+	808	145599348	-	YPDSF_2072	-	dimethyl sulfoxide reductase chain A protein
2026	 50.81	0	2341210..2341827	+	205	145599349	-	YPDSF_2073	-	dimethyl sulfoxide reductase chain B protein
2027	 50.45	0	2341829..2342605	+	258	145599350	-	YPDSF_2074	-	dimethyl sulfoxide reductase chain C protein
2028	 48.74	0	2342963..2343559	+	198	145599351	-	YPDSF_2075	-	hypothetical protein
2029	 52.28	0	2343556..2344125	+	189	145599352	-	YPDSF_2076	-	iron-sulphur protein
2030	 50.08	0	2344371..2345027	-	218	145599353	-	YPDSF_2077	-	putative lipoprotein
2031	 44.28	0	2345024..2345425	-	133	145599354	-	YPDSF_2078	-	lipoprotein
2032	 47.17	0	2345407..2346078	-	223	145599355	-	YPDSF_2079	-	lipoprotein
2033	 50.00	0	2346668..2347099	+	143	145599356	-	YPDSF_2080	-	hypothetical protein
2034	 46.67	0	2347194..2347718	-	174	145599357	-	YPDSF_2081	-	B-type cytochrome
2035	 50.97	0	2347944..2349179	-	411	145599358	-	YPDSF_2082	-	aminotransferase
2036	 50.16	0	2349445..2350692	+	415	145599359	-	YPDSF_2083	-	hypothetical protein
2037	 50.31	0	2350770..2351741	-	323	145599360	glk	YPDSF_2084	-	glucokinase
2038	 48.85	0	2351922..2352398	-	158	145599361	-	YPDSF_2085	-	hypothetical protein
2039	 51.42	0	2352501..2353379	+	292	145599362	-	YPDSF_2086	-	LysR family transcriptional regulator
2040	 48.89	0	2353515..2354504	+	329	145599363	-	YPDSF_2087	-	ion channel protein
2041	 43.72	0	2354675..2355088	+	137	145599364	-	YPDSF_2088	-	hypothetical protein
2042	 48.62	0	2355181..2356410	-	409	145599365	-	YPDSF_2089	-	manganese transport protein MntH
2043	 43.73	0	2356861..2357928	+	355	145599366	-	YPDSF_2090	-	nucleoside permease
2044	 52.87	+1	2357946..2358032	+	28	145599367	-	YPDSF_2091	-	CNT family H+/nucleoside symporter
2045	 49.22	0	2359266..2360681	+	471	145599368	gltX	YPDSF_2092	-	glutamyl-tRNA synthetase
2046	 45.97	0	2361169..2361627	+	152	145599369	-	YPDSF_2093	-	transposase for the IS1541 insertion element
2047	 44.72	0	2361894..2362499	+	201	145599370	-	YPDSF_2094	-	hypothetical protein
2048	 44.25	0	2362631..2362978	+	115	145599371	-	YPDSF_2095	-	hypothetical protein
2049	 45.83	0	2363079..2363294	-	71	145599372	-	YPDSF_2096	-	hypothetical protein
2050	 51.07	0	2363314..2365326	-	670	145599373	ligA	YPDSF_2097	-	NAD-dependent DNA ligase LigA
2051	 49.24	0	2365417..2366403	-	328	145599374	-	YPDSF_2098	-	cell division protein ZipA
2052	 47.89	0	2366652..2367386	+	244	145599375	-	YPDSF_2099	-	putative sulfate transport protein CysZ
2053	 49.95	0	2367543..2368511	+	322	145599376	-	YPDSF_2100	-	cysteine synthase A
2054	 45.74	0	2369010..2369267	+	85	145599377	-	YPDSF_2101	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2055	 46.93	0	2369316..2371043	+	575	145599378	-	YPDSF_2102	-	phosphoenolpyruvate-protein phosphotransferase
2056	 43.33	0	2371092..2371601	+	169	145599379	-	YPDSF_2103	-	glucose-specific PTS system component
2057	 45.75	0	2371744..2372202	-	152	145599380	-	YPDSF_2104	-	transposase for the IS1541 insertion element
2058	 49.19	0	2372472..2373821	-	449	145599381	-	YPDSF_2105	-	two-component system sensor kinase
2059	 47.51	0	2373847..2374530	-	227	145599382	-	YPDSF_2106	-	two-component system response regulator
2060	 49.83	0	2374718..2375923	+	401	145599383	-	YPDSF_2107	-	HlyD family secretion protein
2061	 50.02	0	2375927..2377963	+	678	145599384	-	YPDSF_2108	-	ABC transporter, ATP-binding protein
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.