IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1915	 51.75	0	2211039..2211581	-	180	145599238	-	YPDSF_1958	-	NADH dehydrogenase subunit I
1916	 51.64	0	2211596..2212573	-	325	145599239	-	YPDSF_1959	-	NADH dehydrogenase subunit H
1917	 54.21	+1	2212570..2215314	-	914	145599240	-	YPDSF_1960	-	NADH dehydrogenase subunit G
1918	 53.90	+1	2215401..2216786	-	461	145599241	-	YPDSF_1961	-	NADH dehydrogenase I subunit F
1919	 54.08	+1	2216783..2217346	-	187	145599242	-	YPDSF_1962	-	NADH dehydrogenase subunit E
1920	 51.47	0	2217349..2219145	-	598	145599243	-	YPDSF_1963	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1921	 50.29	0	2219286..2219963	-	225	145599244	-	YPDSF_1964	-	NADH dehydrogenase subunit B
1922	 49.90	0	2220065..2220565	-	166	145599245	-	YPDSF_1965	-	NADH dehydrogenase subunit A
1923	 46.84	0	2221244..2222176	-	310	145599246	-	YPDSF_1966	-	LysR family transcriptional regulator
1924	 49.05	0	2223031..2224245	+	404	145599247	-	YPDSF_1967	-	aminotransferase AlaT
1925	 43.94	0	2224396..2224989	+	197	145599248	-	YPDSF_1968	-	hypothetical protein
1926	 50.24	0	2225332..2227224	-	630	145599249	-	YPDSF_1969	-	ion transport protein
1927	 52.21	0	2227456..2228112	-	218	145599250	-	YPDSF_1970	-	putative phosphatase
1928	 46.46	0	2228277..2228771	-	164	145599251	-	YPDSF_1971	-	hypothetical protein
1929	 52.19	0	2229069..2229524	-	151	145599252	-	YPDSF_1972	-	hypothetical protein
1930	 50.46	0	2229946..2231148	+	400	145599253	-	YPDSF_1973	-	acetate kinase
1931	 52.69	0	2231316..2233469	+	717	145599254	-	YPDSF_1974	-	phosphate acetyltransferase
1932	 48.02	0	2233735..2234769	-	344	145599255	-	YPDSF_1975	-	LacI family transcriptional regulator
1933	 47.75	0	2235083..2235526	+	147	145599256	-	YPDSF_1976	-	phosphotransferase enzyme II, A component
1934	 43.06	-1	2235695..2235982	+	95	145599257	-	YPDSF_1977	-	hypothetical protein
1935	 48.21	0	2235995..2237251	+	418	145599258	ulaA	YPDSF_1978	-	ascorbate-specific PTS system enzyme IIC
1936	 51.73	0	2237368..2237916	-	182	145599259	-	YPDSF_1979	-	hypothetical protein
1937	 39.68	-1	2238914..2239606	-	230	145599260	-	YPDSF_1982	-	hypothetical protein
1938	 53.69	+1	2239960..2240868	+	302	145599261	-	YPDSF_1983	-	hypothetical protein
1939	 46.12	0	2240992..2241789	-	265	145599262	-	YPDSF_1984	-	histidine/lysine/arginine/ornithine transporter subunit
1940	 45.89	0	2241803..2242519	-	238	145599263	-	YPDSF_1985	-	histidine transport system permease protein HisM
1941	 49.49	0	2242516..2243202	-	228	145599264	-	YPDSF_1986	-	histidine transport system permease protein HisQ
1942	 44.06	0	2243305..2244087	-	260	145599265	-	YPDSF_1987	-	histidine-binding periplasmic protein
1943	 46.77	0	2244612..2245184	-	190	145599266	-	YPDSF_1988	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1944	 47.43	0	2245431..2246948	-	505	145599267	-	YPDSF_1989	-	amidophosphoribosyltransferase
1945	 44.71	0	2246961..2247470	-	169	145599268	-	YPDSF_1990	-	colicin V production protein
1946	 51.31	0	2247782..2248504	-	240	145599269	-	YPDSF_1991	-	hypothetical protein
1947	 53.10	+1	2248624..2249928	-	434	145599270	-	YPDSF_1992	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
1948	 49.62	0	2250177..2251091	-	304	145599271	-	YPDSF_1993	-	acetyl-CoA carboxylase subunit beta
1949	 45.85	0	2251322..2251984	-	220	145599272	-	YPDSF_1994	-	hypothetical protein
1950	 50.91	0	2252141..2253022	-	293	145599273	truA	YPDSF_1995	-	tRNA pseudouridine synthase A
1951	 53.31	+1	2253022..2254032	-	336	145599274	-	YPDSF_1996	-	putative semialdehyde dehydrogenase
1952	 53.70	+1	2254202..2255389	-	395	145599275	-	YPDSF_1997	-	erythronate-4-phosphate dehydrogenase
1953	 48.85	0	2255376..2256161	-	261	145599276	-	YPDSF_1998	-	AraC family transcription regulator
1954	 49.46	0	2256387..2257304	+	305	145599277	-	YPDSF_1999	-	hypothetical protein
1955	 50.29	0	2257589..2258626	+	345	145599278	-	YPDSF_2000	-	flagella biosynthesis regulator
1956	 46.33	0	2258968..2259498	-	176	145599279	-	YPDSF_2001	-	mannose-resistant/Proteus-like fimbrial protein
1957	 46.98	0	2260286..2260981	+	231	145599280	-	YPDSF_2002	-	aspartate/glutamate racemase
1958	 49.51	0	2261389..2262612	-	407	145599281	-	YPDSF_2003	-	3-oxoacyl-(acyl carrier protein) synthase I
1959	 53.19	+1	2262784..2264853	+	689	145599282	mnmC	YPDSF_2004	-	5-methylaminomethyl-2-thiouridine methyltransferase
1960	 51.97	0	2265031..2265309	-	92	145599283	-	YPDSF_2005	-	hypothetical protein
1961	 47.70	0	2265367..2265909	-	180	145599284	-	YPDSF_2006	-	hypothetical protein
1962	 51.80	0	2266009..2266815	-	268	145599285	-	YPDSF_2007	-	hypothetical protein
1963	 53.49	+1	2266819..2267607	-	262	145599286	mepA	YPDSF_2008	-	penicillin-insensitive murein endopeptidase
1964	 52.21	0	2267652..2268737	-	361	145599287	-	YPDSF_2009	-	chorismate synthase
1965	 48.87	0	2268814..2269746	-	310	145599288	-	YPDSF_2010	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1966	 45.10	0	2270035..2270646	+	203	145599289	-	YPDSF_2011	-	hypothetical protein
1967	 51.22	0	2270944..2271435	-	163	145599290	-	YPDSF_2012	-	phosphohistidine phosphatase
1968	 50.19	0	2272004..2274328	-	774	145599291	fadJ	YPDSF_2013	-	multifunctional fatty acid oxidation complex subunit alpha
1969	 53.17	+1	2274328..2275638	-	436	145599292	fadI	YPDSF_2014	-	3-ketoacyl-CoA thiolase
1970	 47.47	0	2275925..2276221	-	98	145599293	-	YPDSF_2015	-	hypothetical protein
1971	 48.66	0	2276635..2277900	+	421	145599294	-	YPDSF_2016	-	long-chain fatty acid outer membrane transporter
1972	 51.50	0	2278007..2278771	-	254	145599295	-	YPDSF_2017	-	VacJ lipoprotein
1973	 49.55	0	2278807..2280033	-	408	145599296	-	YPDSF_2018	-	cytochrome c-type biogenesis protein
1974	 47.19	0	2280033..2280530	-	165	145599297	-	YPDSF_2019	-	cytochrome c-type biogenesis protein
1975	 49.74	0	2280527..2281093	-	188	145599298	-	YPDSF_2020	-	thiol:disulfide interchange protein DsbE
1976	 52.41	0	2281090..2283060	-	656	145599299	-	YPDSF_2021	-	cytochrome c-type biogenesis protein
1977	 51.11	0	2283057..2283551	-	164	145599300	-	YPDSF_2022	-	cytochrome c-type biogenesis protein CcmE
1978	 51.82	0	2283548..2283850	-	100	145599301	-	YPDSF_2023	-	heme exporter protein D
1979	 50.14	0	2283847..2284584	-	245	145599302	-	YPDSF_2024	-	heme exporter protein C
1980	 52.12	0	2284647..2285306	-	219	145599303	-	YPDSF_2025	-	heme exporter protein B
1981	 49.47	0	2285276..2285932	-	218	145599304	-	YPDSF_2026	-	cytochrome c biogenesis protein CcmA
1982	 35.47	-2	2286377..2286844	-	155	145599305	-	YPDSF_2027	-	hypothetical protein
1983	 43.65	0	2287460..2288002	+	180	145599306	-	YPDSF_2028	-	hypothetical protein
1984	 48.29	0	2287947..2290046	+	699	145599307	-	YPDSF_2029	-	membrane protein
1985	 45.91	0	2290422..2290763	+	113	145599308	-	YPDSF_2030	-	hypothetical protein
1986	 43.99	0	2290838..2291203	-	121	145599309	-	YPDSF_2031	-	membrane protein
1987	 44.79	0	2291210..2291689	-	159	145599310	-	YPDSF_2032	-	hypothetical protein
1988	 45.23	0	2291770..2292576	-	268	145599311	-	YPDSF_2033	-	hypothetical protein
1989	 43.23	-1	2292596..2293444	-	282	145599312	-	YPDSF_2034	-	hypothetical protein
1990	 50.57	0	2293444..2293704	-	86	145599313	-	YPDSF_2035	-	hypothetical protein
1991	 50.04	0	2293803..2296082	-	759	145599314	-	YPDSF_2036	-	hypothetical protein
1992	 48.15	0	2300211..2301047	-	278	145599315	-	YPDSF_2039	-	OmpA family protein
1993	 50.38	0	2301063..2301842	-	259	145599316	-	YPDSF_2040	-	transposase/IS protein
1994	 52.79	0	2301842..2302864	-	340	145599317	-	YPDSF_2041	-	transposase for insertion sequence IS100
1995	 48.58	0	2302878..2303546	-	222	145599318	-	YPDSF_2042	-	hypothetical protein
1996	 47.48	0	2303543..2304892	-	449	145599319	-	YPDSF_2043	-	hypothetical protein
1997	 42.78	-1	2304896..2305456	-	186	145599320	-	YPDSF_2044	-	hypothetical protein
1998	 41.23	-1	2305709..2306278	-	189	145599321	-	YPDSF_2045	-	hypothetical protein
1999	 46.24	0	2306520..2308022	-	500	145599322	-	YPDSF_2046	-	hypothetical protein
2000	 41.71	-1	2308046..2308570	-	174	145599323	-	YPDSF_2047	-	hypothetical protein
2001	 42.20	-1	2308675..2309283	-	202	145599324	-	YPDSF_2048	-	fimbrial protein
2002	 46.26	0	2309268..2310458	-	396	145599325	-	YPDSF_2049	-	outer membrane fimbrial usher porin
2003	 49.63	0	2310483..2311691	+	402	145599326	-	YPDSF_2050	-	transposase for the IS285 insertion element
2004	 45.13	0	2311713..2313263	-	516	145599327	-	YPDSF_2051	-	hypothetical protein
2005	 41.21	-1	2313391..2314152	-	253	145599328	-	YPDSF_2052	-	pili chaperone protein
2006	 44.32	0	2314309..2314854	-	181	145599329	-	YPDSF_2053	-	frimbrial protein
2007	 47.94	0	2315055..2317730	-	891	145599330	-	YPDSF_2054	-	Clp ATPase
2008	 49.71	0	2318513..2320393	+	626	145599331	-	YPDSF_2055	-	hypothetical protein
2009	 54.37	+1	2320393..2321238	+	281	145599332	-	YPDSF_2056	-	hypothetical protein
2010	 49.12	0	2321300..2321413	+	37	145599333	-	YPDSF_2057	-	hypothetical protein
2011	 50.17	0	2321512..2322693	+	393	145599334	-	YPDSF_2058	-	hypothetical protein
2012	 45.35	0	2322700..2323731	+	343	145599335	-	YPDSF_2059	-	fimbrial protein
2013	 47.31	0	2323771..2325108	+	445	145599336	-	YPDSF_2060	-	hypothetical protein
2014	 46.61	0	2325054..2325806	+	250	145599337	-	YPDSF_2061	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.