IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1867	 52.23	0	2158174..2159115	+	313	145599190	-	YPDSF_1908	-	LlysR family transcriptional regulatory protein
1868	 40.50	-1	2159362..2160366	+	334	145599191	-	YPDSF_1909	-	LacI family transcriptional regulator
1869	 51.66	0	2160499..2161491	-	330	145599192	-	YPDSF_1910	-	sugar transport system, permease protein
1870	 46.30	0	2163019..2163936	-	305	145599193	-	YPDSF_1913	-	sugar binding protein precursor
1871	 47.03	0	2164111..2165337	-	408	145599194	-	YPDSF_1914	-	zinc-binding dehydrogenase
1872	 32.23	-2	2165920..2166642	-	240	145599195	-	YPDSF_1915	-	hypothetical protein
1873	 38.86	-1	2166784..2167326	-	180	145599196	-	YPDSF_1916	-	hypothetical protein
1874	 46.22	0	2167564..2168502	-	312	145599197	-	YPDSF_1917	-	membrane protein
1875	 48.38	0	2168818..2169342	-	174	145599198	ompX	YPDSF_1918	-	outer membrane protein X
1876	 50.68	0	2169747..2170634	+	295	145599199	-	YPDSF_1919	-	threonine and homoserine efflux system
1877	 52.41	0	2170650..2171147	+	165	145599200	-	YPDSF_1920	-	hypothetical protein
1878	 52.77	0	2171170..2171946	+	258	145599201	-	YPDSF_1921	-	trans-aconitate 2-methyltransferase
1879	 45.44	0	2172203..2172706	+	167	145599202	-	YPDSF_1922	-	DNA starvation/stationary phase protection protein Dps
1880	 41.67	-1	2173026..2174153	+	375	145599203	-	YPDSF_1923	-	hypothetical protein
1881	 46.10	0	2174723..2175466	+	247	145599204	glnH	YPDSF_1924	-	glutamine ABC transporter periplasmic protein
1882	 52.05	0	2175501..2176157	+	218	145599205	glnP	YPDSF_1925	-	glutamine ABC transporter permease protein
1883	 49.75	0	2176067..2176876	+	269	145599206	glnQ	YPDSF_1926	-	glutamine ABC transporter ATP-binding protein
1884	 47.95	0	2177100..2178392	-	430	145599207	-	YPDSF_1927	-	chemotactic transducer
1885	 17.65	-2	2178878..2178979	+	33	145599208	-	YPDSF_1928	-	hypothetical protein
1886	 49.36	0	2179161..2180171	-	336	145599209	-	YPDSF_1929	-	putative SAM-dependent methyltransferase
1887	 45.59	0	2180459..2180719	+	86	145599210	-	YPDSF_1930	-	hypothetical protein
1888	 38.89	-1	2180724..2180867	-	47	145599211	-	YPDSF_1931	-	hypothetical protein
1889	 51.46	0	2181100..2182059	-	319	145599212	-	YPDSF_1932	-	hypothetical protein
1890	 57.70	+2	2182125..2183540	-	471	145599213	-	YPDSF_1933	-	O-succinylbenzoic acid--CoA ligase
1891	 57.00	+1	2183528..2184499	-	323	145599214	-	YPDSF_1934	-	O-succinylbenzoate synthase
1892	 51.98	0	2184499..2185356	-	285	145599215	-	YPDSF_1935	-	naphthoate synthase
1893	 54.46	+1	2185370..2186188	-	272	145599216	-	YPDSF_1936	-	acyl-CoA thioester hydrolase YfbB
1894	 56.87	+1	2186185..2187888	-	567	145599217	-	YPDSF_1937	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1895	 51.31	0	2188116..2189489	-	457	145599218	-	YPDSF_1938	-	menaquinone-specific isochorismate synthase
1896	 45.74	0	2190011..2190655	-	214	145599219	-	YPDSF_1939	-	hypothetical protein
1897	 47.90	0	2191210..2191518	-	102	145599220	-	YPDSF_1940	-	hypothetical protein
1898	 35.12	-2	2191702..2191869	+	55	145599221	-	YPDSF_1941	-	hypothetical protein
1899	 33.33	-2	2192043..2192225	+	60	145599222	-	YPDSF_1942	-	hypothetical protein
1900	 53.24	+1	2192444..2194312	-	622	145599223	-	YPDSF_1943	-	phosphogluconate dehydratase
1901	 51.94	0	2194322..2194837	-	171	145599224	-	YPDSF_1944	-	hypothetical protein
1902	 49.96	0	2194867..2196183	-	438	145599225	-	YPDSF_1945	-	sugar transporter
1903	 48.05	0	2196729..2197679	-	316	145599226	-	YPDSF_1946	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1904	 47.03	0	2198145..2199137	-	330	145599227	-	YPDSF_1947	-	LacI family transcriptional regulator
1905	 51.25	0	2199606..2200889	+	427	145599228	-	YPDSF_1948	-	putative lipoprotein
1906	 44.14	0	2201543..2202412	+	289	145599229	-	YPDSF_1949	-	gluconate 5-dehydrogenase
1907	 50.84	0	2202461..2202997	+	178	145599230	-	YPDSF_1950	-	thermosensitive gluconokinase
1908	 49.36	0	2203075..2203542	+	155	145599231	-	YPDSF_1951	-	hypothetical protein
1909	 35.68	-2	2203873..2205063	-	396	145599232	-	YPDSF_1952	-	hypothetical protein
1910	 53.83	+1	2205299..2206762	-	487	145599233	-	YPDSF_1953	-	NADH dehydrogenase subunit N
1911	 51.40	0	2206769..2208301	-	510	145599234	-	YPDSF_1954	-	NADH dehydrogenase subunit M
1912	 54.20	+1	2208341..2210185	-	614	145599235	-	YPDSF_1955	-	NADH dehydrogenase subunit L
1913	 55.12	+1	2210182..2210484	-	100	145599236	-	YPDSF_1956	-	NADH dehydrogenase subunit K
1914	 51.65	0	2210481..2211026	-	181	145599237	-	YPDSF_1957	-	NADH dehydrogenase subunit J
1915	 51.75	0	2211039..2211581	-	180	145599238	-	YPDSF_1958	-	NADH dehydrogenase subunit I
1916	 51.64	0	2211596..2212573	-	325	145599239	-	YPDSF_1959	-	NADH dehydrogenase subunit H
1917	 54.21	+1	2212570..2215314	-	914	145599240	-	YPDSF_1960	-	NADH dehydrogenase subunit G
1918	 53.90	+1	2215401..2216786	-	461	145599241	-	YPDSF_1961	-	NADH dehydrogenase I subunit F
1919	 54.08	+1	2216783..2217346	-	187	145599242	-	YPDSF_1962	-	NADH dehydrogenase subunit E
1920	 51.47	0	2217349..2219145	-	598	145599243	-	YPDSF_1963	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1921	 50.29	0	2219286..2219963	-	225	145599244	-	YPDSF_1964	-	NADH dehydrogenase subunit B
1922	 49.90	0	2220065..2220565	-	166	145599245	-	YPDSF_1965	-	NADH dehydrogenase subunit A
1923	 46.84	0	2221244..2222176	-	310	145599246	-	YPDSF_1966	-	LysR family transcriptional regulator
1924	 49.05	0	2223031..2224245	+	404	145599247	-	YPDSF_1967	-	aminotransferase AlaT
1925	 43.94	0	2224396..2224989	+	197	145599248	-	YPDSF_1968	-	hypothetical protein
1926	 50.24	0	2225332..2227224	-	630	145599249	-	YPDSF_1969	-	ion transport protein
1927	 52.21	0	2227456..2228112	-	218	145599250	-	YPDSF_1970	-	putative phosphatase
1928	 46.46	0	2228277..2228771	-	164	145599251	-	YPDSF_1971	-	hypothetical protein
1929	 52.19	0	2229069..2229524	-	151	145599252	-	YPDSF_1972	-	hypothetical protein
1930	 50.46	0	2229946..2231148	+	400	145599253	-	YPDSF_1973	-	acetate kinase
1931	 52.69	0	2231316..2233469	+	717	145599254	-	YPDSF_1974	-	phosphate acetyltransferase
1932	 48.02	0	2233735..2234769	-	344	145599255	-	YPDSF_1975	-	LacI family transcriptional regulator
1933	 47.75	0	2235083..2235526	+	147	145599256	-	YPDSF_1976	-	phosphotransferase enzyme II, A component
1934	 43.06	-1	2235695..2235982	+	95	145599257	-	YPDSF_1977	-	hypothetical protein
1935	 48.21	0	2235995..2237251	+	418	145599258	ulaA	YPDSF_1978	-	ascorbate-specific PTS system enzyme IIC
1936	 51.73	0	2237368..2237916	-	182	145599259	-	YPDSF_1979	-	hypothetical protein
1937	 39.68	-1	2238914..2239606	-	230	145599260	-	YPDSF_1982	-	hypothetical protein
1938	 53.69	+1	2239960..2240868	+	302	145599261	-	YPDSF_1983	-	hypothetical protein
1939	 46.12	0	2240992..2241789	-	265	145599262	-	YPDSF_1984	-	histidine/lysine/arginine/ornithine transporter subunit
1940	 45.89	0	2241803..2242519	-	238	145599263	-	YPDSF_1985	-	histidine transport system permease protein HisM
1941	 49.49	0	2242516..2243202	-	228	145599264	-	YPDSF_1986	-	histidine transport system permease protein HisQ
1942	 44.06	0	2243305..2244087	-	260	145599265	-	YPDSF_1987	-	histidine-binding periplasmic protein
1943	 46.77	0	2244612..2245184	-	190	145599266	-	YPDSF_1988	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1944	 47.43	0	2245431..2246948	-	505	145599267	-	YPDSF_1989	-	amidophosphoribosyltransferase
1945	 44.71	0	2246961..2247470	-	169	145599268	-	YPDSF_1990	-	colicin V production protein
1946	 51.31	0	2247782..2248504	-	240	145599269	-	YPDSF_1991	-	hypothetical protein
1947	 53.10	+1	2248624..2249928	-	434	145599270	-	YPDSF_1992	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
1948	 49.62	0	2250177..2251091	-	304	145599271	-	YPDSF_1993	-	acetyl-CoA carboxylase subunit beta
1949	 45.85	0	2251322..2251984	-	220	145599272	-	YPDSF_1994	-	hypothetical protein
1950	 50.91	0	2252141..2253022	-	293	145599273	truA	YPDSF_1995	-	tRNA pseudouridine synthase A
1951	 53.31	+1	2253022..2254032	-	336	145599274	-	YPDSF_1996	-	putative semialdehyde dehydrogenase
1952	 53.70	+1	2254202..2255389	-	395	145599275	-	YPDSF_1997	-	erythronate-4-phosphate dehydrogenase
1953	 48.85	0	2255376..2256161	-	261	145599276	-	YPDSF_1998	-	AraC family transcription regulator
1954	 49.46	0	2256387..2257304	+	305	145599277	-	YPDSF_1999	-	hypothetical protein
1955	 50.29	0	2257589..2258626	+	345	145599278	-	YPDSF_2000	-	flagella biosynthesis regulator
1956	 46.33	0	2258968..2259498	-	176	145599279	-	YPDSF_2001	-	mannose-resistant/Proteus-like fimbrial protein
1957	 46.98	0	2260286..2260981	+	231	145599280	-	YPDSF_2002	-	aspartate/glutamate racemase
1958	 49.51	0	2261389..2262612	-	407	145599281	-	YPDSF_2003	-	3-oxoacyl-(acyl carrier protein) synthase I
1959	 53.19	+1	2262784..2264853	+	689	145599282	mnmC	YPDSF_2004	-	5-methylaminomethyl-2-thiouridine methyltransferase
1960	 51.97	0	2265031..2265309	-	92	145599283	-	YPDSF_2005	-	hypothetical protein
1961	 47.70	0	2265367..2265909	-	180	145599284	-	YPDSF_2006	-	hypothetical protein
1962	 51.80	0	2266009..2266815	-	268	145599285	-	YPDSF_2007	-	hypothetical protein
1963	 53.49	+1	2266819..2267607	-	262	145599286	mepA	YPDSF_2008	-	penicillin-insensitive murein endopeptidase
1964	 52.21	0	2267652..2268737	-	361	145599287	-	YPDSF_2009	-	chorismate synthase
1965	 48.87	0	2268814..2269746	-	310	145599288	-	YPDSF_2010	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1966	 45.10	0	2270035..2270646	+	203	145599289	-	YPDSF_2011	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.