IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1798	 48.40	0	2075101..2076534	-	477	145599121	-	YPDSF_1839	-	glucose-specific PTS system IIBC components
1799	 49.63	0	2076840..2077649	-	269	145599122	-	YPDSF_1840	-	putative metallodependent hydrolase
1800	 52.39	0	2077664..2078686	-	340	145599123	-	YPDSF_1841	-	DNA polymerase III subunit delta'
1801	 53.83	+1	2078686..2079324	-	212	145599124	tdk	YPDSF_1842	-	thymidylate kinase
1802	 46.30	0	2079314..2080339	-	341	145599125	-	YPDSF_1843	-	hypothetical protein
1803	 48.82	0	2080608..2081414	-	268	145599126	-	YPDSF_1844	-	4-amino-4-deoxychorismate lyase
1804	 45.97	0	2081830..2082288	-	152	145599127	-	YPDSF_1845	-	transposase for the IS1541 insertion element
1805	 49.28	0	2082488..2083729	-	413	145599128	-	YPDSF_1846	-	3-oxoacyl-(acyl carrier protein) synthase II
1806	 43.46	0	2083824..2084060	-	78	145599129	acpP	YPDSF_1847	-	acyl carrier protein
1807	 48.30	0	2084214..2084948	-	244	145599130	fabG	YPDSF_1848	-	3-ketoacyl-(acyl-carrier-protein) reductase
1808	 51.51	0	2084962..2085891	-	309	145599131	-	YPDSF_1849	-	malonyl CoA-acyl carrier protein transacylase
1809	 50.68	0	2085929..2086879	-	316	145599132	-	YPDSF_1850	-	3-oxoacyl-(acyl carrier protein) synthase III
1810	 52.27	0	2086886..2087920	-	344	145599133	-	YPDSF_1851	-	putative glycerol-3-phosphate acyltransferase PlsX
1811	 55.36	+1	2087954..2088121	-	55	145599134	rpmF	YPDSF_1852	-	50S ribosomal protein L32
1812	 46.10	0	2088134..2088658	-	174	145599135	-	YPDSF_1853	-	hypothetical protein
1813	 47.29	0	2088788..2089396	+	202	145599136	-	YPDSF_1854	-	Maf-like protein
1814	 50.36	0	2089519..2090481	-	320	145599137	-	YPDSF_1855	-	23S rRNA pseudouridylate synthase C
1815	 51.08	0	2091056..2094706	+	1216	145599138	rne	YPDSF_1856	-	ribonuclease E
1816	 44.44	0	2094754..2094870	-	38	145599139	-	YPDSF_1857	-	hypothetical protein
1817	 41.67	-1	2094964..2095251	-	95	145599140	-	YPDSF_1858	-	hypothetical protein
1818	 49.57	0	2095486..2096532	+	348	145599141	-	YPDSF_1859	-	dihydroorotase
1819	 45.12	0	2096845..2097090	+	81	145599142	-	YPDSF_1860	-	DNA damage-inducible protein I
1820	 42.09	-1	2097596..2097892	+	98	145599143	bssS	YPDSF_1861	-	biofilm formation regulatory protein BssS
1821	 49.63	0	2097855..2099063	-	402	145599144	-	YPDSF_1862	-	transposase for the IS285 insertion element
1822	 48.30	0	2099424..2100539	+	371	145599145	solA	YPDSF_1863	-	N-methyltryptophan oxidase
1823	 37.72	-2	2100806..2101420	+	204	145599146	-	YPDSF_1864	-	LuxR family regulatory protein
1824	 46.08	0	2101992..2103050	-	352	145599147	tqsA	YPDSF_1865	-	putative transport protein
1825	 46.16	0	2103199..2104266	-	355	145599148	-	YPDSF_1866	-	hypothetical protein
1826	 44.96	0	2104310..2104438	-	42	145599149	-	YPDSF_1867	-	hypothetical protein
1827	 46.17	0	2104625..2105029	-	134	145599150	-	YPDSF_1868	-	hypothetical protein
1828	 48.25	0	2105035..2105148	+	37	145599151	-	YPDSF_1869	-	hypothetical protein
1829	 44.40	0	2105317..2105994	-	225	145599152	-	YPDSF_1870	-	hypothetical protein
1830	 36.90	-2	2106425..2107069	+	214	145599153	-	YPDSF_1871	-	N-acylhomoserine lactone synthase YpeI
1831	 33.33	-2	2107062..2107799	-	245	145599154	-	YPDSF_1872	-	quorum-sensing transcriptional activator YpeR
1832	 50.38	0	2108286..2109212	-	308	145599155	-	YPDSF_1873	-	LysR family transcriptional regulator
1833	 47.90	0	2109660..2111018	+	452	145599156	-	YPDSF_1874	-	transporter protein
1834	 51.19	0	2111065..2111568	+	167	145599157	-	YPDSF_1875	-	hypothetical protein
1835	 47.16	0	2111579..2112598	+	339	145599158	-	YPDSF_1876	-	oxidoreductase
1836	 50.63	0	2112676..2113230	-	184	145599159	-	YPDSF_1877	-	hypothetical protein
1837	 48.26	0	2113241..2114245	-	334	145599160	-	YPDSF_1878	-	hypothetical protein
1838	 51.21	0	2114263..2115213	-	316	145599161	-	YPDSF_1879	-	hypothetical protein
1839	 44.84	0	2115210..2116556	-	448	145599162	-	YPDSF_1880	-	hypothetical protein
1840	 48.60	0	2116965..2120252	-	1095	145599163	-	YPDSF_1881	-	hypothetical protein
1841	 47.81	0	2120249..2121229	-	326	145599164	-	YPDSF_1882	-	hypothetical protein
1842	 50.36	0	2122316..2123560	+	414	145599165	-	YPDSF_1883	-	membrane protein
1843	 46.04	0	2124173..2125447	-	424	145599166	-	YPDSF_1884	-	hypothetical protein
1844	 43.05	-1	2125486..2126607	-	373	145599167	-	YPDSF_1885	-	hypothetical protein
1845	 48.99	0	2126724..2127662	-	312	145599168	-	YPDSF_1886	-	hypothetical protein
1846	 51.80	0	2127689..2128744	-	351	145599169	-	YPDSF_1887	-	hypothetical protein
1847	 41.33	-1	2128891..2129715	-	274	145599170	-	YPDSF_1888	-	sugar ABC transporter, permease protein
1848	 41.21	-1	2129716..2130591	-	291	145599171	-	YPDSF_1889	-	sugar ABC transporter, permease protein
1849	 45.61	0	2130700..2131986	-	428	145599172	-	YPDSF_1890	-	solute-binding protein
1850	 46.49	0	2132258..2133298	+	346	145599173	-	YPDSF_1891	-	LacI family transcriptional regulator
1851	 46.29	0	2133315..2134703	+	462	145599174	-	YPDSF_1892	-	phosphomannomutase
1852	 44.72	0	2134803..2135882	+	359	145599175	-	YPDSF_1893	-	mannitol transport ATP-binding protein
1853	 47.62	0	2136010..2136135	-	41	145599176	-	YPDSF_1894	-	hypothetical protein
1854	 39.74	-1	2136147..2136677	-	176	145599177	-	YPDSF_1895	-	hypothetical protein
1855	 47.59	0	2136950..2137447	-	165	145599178	-	YPDSF_1896	-	hypothetical protein
1856	 38.69	-1	2138048..2138215	-	55	145599179	-	YPDSF_1897	-	hypothetical protein
1857	 33.84	-2	2138418..2138615	-	65	145599180	-	YPDSF_1898	-	hypothetical protein
1858	 51.72	0	2138625..2140658	-	677	145599181	-	YPDSF_1899	-	hypothetical protein
1859	 48.41	0	2141322..2141573	-	83	145599182	-	YPDSF_1900	-	hypothetical protein
1860	 32.16	-2	2141818..2142327	-	169	145599183	-	YPDSF_1901	-	hypothetical protein
1861	 57.47	+1	2142329..2149876	-	2515	145599184	-	YPDSF_1902	-	hemolysin
1862	 53.94	+1	2150080..2151768	-	562	145599185	-	YPDSF_1903	-	hemolysin activator protein
1863	 46.79	0	2152421..2153386	-	321	145599186	-	YPDSF_1904	-	dioxygenase beta subunit
1864	 47.29	0	2153482..2154606	-	374	145599187	-	YPDSF_1905	-	dioxygenase alpha subunit
1865	 49.12	0	2154723..2156204	-	493	162202301	-	YPDSF_1906	-	putative transporter
1866	 49.64	0	2156986..2158083	-	365	145599189	-	YPDSF_1907	-	tartrate dehydrogenase
1867	 52.23	0	2158174..2159115	+	313	145599190	-	YPDSF_1908	-	LlysR family transcriptional regulatory protein
1868	 40.50	-1	2159362..2160366	+	334	145599191	-	YPDSF_1909	-	LacI family transcriptional regulator
1869	 51.66	0	2160499..2161491	-	330	145599192	-	YPDSF_1910	-	sugar transport system, permease protein
1870	 46.30	0	2163019..2163936	-	305	145599193	-	YPDSF_1913	-	sugar binding protein precursor
1871	 47.03	0	2164111..2165337	-	408	145599194	-	YPDSF_1914	-	zinc-binding dehydrogenase
1872	 32.23	-2	2165920..2166642	-	240	145599195	-	YPDSF_1915	-	hypothetical protein
1873	 38.86	-1	2166784..2167326	-	180	145599196	-	YPDSF_1916	-	hypothetical protein
1874	 46.22	0	2167564..2168502	-	312	145599197	-	YPDSF_1917	-	membrane protein
1875	 48.38	0	2168818..2169342	-	174	145599198	ompX	YPDSF_1918	-	outer membrane protein X
1876	 50.68	0	2169747..2170634	+	295	145599199	-	YPDSF_1919	-	threonine and homoserine efflux system
1877	 52.41	0	2170650..2171147	+	165	145599200	-	YPDSF_1920	-	hypothetical protein
1878	 52.77	0	2171170..2171946	+	258	145599201	-	YPDSF_1921	-	trans-aconitate 2-methyltransferase
1879	 45.44	0	2172203..2172706	+	167	145599202	-	YPDSF_1922	-	DNA starvation/stationary phase protection protein Dps
1880	 41.67	-1	2173026..2174153	+	375	145599203	-	YPDSF_1923	-	hypothetical protein
1881	 46.10	0	2174723..2175466	+	247	145599204	glnH	YPDSF_1924	-	glutamine ABC transporter periplasmic protein
1882	 52.05	0	2175501..2176157	+	218	145599205	glnP	YPDSF_1925	-	glutamine ABC transporter permease protein
1883	 49.75	0	2176067..2176876	+	269	145599206	glnQ	YPDSF_1926	-	glutamine ABC transporter ATP-binding protein
1884	 47.95	0	2177100..2178392	-	430	145599207	-	YPDSF_1927	-	chemotactic transducer
1885	 17.65	-2	2178878..2178979	+	33	145599208	-	YPDSF_1928	-	hypothetical protein
1886	 49.36	0	2179161..2180171	-	336	145599209	-	YPDSF_1929	-	putative SAM-dependent methyltransferase
1887	 45.59	0	2180459..2180719	+	86	145599210	-	YPDSF_1930	-	hypothetical protein
1888	 38.89	-1	2180724..2180867	-	47	145599211	-	YPDSF_1931	-	hypothetical protein
1889	 51.46	0	2181100..2182059	-	319	145599212	-	YPDSF_1932	-	hypothetical protein
1890	 57.70	+2	2182125..2183540	-	471	145599213	-	YPDSF_1933	-	O-succinylbenzoic acid--CoA ligase
1891	 57.00	+1	2183528..2184499	-	323	145599214	-	YPDSF_1934	-	O-succinylbenzoate synthase
1892	 51.98	0	2184499..2185356	-	285	145599215	-	YPDSF_1935	-	naphthoate synthase
1893	 54.46	+1	2185370..2186188	-	272	145599216	-	YPDSF_1936	-	acyl-CoA thioester hydrolase YfbB
1894	 56.87	+1	2186185..2187888	-	567	145599217	-	YPDSF_1937	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1895	 51.31	0	2188116..2189489	-	457	145599218	-	YPDSF_1938	-	menaquinone-specific isochorismate synthase
1896	 45.74	0	2190011..2190655	-	214	145599219	-	YPDSF_1939	-	hypothetical protein
1897	 47.90	0	2191210..2191518	-	102	145599220	-	YPDSF_1940	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.