IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1713	 40.83	-1	1978049..1978288	+	79	145599036	-	YPDSF_1754	-	hypothetical protein
1714	 47.95	0	1978398..1978787	-	129	145599037	-	YPDSF_1755	-	hypothetical protein
1715	 45.24	0	1979055..1979180	+	41	145599038	-	YPDSF_1756	-	hypothetical protein
1716	 52.79	0	1979194..1980216	+	340	145599039	-	YPDSF_1757	-	transposase for insertion sequence IS100
1717	 50.38	0	1980216..1980995	+	259	145599040	-	YPDSF_1758	-	transposase/IS protein
1718	 48.13	0	1981946..1983202	-	418	145599041	-	YPDSF_1759	-	lipoprotein
1719	 43.78	0	1983595..1983843	-	82	145599042	-	YPDSF_1760	-	hypothetical protein
1720	 45.04	0	1984990..1986219	+	409	145599043	-	YPDSF_1761	-	alanine racemase
1721	 41.61	-1	1986838..1987791	-	317	145599044	-	YPDSF_1762	-	hypothetical protein
1722	 58.06	+2	1987891..1988436	-	181	145599045	-	YPDSF_1763	-	surface protein
1723	 58.16	+2	1988312..1990522	-	736	145599046	-	YPDSF_1764	-	hypothetical protein
1724	 41.70	-1	1990879..1991643	-	254	145599047	-	YPDSF_1765	-	N-acetylmuramoyl-L-alanine amidase
1725	 37.50	-2	1991775..1991894	+	39	145599048	-	YPDSF_1766	-	hypothetical protein
1726	 48.99	0	1992214..1992858	-	214	145599049	-	YPDSF_1767	-	chemotaxis regulator CheZ
1727	 45.90	0	1992868..1993257	-	129	145599050	-	YPDSF_1768	-	chemotaxis regulatory protein CheY
1728	 53.23	+1	1993417..1994406	-	329	145599051	-	YPDSF_1769	-	protein-glutamate methylesterase
1729	 50.23	0	1994406..1995293	-	295	145599052	-	YPDSF_1770	-	chemotaxis methyltransferase CheR
1730	 50.90	0	1995451..1997061	-	536	145599053	-	YPDSF_1771	-	hypothetical protein
1731	 48.03	0	1997245..1998918	-	557	145599054	-	YPDSF_1772	-	methyl-accepting chemotaxis protein
1732	 45.07	0	1999159..1999797	-	212	145599055	-	YPDSF_1773	-	hypothetical protein
1733	 51.20	0	1999929..2002805	-	958	145599056	-	YPDSF_1774	-	integral membrane protein
1734	 53.11	+1	2003333..2007139	-	1268	145599057	-	YPDSF_1775	-	hypothetical protein
1735	 37.09	-2	2007614..2008279	-	221	145599058	-	YPDSF_1776	-	putative DNA-binding protein
1736	 43.06	-1	2008469..2009455	+	328	145599059	-	YPDSF_1777	-	hypothetical protein
1737	 41.80	-1	2009452..2009829	+	125	145599060	-	YPDSF_1778	-	YjgF-family lipoprotein
1738	 43.53	0	2009842..2011077	+	411	145599061	-	YPDSF_1779	-	membrane protein
1739	 47.39	0	2011369..2011866	-	165	145599062	-	YPDSF_1780	-	purine-binding chemotaxis protein
1740	 50.18	0	2012029..2014194	-	721	145599063	-	YPDSF_1781	-	chemotaxis protein CheA
1741	 48.92	0	2014211..2015512	-	433	145599064	motB	YPDSF_1782	-	flagellar motor protein MotB
1742	 48.42	0	2015509..2016396	-	295	145599065	-	YPDSF_1783	-	flagellar motor protein MotA
1743	 48.11	0	2016601..2017182	-	193	145599066	-	YPDSF_1784	-	transcriptional activator FlhC
1744	 37.21	-2	2017280..2017537	-	85	145599067	-	YPDSF_1785	-	hypothetical protein
1745	 46.74	0	2018725..2021424	-	899	145599068	-	YPDSF_1786	-	Mg(2+) transport ATPase protein B
1746	 47.93	0	2021825..2022523	-	232	145599069	-	YPDSF_1787	-	Mg(2+) transport ATPase protein C
1747	 47.80	0	2023649..2024968	+	439	145599070	-	YPDSF_1788	-	hypothetical protein
1748	 49.35	0	2024922..2025383	+	153	145599071	-	YPDSF_1789	-	methyl-accepting chemotaxis protein III (MCP-III
1749	 48.96	0	2025566..2025757	-	63	145599072	-	YPDSF_1790	-	hypothetical protein
1750	 46.01	0	2025972..2026184	-	70	145599073	-	YPDSF_1791	-	cold shock protein
1751	 49.89	0	2026725..2029907	+	1060	145599074	lacZ	YPDSF_1792	-	beta-D-galactosidase
1752	 50.45	0	2030314..2031324	+	336	145599075	-	YPDSF_1793	-	Zinc-binding dehydrogenase
1753	 35.58	-2	2031607..2032140	+	177	145599076	-	YPDSF_1794	-	hypothetical protein
1754	 44.23	0	2032228..2032383	+	51	145599077	-	YPDSF_1795	-	hypothetical protein
1755	 44.22	0	2032646..2033095	+	149	145599078	-	YPDSF_1796	-	transcription regulator AsnC
1756	 47.67	0	2033187..2034086	+	299	145599079	-	YPDSF_1797	-	hypothetical protein
1757	 46.08	0	2034389..2034592	+	67	145599080	-	YPDSF_1798	-	hypothetical protein
1758	 48.79	0	2034894..2036219	-	441	145599081	-	YPDSF_1799	-	phosphoanhydride phosphorylase
1759	 40.86	-1	2036431..2036523	+	30	145599082	-	YPDSF_1800	-	hypothetical protein
1760	 53.85	+1	2036520..2036714	-	64	145599083	-	YPDSF_1801	-	hypothetical protein
1761	 48.53	0	2036751..2037158	-	135	145599084	-	YPDSF_1802	-	hypothetical protein
1762	 50.82	0	2037294..2038151	+	285	145599085	-	YPDSF_1803	-	hypothetical protein
1763	 50.22	0	2039071..2040651	+	526	145599086	-	YPDSF_1804	-	methyl-accepting chemotaxis protein
1764	 45.98	0	2040771..2041031	+	86	145599087	-	YPDSF_1805	-	hypothetical protein
1765	 49.14	0	2041307..2042350	+	347	145599088	-	YPDSF_1806	-	LacI family sucrose operon repressor
1766	 46.01	0	2042496..2043749	-	417	145599089	-	YPDSF_1807	-	isocitrate dehydrogenase
1767	 49.28	0	2043880..2044506	+	208	145599090	-	YPDSF_1808	-	pseudouridine synthase
1768	 49.44	0	2044499..2044945	+	148	145599091	-	YPDSF_1809	-	hypothetical protein
1769	 49.91	0	2045132..2046247	+	371	145599092	trmU	YPDSF_1810	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1770	 51.20	0	2046305..2046931	+	208	145599093	-	YPDSF_1811	-	hypothetical protein
1771	 47.56	0	2046992..2048362	+	456	145599094	-	YPDSF_1812	-	adenylosuccinate lyase
1772	 44.07	0	2048550..2049173	+	207	145599095	-	YPDSF_1813	-	lipoprotein
1773	 48.07	0	2049384..2050055	+	223	145599096	-	YPDSF_1814	-	DNA-binding transcriptional regulator PhoP
1774	 46.19	0	2050061..2051515	+	484	145599097	-	YPDSF_1815	-	sensor protein PhoQ
1775	 48.30	0	2051545..2052720	+	391	145599098	-	YPDSF_1816	-	hypothetical protein
1776	 45.31	0	2053141..2054376	-	411	145599099	-	YPDSF_1817	-	peptidase T
1777	 48.15	0	2054706..2055542	-	278	145599100	-	YPDSF_1818	-	NAD-dependent deacetylase
1778	 51.79	0	2055591..2055758	-	55	145599101	-	YPDSF_1819	-	hypothetical protein
1779	 50.58	0	2055736..2056506	-	256	145599102	-	YPDSF_1820	-	N-acetyl-D-glucosamine kinase
1780	 48.96	0	2056525..2057772	-	415	145599103	-	YPDSF_1821	-	outer membrane-specific lipoprotein transporter subunit LolE
1781	 49.36	0	2057772..2058476	-	234	145599104	lolD	YPDSF_1822	-	lipoprotein transporter ATP-binding subunit
1782	 52.04	0	2058469..2059671	-	400	145599105	-	YPDSF_1823	-	outer membrane-specific lipoprotein transporter subunit LolC
1783	 51.23	0	2059941..2063387	+	1148	145599106	-	YPDSF_1824	-	transcription-repair coupling factor
1784	 49.44	0	2063626..2064165	-	179	145599107	-	YPDSF_1825	-	hypothetical protein
1785	 49.63	0	2064495..2065703	-	402	145599108	-	YPDSF_1826	-	transposase for the IS285 insertion element
1786	 32.61	-2	2065799..2066212	-	137	145599109	-	YPDSF_1827	-	hypothetical protein
1787	 39.67	-1	2066220..2066708	-	162	145599110	-	YPDSF_1828	-	hypothetical protein
1788	 39.49	-1	2066962..2067156	-	64	145599111	-	YPDSF_1829	-	hypothetical protein
1789	 48.28	0	2067327..2068631	-	434	145599112	-	YPDSF_1830	-	NADH dehydrogenase
1790	 42.73	-1	2069006..2069548	-	180	145599113	-	YPDSF_1831	-	hypothetical protein
1791	 51.86	0	2069676..2070695	-	339	145599114	-	YPDSF_1832	-	beta-hexosaminidase
1792	 49.83	0	2070778..2071644	-	288	145599115	-	YPDSF_1833	-	hypothetical protein
1793	 51.39	0	2071625..2072200	-	191	145599116	-	YPDSF_1834	-	putative lipoprotein
1794	 49.49	0	2072241..2072630	-	129	145599117	-	YPDSF_1835	-	putative lipoprotein
1795	 49.44	0	2072665..2073018	-	117	145599118	-	YPDSF_1836	-	purine nucleoside phosphoramidase
1796	 47.99	0	2073192..2074010	-	272	145599119	-	YPDSF_1837	-	shikimate 5-dehydrogenase
1797	 45.75	0	2074453..2074911	-	152	145599120	-	YPDSF_1838	-	transposase for the IS1541 insertion element
1798	 48.40	0	2075101..2076534	-	477	145599121	-	YPDSF_1839	-	glucose-specific PTS system IIBC components
1799	 49.63	0	2076840..2077649	-	269	145599122	-	YPDSF_1840	-	putative metallodependent hydrolase
1800	 52.39	0	2077664..2078686	-	340	145599123	-	YPDSF_1841	-	DNA polymerase III subunit delta'
1801	 53.83	+1	2078686..2079324	-	212	145599124	tdk	YPDSF_1842	-	thymidylate kinase
1802	 46.30	0	2079314..2080339	-	341	145599125	-	YPDSF_1843	-	hypothetical protein
1803	 48.82	0	2080608..2081414	-	268	145599126	-	YPDSF_1844	-	4-amino-4-deoxychorismate lyase
1804	 45.97	0	2081830..2082288	-	152	145599127	-	YPDSF_1845	-	transposase for the IS1541 insertion element
1805	 49.28	0	2082488..2083729	-	413	145599128	-	YPDSF_1846	-	3-oxoacyl-(acyl carrier protein) synthase II
1806	 43.46	0	2083824..2084060	-	78	145599129	acpP	YPDSF_1847	-	acyl carrier protein
1807	 48.30	0	2084214..2084948	-	244	145599130	fabG	YPDSF_1848	-	3-ketoacyl-(acyl-carrier-protein) reductase
1808	 51.51	0	2084962..2085891	-	309	145599131	-	YPDSF_1849	-	malonyl CoA-acyl carrier protein transacylase
1809	 50.68	0	2085929..2086879	-	316	145599132	-	YPDSF_1850	-	3-oxoacyl-(acyl carrier protein) synthase III
1810	 52.27	0	2086886..2087920	-	344	145599133	-	YPDSF_1851	-	putative glycerol-3-phosphate acyltransferase PlsX
1811	 55.36	+1	2087954..2088121	-	55	145599134	rpmF	YPDSF_1852	-	50S ribosomal protein L32
1812	 46.10	0	2088134..2088658	-	174	145599135	-	YPDSF_1853	-	hypothetical protein
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.