IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1622	 44.93	0	1865462..1866220	-	252	145598945	-	YPDSF_1663	-	undecaprenyl pyrophosphate synthetase
1623	 46.28	0	1866444..1867640	-	398	145598946	-	YPDSF_1664	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1624	 47.49	0	1867854..1868411	-	185	145598947	frr	YPDSF_1665	-	ribosome recycling factor
1625	 49.31	0	1868547..1869272	-	241	145598948	pyrH	YPDSF_1666	-	uridylate kinase
1626	 47.96	0	1869460..1870539	+	359	145598949	-	YPDSF_1667	-	hypothetical protein
1627	 48.02	0	1869481..1870338	-	285	145598950	tsf	YPDSF_1668	-	elongation factor Ts
1628	 47.80	0	1870466..1871191	-	241	145598951	rpsB	YPDSF_1669	-	30S ribosomal protein S2
1629	 48.86	0	1871626..1872417	+	263	145598952	-	YPDSF_1670	-	methionine aminopeptidase
1630	 49.11	0	1872477..1875158	+	893	145598953	-	YPDSF_1671	-	PII uridylyl-transferase
1631	 49.33	0	1875333..1876157	+	274	145598954	dapD	YPDSF_1672	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1632	 38.97	-1	1876281..1876670	+	129	145598955	-	YPDSF_1673	-	hypothetical protein
1633	 49.56	0	1876760..1877209	-	149	145598956	-	YPDSF_1674	-	flavodoxin
1634	 48.71	0	1877237..1878010	-	257	145598957	-	YPDSF_1675	-	tRNA pseudouridine synthase C
1635	 48.65	0	1878010..1878342	-	110	145598958	-	YPDSF_1676	-	hypothetical protein
1636	 45.97	0	1878596..1879054	-	152	145598959	-	YPDSF_1677	-	transposase for the IS1541 insertion element
1637	 44.75	0	1879744..1880295	-	183	145598960	-	YPDSF_1678	-	SecY interacting protein Syd
1638	 46.69	0	1880427..1881272	+	281	145598961	queF	YPDSF_1679	-	7-cyano-7-deazaguanine reductase
1639	 46.30	0	1881425..1882789	+	454	145598962	-	YPDSF_1680	-	hypothetical protein
1640	 47.75	0	1883049..1883804	+	251	145598963	xni	YPDSF_1681	-	exonuclease IX
1641	 45.98	0	1884055..1885161	-	368	145598964	-	YPDSF_1682	-	putative RNA 2'-O-ribose methyltransferase
1642	 48.23	0	1885154..1885549	-	131	145598965	-	YPDSF_1683	-	hypothetical protein
1643	 49.02	0	1885715..1886632	-	305	145598966	-	YPDSF_1684	-	DNA-binding transcriptional activator GcvA
1644	 46.44	0	1887193..1888497	+	434	145598967	-	YPDSF_1685	-	cysteine sulfinate desulfinase
1645	 52.25	0	1888632..1889075	+	147	145598968	-	YPDSF_1686	-	hypothetical protein
1646	 48.43	0	1889111..1889938	-	275	145598969	-	YPDSF_1687	-	hypothetical protein
1647	 48.17	0	1890081..1891253	-	390	145598970	mltA	YPDSF_1688	-	murein transglycosylase A
1648	 46.60	0	1892175..1893425	-	416	145598971	-	YPDSF_1689	-	N-acetylmuramoyl-L-alanine amidase AmiC precursor
1649	 45.77	0	1893661..1893861	+	66	145598972	-	YPDSF_1690	-	amino-acid acetyltransferase
1650	 52.88	+1	1893943..1894965	+	340	145598973	-	YPDSF_1691	-	transposase
1651	 50.79	0	1894965..1895657	+	230	145598974	-	YPDSF_1692	-	ATPase
1652	 48.11	0	1895696..1896859	+	387	145598975	-	YPDSF_1693	-	N-acetylglutamate synthase
1653	 49.31	0	1897014..1898972	-	652	145598976	RecD	YPDSF_1694	-	exonuclease V subunit alpha
1654	 49.47	0	1898969..1902631	-	1220	145598977	RecB	YPDSF_1695	-	exonuclease V subunit beta
1655	 46.76	0	1902628..1905516	-	962	145598978	-	YPDSF_1696	-	protease III precursor
1656	 47.12	0	1905598..1908969	-	1123	145598979	recC	YPDSF_1697	-	exonuclease V subunit gamma
1657	 48.91	0	1909104..1909469	-	121	145598980	-	YPDSF_1698	-	prepilin peptidase dependent protein
1658	 48.20	0	1909502..1909972	-	156	145598981	-	YPDSF_1699	-	hypothetical protein
1659	 48.60	0	1909969..1910577	-	202	145598982	-	YPDSF_1700	-	hypothetical protein
1660	 46.14	0	1910568..1911137	-	189	145598983	-	YPDSF_1701	-	hypothetical protein
1661	 46.67	0	1911373..1912167	-	264	145598984	thyA	YPDSF_1702	-	thymidylate synthase
1662	 49.37	0	1912174..1913046	-	290	145598985	-	YPDSF_1703	-	prolipoprotein diacylglyceryl transferase
1663	 53.36	+1	1913297..1915543	-	748	145598986	-	YPDSF_1704	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein
1664	 47.73	0	1915556..1916083	-	175	145598987	-	YPDSF_1705	-	dinucleoside polyphosphate hydrolase
1665	 52.98	+1	1916780..1917466	+	228	145598988	-	YPDSF_1706	-	DNA mismatch repair protein
1666	 50.14	0	1917855..1918895	+	346	145598989	-	YPDSF_1707	-	putative aldo-keto reductase
1667	 33.33	-2	1919602..1919835	+	77	145598990	-	YPDSF_1708	-	hypothetical protein
1668	 52.83	0	1919864..1921084	-	406	145598991	-	YPDSF_1709	-	hypothetical protein
1669	 50.95	0	1921081..1923237	-	718	145598992	-	YPDSF_1710	-	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase
1670	 51.95	0	1923686..1925947	-	753	145598993	-	YPDSF_1711	-	biotin sulfoxide reductas2
1671	 52.20	0	1926257..1927279	+	340	145598994	-	YPDSF_1712	-	DNA-binding transcriptional regulator GalR
1672	 50.99	0	1927276..1928538	-	420	145598995	-	YPDSF_1713	-	diaminopimelate decarboxylase
1673	 51.38	0	1928753..1929694	+	313	145598996	-	YPDSF_1714	-	DNA-binding transcriptional regulator LysR
1674	 53.66	+1	1929691..1930851	-	386	145598997	-	YPDSF_1715	-	sugar transport protein
1675	 49.94	0	1931220..1932128	-	302	145598998	-	YPDSF_1716	-	LysR family transcriptional regulator
1676	 44.14	0	1932235..1933122	+	295	145598999	-	YPDSF_1717	-	hypothetical protein
1677	 47.96	0	1933235..1933870	+	211	145599000	-	YPDSF_1718	-	hypothetical protein
1678	 45.09	0	1933856..1935547	-	563	145599001	-	YPDSF_1719	-	methyl-accepting chemotaxis protein
1679	 33.33	-2	1935711..1936427	-	238	145599002	-	YPDSF_1720	-	hypothetical protein
1680	 49.63	0	1936470..1937678	-	402	145599003	-	YPDSF_1721	-	transposase for the IS285 insertion element
1681	 41.60	-1	1937726..1938076	-	116	145599004	-	YPDSF_1722	-	hypothetical protein
1682	 47.19	0	1938412..1939248	+	278	145599005	-	YPDSF_1723	-	5-keto-4-deoxyuronate isomerase
1683	 48.70	0	1939295..1940101	+	268	145599006	-	YPDSF_1724	-	2-deoxy-D-gluconate 3-dehydrogenase
1684	 47.42	0	1940437..1942104	+	555	145599007	-	YPDSF_1725	-	exopolygalacturonate lyase
1685	 42.99	-1	1942145..1943035	+	296	145599008	-	YPDSF_1726	-	ABC sugar transporter (permease)
1686	 45.39	0	1943028..1943948	+	306	145599009	-	YPDSF_1727	-	sugar ABC transporter (permease)
1687	 45.74	0	1943962..1945089	+	375	145599010	-	YPDSF_1728	-	sugar ABC transporter
1688	 41.07	-1	1945105..1946397	+	430	145599011	-	YPDSF_1729	-	sugar-binding protein
1689	 40.79	-1	1946695..1947405	+	236	145599012	-	YPDSF_1730	-	hypothetical protein
1690	 48.09	0	1947975..1948523	+	182	145599013	-	YPDSF_1731	-	hypothetical protein
1691	 47.20	0	1948727..1950118	+	463	145599014	-	YPDSF_1732	-	transport protein
1692	 48.24	0	1950333..1951184	-	283	145599015	-	YPDSF_1733	-	N-acetylmuramoyl-L-alanine amidase
1693	 44.19	0	1951569..1952360	-	263	145599016	-	YPDSF_1734	-	IclR family transcriptional regulator
1694	 45.93	0	1952547..1953713	-	388	145599017	-	YPDSF_1735	-	oligogalacturonate lyase
1695	 51.24	0	1954040..1955407	+	455	145599018	-	YPDSF_1736	-	transport protein
1696	 48.26	0	1955461..1956264	-	267	145599019	-	YPDSF_1737	-	chaperone protein
1697	 46.13	0	1956261..1957424	-	387	145599020	-	YPDSF_1738	-	fimbrial protein
1698	 49.37	0	1957421..1960033	-	870	145599021	-	YPDSF_1739	-	outer membrane usher protein
1699	 44.10	0	1960115..1960894	-	259	145599022	-	YPDSF_1740	-	chaperone protein
1700	 42.54	-1	1961047..1961589	-	180	145599023	-	YPDSF_1741	-	fimbrial protein
1701	 47.05	0	1962247..1963128	-	293	145599024	-	YPDSF_1742	-	heat shock protein HtpX
1702	 47.23	0	1963583..1965655	-	690	145599025	-	YPDSF_1743	-	carboxy-terminal protease
1703	 52.80	0	1965675..1966388	-	237	145599026	-	YPDSF_1744	-	putative solute/DNA competence effector
1704	 45.18	0	1966484..1966981	-	165	145599027	-	YPDSF_1745	-	hypothetical protein
1705	 49.96	0	1967108..1968460	+	450	145599028	-	YPDSF_1746	-	hypothetical protein
1706	 49.74	0	1968429..1971080	+	883	145599029	-	YPDSF_1747	-	hypothetical protein
1707	 46.67	0	1971560..1972114	+	184	145599030	-	YPDSF_1748	-	hypothetical protein
1708	 49.72	0	1972120..1972650	+	176	145599031	-	YPDSF_1749	-	hypothetical protein
1709	 46.77	0	1972671..1973228	+	185	145599032	-	YPDSF_1750	-	hypothetical protein
1710	 44.62	0	1973259..1974011	+	250	145599033	-	YPDSF_1751	-	chaperone protein
1711	 46.12	0	1974199..1976646	+	815	145599034	-	YPDSF_1752	-	outer membrane usher protein
1712	 42.22	-1	1976852..1977841	+	329	145599035	-	YPDSF_1753	-	hypothetical protein
1713	 40.83	-1	1978049..1978288	+	79	145599036	-	YPDSF_1754	-	hypothetical protein
1714	 47.95	0	1978398..1978787	-	129	145599037	-	YPDSF_1755	-	hypothetical protein
1715	 45.24	0	1979055..1979180	+	41	145599038	-	YPDSF_1756	-	hypothetical protein
1716	 52.79	0	1979194..1980216	+	340	145599039	-	YPDSF_1757	-	transposase for insertion sequence IS100
1717	 50.38	0	1980216..1980995	+	259	145599040	-	YPDSF_1758	-	transposase/IS protein
1718	 48.13	0	1981946..1983202	-	418	145599041	-	YPDSF_1759	-	lipoprotein
1719	 43.78	0	1983595..1983843	-	82	145599042	-	YPDSF_1760	-	hypothetical protein
1720	 45.04	0	1984990..1986219	+	409	145599043	-	YPDSF_1761	-	alanine racemase
1721	 41.61	-1	1986838..1987791	-	317	145599044	-	YPDSF_1762	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.