IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1206	 54.64	+1	1407435..1408232	-	265	145598529	-	YPDSF_1236	-	GntR family putative transcriptional regulatory protein
1207	 38.89	-1	1408249..1408410	+	53	145598530	-	YPDSF_1237	-	hypothetical protein
1208	 40.58	-1	1408577..1408783	-	68	145598531	-	YPDSF_1239	-	hypothetical protein
1209	 35.63	-2	1409201..1409635	+	144	145598532	-	YPDSF_1240	-	hypothetical protein
1210	 34.39	-2	1409647..1410216	+	189	145598533	-	YPDSF_1241	-	hypothetical protein
1211	 47.49	0	1410634..1410972	-	112	145598534	-	YPDSF_1242	-	transposase
1212	 49.25	0	1410972..1411832	-	286	145598535	-	YPDSF_1243	-	hypothetical protein
1213	 36.86	-2	1411880..1412956	-	358	145598536	-	YPDSF_1244	-	hypothetical protein
1214	 51.55	0	1413022..1413312	-	96	145598537	-	YPDSF_1245	-	hypothetical protein
1215	 44.69	0	1413293..1413565	-	90	145598538	-	YPDSF_1246	-	hypothetical protein
1216	 52.55	0	1413696..1413950	+	84	145598539	-	YPDSF_1247	-	hypothetical protein
1217	 51.33	0	1413947..1414246	+	99	145598540	-	YPDSF_1248	-	hypothetical protein
1218	 53.47	+1	1414263..1414550	+	95	145598541	-	YPDSF_1249	-	hypothetical protein
1219	 47.22	0	1414985..1415200	+	71	145598542	-	YPDSF_1250	-	membrane protein
1220	 45.42	0	1415197..1415502	+	101	145598543	-	YPDSF_1251	-	hypothetical protein
1221	 53.10	+1	1416177..1416596	+	139	145598544	-	YPDSF_1253	-	hypothetical protein
1222	 57.08	+1	1416668..1417627	+	319	145598545	-	YPDSF_1254	-	transposase
1223	 30.43	-2	1417847..1418191	+	114	145598546	-	YPDSF_1255	-	hypothetical protein
1224	 35.06	-2	1418773..1418946	-	57	145598547	-	YPDSF_1256	-	hypothetical protein
1225	 45.34	0	1420002..1420559	+	185	145598548	-	YPDSF_1258	-	hypothetical protein
1226	 46.08	0	1421299..1421847	-	182	145598549	-	YPDSF_1259	-	phosphatidylglycerophosphate synthetase
1227	 44.77	0	1421906..1423759	-	617	145598550	uvrC	YPDSF_1260	-	excinuclease ABC subunit C
1228	 45.51	0	1423731..1424387	-	218	145598551	-	YPDSF_1261	-	response regulator
1229	 43.56	0	1425050..1425274	+	74	145598552	-	YPDSF_1262	-	hypothetical protein
1230	 39.13	-1	1425399..1425743	+	114	145598553	-	YPDSF_1263	-	membrane protein
1231	 39.22	-1	1425771..1426025	-	84	145598554	-	YPDSF_1264	-	hypothetical protein
1232	 37.68	-2	1426365..1426916	-	183	145598555	-	YPDSF_1265	-	attachment invasion locus protein
1233	 46.60	0	1428031..1429455	+	474	145598556	-	YPDSF_1266	-	D-alanine/D-serine/glycine permease
1234	 50.72	0	1429581..1430759	-	392	145598557	-	YPDSF_1267	-	hypothetical protein
1235	 51.50	0	1431153..1431752	+	199	145598558	-	YPDSF_1268	-	TrpR binding protein WrbA
1236	 49.04	0	1431838..1433142	-	434	145598559	-	YPDSF_1269	-	hypothetical protein
1237	 46.95	0	1433153..1434283	-	376	145598560	-	YPDSF_1270	-	hypothetical protein
1238	 49.23	0	1434313..1435161	-	282	145598561	-	YPDSF_1271	-	membrane protein
1239	 48.82	0	1435494..1436978	-	494	145598562	-	YPDSF_1272	-	proline permease
1240	 40.91	-1	1437008..1437205	-	65	145598563	-	YPDSF_1273	-	hypothetical protein
1241	 52.79	0	1437550..1441521	+	1323	145598564	putA	YPDSF_1274	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1242	 43.45	0	1441985..1442320	+	111	145598565	-	YPDSF_1275	-	hypothetical protein
1243	 44.62	0	1442320..1442691	+	123	145598566	-	YPDSF_1276	-	hypothetical protein
1244	 49.48	0	1442983..1443744	-	253	145598567	-	YPDSF_1277	-	putative amino-acid ABC transporter ATP-binding protein YecC
1245	 49.62	0	1443747..1444409	-	220	145598568	-	YPDSF_1278	-	amino-acid ABC transporter (permease)
1246	 51.26	0	1445328..1446320	-	330	145598569	-	YPDSF_1281	-	D-cysteine desulfhydrase
1247	 41.96	-1	1446609..1447118	-	169	145598570	-	YPDSF_1282	-	protein FliZ
1248	 52.97	+1	1447340..1448062	-	240	145598571	fliA	YPDSF_1283	-	flagellar biosynthesis sigma factor
1249	 46.85	0	1448409..1449518	-	369	145598572	-	YPDSF_1284	-	flagellin
1250	 46.54	0	1449815..1451215	+	466	145598573	fliD	YPDSF_1285	-	flagellar capping protein
1251	 46.62	0	1451226..1451624	+	132	145598574	fliS	YPDSF_1286	-	flagellar protein FliS
1252	 41.05	-1	1451635..1451997	+	120	145598575	-	YPDSF_1287	-	flagellar biosynthesis protein FliT
1253	 43.38	0	1452298..1453173	+	291	145598576	-	YPDSF_1288	-	AraC family transcription regulator
1254	 43.01	-1	1453527..1456481	+	984	145598577	-	YPDSF_1289	-	hypothetical protein
1255	 49.18	0	1456642..1457253	+	203	145598578	-	YPDSF_1290	-	glycosidase
1256	 41.93	-1	1457439..1457915	-	158	145598579	-	YPDSF_1291	-	hypothetical protein
1257	 43.33	0	1457926..1458105	-	59	145598580	-	YPDSF_1292	-	hypothetical protein
1258	 49.68	0	1458525..1458836	-	103	145598581	fliE	YPDSF_1293	-	flagellar hook-basal body protein FliE
1259	 53.30	+1	1459189..1460901	+	570	145598582	fliF	YPDSF_1294	-	flagellar MS-ring protein
1260	 52.17	0	1460898..1461890	+	330	145598583	fliG	YPDSF_1295	-	flagellar motor switch protein G
1261	 54.76	+1	1461965..1462594	+	209	145598584	fliH	YPDSF_1296	-	flagellar assembly protein H
1262	 55.22	+1	1462491..1463993	+	500	145598585	fliI	YPDSF_1297	-	flagellum-specific ATP synthase
1263	 47.87	0	1464093..1464539	+	148	145598586	fliJ	YPDSF_1298	-	flagellar biosynthesis chaperone
1264	 55.28	+1	1464536..1465888	+	450	145598587	-	YPDSF_1299	-	flagellar hook-length control protein FliK
1265	 48.40	0	1466062..1466625	+	187	145598588	fliL	YPDSF_1300	-	flagellar basal body-associated protein FliL
1266	 50.50	0	1466631..1467632	+	333	145598589	fliM	YPDSF_1301	-	flagellar motor switch protein FliM
1267	 49.64	0	1467629..1468045	+	138	145598590	fliN	YPDSF_1302	-	flagellar motor switch protein FliN
1268	 57.73	+2	1468045..1468581	+	178	145598591	-	YPDSF_1303	-	flagellar protein FliO
1269	 51.39	0	1468578..1469402	+	274	145598592	fliP	YPDSF_1304	-	flagellar biosynthesis protein FliP
1270	 52.22	0	1469508..1469777	+	89	145598593	fliQ	YPDSF_1305	-	flagellar biosynthesis protein FliQ
1271	 49.71	0	1469708..1470562	+	284	145598594	fliR	YPDSF_1306	-	flagellar biosynthesis protein FliR
1272	 45.00	0	1470996..1471415	+	139	145598595	-	YPDSF_1307	-	hypothetical protein
1273	 52.29	0	1471673..1472632	-	319	145598596	-	YPDSF_1308	-	sugar kinase
1274	 51.42	0	1472681..1473703	-	340	145598597	-	YPDSF_1309	-	sugar ABC transporter, permease
1275	 51.08	0	1473706..1475283	-	525	145598598	-	YPDSF_1310	-	sugar ABC transporter, ATP-binding protein
1276	 50.70	0	1475349..1476344	-	331	145598599	-	YPDSF_1311	-	sugar-binding periplasmic protein
1277	 50.37	0	1476387..1477466	-	359	145598600	-	YPDSF_1312	-	sugar transport system permease protein
1278	 52.01	0	1477596..1479662	-	688	145598601	-	YPDSF_1313	-	short chain dehydrogenase
1279	 50.41	0	1479904..1480881	+	325	145598602	-	YPDSF_1314	-	transcriptional regulatory protein
1280	 47.63	0	1480910..1481923	-	337	145598603	flgL	YPDSF_1315	-	flagellar hook-associated protein FlgL
1281	 50.09	0	1482029..1483693	-	554	145598604	flgK	YPDSF_1316	-	flagellar hook-associated protein FlgK
1282	 54.07	+1	1483992..1484936	-	314	145598605	flgJ	YPDSF_1317	-	peptidoglycan hydrolase
1283	 54.59	+1	1484936..1486045	-	369	145598606	flgI	YPDSF_1318	-	flagellar basal body P-ring protein
1284	 52.17	0	1486060..1486749	-	229	145598607	flgH	YPDSF_1319	-	flagellar basal body L-ring protein
1285	 51.65	0	1486893..1487591	-	232	145598608	-	YPDSF_1320	-	flagellar basal-body rod protein FlgG
1286	 57.94	+2	1487572..1488201	-	209	145598609	flgF	YPDSF_1321	-	flagellar basal body rod protein FlgF
1287	 50.82	0	1488223..1489509	-	428	145598610	flgE	YPDSF_1322	-	flagellar hook protein FlgE
1288	 52.95	+1	1489711..1490388	-	225	145598611	flgD	YPDSF_1323	-	flagellar basal body rod modification protein
1289	 54.07	+1	1490403..1490807	-	134	145598612	flgC	YPDSF_1324	-	flagellar basal body rod protein FlgC
1290	 50.24	0	1490813..1491226	-	137	145598613	flgB	YPDSF_1325	-	flagellar basal body rod protein FlgB
1291	 51.85	0	1491408..1492163	+	251	145598614	flgA	YPDSF_1326	-	flagellar basal body P-ring biosynthesis protein FlgA
1292	 47.52	0	1492314..1492616	+	100	145598615	-	YPDSF_1327	-	anti-sigma28 factor FlgM
1293	 48.75	0	1492635..1493075	+	146	145598616	-	YPDSF_1328	-	flagella synthesis protein FlgN
1294	 50.17	0	1493265..1495337	-	690	145598617	-	YPDSF_1329	-	hypothetical protein
1295	 45.75	0	1495427..1495885	-	152	145598618	-	YPDSF_1330	-	transposase for the IS1541 insertion element
1296	 43.98	0	1495875..1496879	-	334	145598619	-	YPDSF_1331	-	invasin
1297	 52.96	+1	1497543..1497965	-	140	145598620	-	YPDSF_1332	-	flagellar protein FlhE precursor
1298	 51.80	0	1497965..1500043	-	692	145598621	flhA	YPDSF_1333	-	flagellar biosynthesis protein FlhA
1299	 52.54	0	1500043..1501203	-	386	145598622	flhB	YPDSF_1334	-	flagellar biosynthesis protein FlhB
1300	 46.84	0	1501735..1502193	+	152	145598623	-	YPDSF_1335	-	membrane protein
1301	 38.53	-1	1502187..1502513	+	108	145598624	-	YPDSF_1336	-	acyl carrier protein
1302	 44.44	0	1503036..1503377	-	113	145598625	-	YPDSF_1337	-	hypothetical protein
1303	 49.04	0	1503474..1504358	-	294	145598626	-	YPDSF_1338	-	copper resistance protein D
1304	 46.77	0	1504361..1504747	-	128	145598627	-	YPDSF_1339	-	copper resistance protein
1305	 39.80	-1	1505153..1505662	-	169	145598628	-	YPDSF_1340	-	ferritin
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.