IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1171	 48.59	0	1357202..1357732	+	176	145598494	-	YPDSF_1201	-	fimbrial protein
1172	 42.48	-1	1357825..1358469	+	214	145598495	-	YPDSF_1202	-	pili assembly chaperone
1173	 49.50	0	1358518..1361109	+	863	145598496	-	YPDSF_1203	-	fimbrial usher protein
1174	 47.63	0	1361125..1362474	+	449	145598497	-	YPDSF_1204	-	hypothetical protein
1175	 44.64	0	1362471..1362983	+	170	145598498	-	YPDSF_1205	-	pili assembly chaperone
1176	 49.55	0	1363045..1364253	+	402	145598499	-	YPDSF_1206	-	transposase for the IS285 insertion element
1177	 43.02	-1	1364277..1364534	+	85	145598500	-	YPDSF_1207	-	pili assembly chaperone
1178	 52.65	0	1365074..1366336	+	420	145598501	-	YPDSF_1208	-	integrase
1179	 55.25	+1	1366530..1367834	-	434	145598502	-	YPDSF_1209	-	salicylate synthase Irp9
1180	 59.83	+2	1367862..1369250	-	462	145598503	-	YPDSF_1210	-	signal transducer
1181	 58.62	+2	1369135..1370937	-	600	145598504	-	YPDSF_1211	-	inner membrane ABC-transporter YbtQ
1182	 57.85	+2	1370924..1372636	-	570	145598505	-	YPDSF_1212	-	lipoprotein inner membrane ABC-transporter
1183	 56.35	+1	1372893..1373852	+	319	145598506	-	YPDSF_1213	-	transcriptional regulator YbtA
1184	 60.15	+2	1374043..1380150	+	2035	145598507	-	YPDSF_1214	-	yersiniabactin biosynthetic protein
1185	 60.78	+2	1380238..1389729	+	3163	145598508	-	YPDSF_1215	-	yersiniabactin biosynthetic protein
1186	 60.40	+2	1389726..1390826	+	366	145598509	-	YPDSF_1216	-	yersiniabactin biosynthetic protein YbtU
1187	 58.43	+2	1390838..1391626	+	262	145598510	-	YPDSF_1217	-	yersiniabactin biosynthetic protein YbtT
1188	 58.81	+2	1391630..1393207	+	525	145598511	-	YPDSF_1218	-	yersiniabactin siderophore biosynthetic protein
1189	 56.53	+1	1393338..1395359	+	673	145598512	-	YPDSF_1219	-	pesticin/yersiniabactin receptor protein
1190	 41.44	-1	1396605..1397159	+	184