IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1147	 46.70	0	1324875..1325405	-	176	145598470	-	YPDSF_1175	-	thioredoxin
1148	 47.34	0	1325362..1326075	-	237	145598471	-	YPDSF_1176	-	ABC transporter, ATP-binding protein
1149	 49.23	0	1326079..1327242	-	387	145598472	-	YPDSF_1177	-	membrane protein
1150	 52.90	+1	1327232..1328524	-	430	145598473	-	YPDSF_1178	-	membrane protein
1151	 49.08	0	1328527..1329936	-	469	145598474	-	YPDSF_1179	-	membrane protein
1152	 45.45	0	1330221..1330748	-	175	145598475	-	YPDSF_1180	-	hypothetical protein
1153	 52.10	0	1333442..1335082	-	546	145598476	-	YPDSF_1183	-	membrane protein
1154	 49.80	0	1335193..1336200	-	335	145598477	-	YPDSF_1184	-	glutaminase
1155	 46.86	0	1336652..1336858	-	68	145598478	-	YPDSF_1185	-	hydroxypyruvate isomerase
1156	 50.06	0	1337411..1338181	+	256	145598479	-	YPDSF_1186	-	DeoR family transcriptional regulator
1157	 48.04	0	1338903..1340432	+	509	145598480	-	YPDSF_1187	-	L-asparagine permease
1158	 47.29	0	1340628..1341788	-	386	145598481	-	YPDSF_1188	-	aminotransferase
1159	 41.17	-1	1342140..1342739	+	199	145598482	-	YPDSF_1189	-	Na(+)-translocating NADH-quinone reductase subunit E
1160	 50.57	0	1343044..1344006	-	320	145598483	-	YPDSF_1190	-	LysR family transcriptional regulator
1161	 50.11	0	1344118..1344987	+	289	145598484	-	YPDSF_1191	-	dicarboxylic acid hydrolase
1162	 50.73	0	1345053..1346282	+	409	145598485	-	YPDSF_1192	-	sugar transporter
1163	 38.50	-1	1346502..1347062	+	186	145598486	-	YPDSF_1193	-	hypothetical protein
1164	 41.35	-1	1347087..1347560	+	157	145598487	-	YPDSF_1194	-	lipoprotein
1165	 50.96	0	1347635..1348519	-	294	145598488	-	YPDSF_1195	-	LysR family transcriptional regulator
1166	 53.62	+1	1348608..1349450	+	280	145598489	-	YPDSF_1196	-	citrate lyase beta chain
1167	 51.52	0	1349515..1350042	+	175	145598490	-	YPDSF_1197	-	transcription regulatory protein
1168	 50.42	0	1350065..1351387	+	440	145598491	-	YPDSF_1198	-	4-hydroxybutyrate coenzyme A transferase
1169	 40.13	-1	1352213..1352845	+	210	145598492	-	YPDSF_1199	-	two-component response regulator
1170	 46.78	0	1352820..1356821	+	1333	145598493	-	YPDSF_1200	-	signal transduction histidine kinase
1171	 48.59	0	1357202..1357732	+	176	145598494	-	YPDSF_1201	-	fimbrial protein
1172	 42.48	-1	1357825..1358469	+	214	145598495	-	YPDSF_1202	-	pili assembly chaperone
1173	 49.50	0	1358518..1361109	+	863	145598496	-	YPDSF_1203	-	fimbrial usher protein
1174	 47.63	0	1361125..1362474	+	449	145598497	-	YPDSF_1204	-	hypothetical protein
1175	 44.64	0	1362471..1362983	+	170	145598498	-	YPDSF_1205	-	pili assembly chaperone
1176	 49.55	0	1363045..1364253	+	402	145598499	-	YPDSF_1206	-	transposase for the IS285 insertion element
1177	 43.02	-1	1364277..1364534	+	85	145598500	-	YPDSF_1207	-	pili assembly chaperone
1178	 52.65	0	1365074..1366336	+	420	145598501	-	YPDSF_1208	-	integrase
1179	 55.25	+1	1366530..1367834	-	434	145598502	-	YPDSF_1209	-	salicylate synthase Irp9
1180	 59.83	+2	1367862..1369250	-	462	145598503	-	YPDSF_1210	-	signal transducer
1181	 58.62	+2	1369135..1370937	-	600	145598504	-	YPDSF_1211	-	inner membrane ABC-transporter YbtQ
1182	 57.85	+2	1370924..1372636	-	570	145598505	-	YPDSF_1212	-	lipoprotein inner membrane ABC-transporter
1183	 56.35	+1	1372893..1373852	+	319	145598506	-	YPDSF_1213	-	transcriptional regulator YbtA
1184	 60.15	+2	1374043..1380150	+	2035	145598507	-	YPDSF_1214	-	yersiniabactin biosynthetic protein
1185	 60.78	+2	1380238..1389729	+	3163	145598508	-	YPDSF_1215	-	yersiniabactin biosynthetic protein
1186	 60.40	+2	1389726..1390826	+	366	145598509	-	YPDSF_1216	-	yersiniabactin biosynthetic protein YbtU
1187	 58.43	+2	1390838..1391626	+	262	145598510	-	YPDSF_1217	-	yersiniabactin biosynthetic protein YbtT
1188	 58.81	+2	1391630..1393207	+	525	145598511	-	YPDSF_1218	-	yersiniabactin siderophore biosynthetic protein
1189	 56.53	+1	1393338..1395359	+	673	145598512	-	YPDSF_1219	-	pesticin/yersiniabactin receptor protein
1190	 41.44	-1	1396605..1397159	+	184	145598513	-	YPDSF_1220	-	hypothetical protein
1191	 43.01	-1	1397299..1397484	+	61	145598514	-	YPDSF_1221	-	transcriptional regulator
1192	 37.58	-2	1397503..1397667	+	54	145598515	-	YPDSF_1222	-	hypothetical protein
1193	 48.97	0	1397673..1398254	+	193	145598516	-	YPDSF_1223	-	hypothetical protein
1194	 51.90	0	1398244..1398453	+	69	145598517	-	YPDSF_1224	-	hypothetical protein
1195	 44.74	0	1398696..1398809	+	37	145598518	-	YPDSF_1225	-	hypothetical protein
1196	 50.38	0	1398853..1399632	-	259	145598519	-	YPDSF_1226	-	transposase/IS protein
1197	 52.79	0	1399632..1400654	-	340	145598520	-	YPDSF_1227	-	transposase
1198	 41.94	-1	1401132..1401317	+	61	145598521	-	YPDSF_1228	-	hypothetical protein
1199	 47.11	0	1401333..1401557	+	74	145598522	-	YPDSF_1229	-	hypothetical protein
1200	 52.34	0	1401567..1401908	-	113	145598523	-	YPDSF_1230	-	ABC-type sugar transport system, ATPase components
1201	 50.73	0	1401794..1402684	-	296	145598524	-	YPDSF_1231	-	binding-protein-dependent transport system, ATP-binding component
1202	 51.21	0	1402709..1403536	-	275	145598525	-	YPDSF_1232	-	binding-protein-dependent transport system, inner membrane component
1203	 52.03	0	1403529..1404389	-	286	145598526	-	YPDSF_1233	-	binding-protein-dependent transport system, inner membrane component
1204	 51.85	0	1404456..1405724	-	422	145598527	-	YPDSF_1234	-	exported solute-binding protein
1205	 54.44	+1	1405754..1406767	-	337	145598528	-	YPDSF_1235	-	oxidoreductase
1206	 54.64	+1	1407435..1408232	-	265	145598529	-	YPDSF_1236	-	GntR family putative transcriptional regulatory protein
1207	 38.89	-1	1408249..1408410	+	53	145598530	-	YPDSF_1237	-	hypothetical protein
1208	 40.58	-1	1408577..1408783	-	68	145598531	-	YPDSF_1239	-	hypothetical protein
1209	 35.63	-2	1409201..1409635	+	144	145598532	-	YPDSF_1240	-	hypothetical protein
1210	 34.39	-2	1409647..1410216	+	189	145598533	-	YPDSF_1241	-	hypothetical protein
1211	 47.49	0	1410634..1410972	-	112	145598534	-	YPDSF_1242	-	transposase
1212	 49.25	0	1410972..1411832	-	286	145598535	-	YPDSF_1243	-	hypothetical protein
1213	 36.86	-2	1411880..1412956	-	358	145598536	-	YPDSF_1244	-	hypothetical protein
1214	 51.55	0	1413022..1413312	-	96	145598537	-	YPDSF_1245	-	hypothetical protein
1215	 44.69	0	1413293..1413565	-	90	145598538	-	YPDSF_1246	-	hypothetical protein
1216	 52.55	0	1413696..1413950	+	84	145598539	-	YPDSF_1247	-	hypothetical protein
1217	 51.33	0	1413947..1414246	+	99	145598540	-	YPDSF_1248	-	hypothetical protein
1218	 53.47	+1	1414263..1414550	+	95	145598541	-	YPDSF_1249	-	hypothetical protein
1219	 47.22	0	1414985..1415200	+	71	145598542	-	YPDSF_1250	-	membrane protein
1220	 45.42	0	1415197..1415502	+	101	145598543	-	YPDSF_1251	-	hypothetical protein
1221	 53.10	+1	1416177..1416596	+	139	145598544	-	YPDSF_1253	-	hypothetical protein
1222	 57.08	+1	1416668..1417627	+	319	145598545	-	YPDSF_1254	-	transposase
1223	 30.43	-2	1417847..1418191	+	114	145598546	-	YPDSF_1255	-	hypothetical protein
1224	 35.06	-2	1418773..1418946	-	57	145598547	-	YPDSF_1256	-	hypothetical protein
1225	 45.34	0	1420002..1420559	+	185	145598548	-	YPDSF_1258	-	hypothetical protein
1226	 46.08	0	1421299..1421847	-	182	145598549	-	YPDSF_1259	-	phosphatidylglycerophosphate synthetase
1227	 44.77	0	1421906..1423759	-	617	145598550	uvrC	YPDSF_1260	-	excinuclease ABC subunit C
1228	 45.51	0	1423731..1424387	-	218	145598551	-	YPDSF_1261	-	response regulator
1229	 43.56	0	1425050..1425274	+	74	145598552	-	YPDSF_1262	-	hypothetical protein
1230	 39.13	-1	1425399..1425743	+	114	145598553	-	YPDSF_1263	-	membrane protein
1231	 39.22	-1	1425771..1426025	-	84	145598554	-	YPDSF_1264	-	hypothetical protein
1232	 37.68	-2	1426365..1426916	-	183	145598555	-	YPDSF_1265	-	attachment invasion locus protein
1233	 46.60	0	1428031..1429455	+	474	145598556	-	YPDSF_1266	-	D-alanine/D-serine/glycine permease
1234	 50.72	0	1429581..1430759	-	392	145598557	-	YPDSF_1267	-	hypothetical protein
1235	 51.50	0	1431153..1431752	+	199	145598558	-	YPDSF_1268	-	TrpR binding protein WrbA
1236	 49.04	0	1431838..1433142	-	434	145598559	-	YPDSF_1269	-	hypothetical protein
1237	 46.95	0	1433153..1434283	-	376	145598560	-	YPDSF_1270	-	hypothetical protein
1238	 49.23	0	1434313..1435161	-	282	145598561	-	YPDSF_1271	-	membrane protein
1239	 48.82	0	1435494..1436978	-	494	145598562	-	YPDSF_1272	-	proline permease
1240	 40.91	-1	1437008..1437205	-	65	145598563	-	YPDSF_1273	-	hypothetical protein
1241	 52.79	0	1437550..1441521	+	1323	145598564	putA	YPDSF_1274	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1242	 43.45	0	1441985..1442320	+	111	145598565	-	YPDSF_1275	-	hypothetical protein
1243	 44.62	0	1442320..1442691	+	123	145598566	-	YPDSF_1276	-	hypothetical protein
1244	 49.48	0	1442983..1443744	-	253	145598567	-	YPDSF_1277	-	putative amino-acid ABC transporter ATP-binding protein YecC
1245	 49.62	0	1443747..1444409	-	220	145598568	-	YPDSF_1278	-	amino-acid ABC transporter (permease)
1246	 51.26	0	1445328..1446320	-	330	145598569	-	YPDSF_1281	-	D-cysteine desulfhydrase
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.