IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1093	 50.38	0	1258396..1259175	+	259	145598416	-	YPDSF_1121	-	transposase/IS protein
1094	 51.73	0	1259214..1259675	+	153	145598417	-	YPDSF_1122	-	transcriptional activator
1095	 51.80	0	1259687..1261072	+	461	145598418	-	YPDSF_1123	-	two-component system sensor protein
1096	 50.83	0	1261349..1261771	+	140	145598419	-	YPDSF_1124	-	decarboxylase
1097	 53.93	+1	1261826..1262296	+	156	145598420	-	YPDSF_1125	-	hypothetical protein
1098	 48.51	0	1262509..1263582	+	357	145598421	-	YPDSF_1126	-	hypothetical protein
1099	 40.29	-1	1264373..1265278	+	301	145598422	-	YPDSF_1127	-	hypothetical protein
1100	 40.62	-1	1265284..1266216	+	310	145598423	-	YPDSF_1128	-	hypothetical protein
1101	 37.12	-2	1266203..1267153	+	316	145598424	-	YPDSF_1129	-	hypothetical protein
1102	 40.38	-1	1267494..1268174	+	226	145598425	-	YPDSF_1130	-	dehydrogenase
1103	 44.39	0	1268279..1268938	+	219	145598426	-	YPDSF_1131	-	hypothetical protein
1104	 45.70	0	1269073..1269711	-	212	145598427	-	YPDSF_1132	-	hypothetical protein
1105	 49.29	0	1269958..1272069	-	703	145598428	-	YPDSF_1133	-	hypothetical protein
1106	 38.23	-2	1272647..1274809	+	720	145598429	-	YPDSF_1134	-	hypothetical protein
1107	 49.55	0	1274855..1276063	-	402	145598430	-	YPDSF_1135	-	transposase for the IS285 insertion element
1108	 38.86	-1	1276196..1277914	+	572	145598431	-	YPDSF_1136	-	hypothetical protein
1109	 39.57	-1	1278084..1278548	+	154	145598432	-	YPDSF_1137	-	hypothetical protein
1110	 50.59	0	1278709..1279896	-	395	145598433	-	YPDSF_1138	-	glycosyl transferase
1111	 46.84	0	1279893..1280477	-	194	145598434	-	YPDSF_1139	-	hypothetical protein
1112	 48.14	0	1280474..1281628	-	384	145598435	-	YPDSF_1140	-	glycosyl transferase
1113	 49.78	0	1281628..1282539	-	303	145598436	-	YPDSF_1141	-	dehydrogenase
1114	 52.06	0	1282724..1284010	-	428	145598437	-	YPDSF_1142	-	coenzyme synthetase
1115	 53.53	+1	1284007..1284813	-	268	145598438	-	YPDSF_1143	-	hypothetical protein
1116	 53.88	+1	1284806..1285822	-	338	145598439	-	YPDSF_1144	-	dehydrogenase
1117	 52.17	0	1285836..1286366	-	176	145598440	-	YPDSF_1145	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1118	 49.80	0	1286335..1286844	-	169	145598441	-	YPDSF_1146	-	hypothetical protein
1119	 46.42	0	1287877..1289481	+	534	145598442	-	YPDSF_1147	-	hypothetical protein
1120	 51.83	0	1289659..1290231	-	190	145598443	-	YPDSF_1148	-	hypothetical protein
1121	 49.53	0	1290231..1291601	-	456	145598444	-	YPDSF_1149	-	N-formimino-L-glutamate deiminase
1122	 50.91	0	1291749..1292516	+	255	145598445	-	YPDSF_1150	-	GntR family transcriptional regulatory protein
1123	 50.29	0	1292720..1293940	+	406	145598446	-	YPDSF_1151	-	imidazolonepropionase
1124	 52.79	0	1294031..1295053	+	340	145598447	-	YPDSF_1152	-	transposase
1125	 50.38	0	1295053..1295832	+	259	145598448	-	YPDSF_1153	-	transposase/IS protein
1126	 48.89	0	1295848..1296702	+	284	145598449	-	YPDSF_1154	-	N-formylglutamate amidohydrolase
1127	 49.55	0	1296763..1297971	-	402	145598450	-	YPDSF_1155	-	transposase for the IS285 insertion element
1128	 44.51	0	1298434..1299516	-	360	145598451	-	YPDSF_1156	-	hypothetical protein
1129	 48.04	0	1300252..1301244	-	330	145598452	-	YPDSF_1157	-	succinylglutamate desuccinylase
1130	 50.45	0	1301305..1302648	-	447	145598453	-	YPDSF_1158	-	succinylarginine dihydrolase
1131	 53.56	+1	1302672..1304189	-	505	145598454	-	YPDSF_1159	-	succinylglutamic semialdehyde dehydrogenase
1132	 50.71	0	1304186..1305238	-	350	145598455	-	YPDSF_1160	-	arginine succinyltransferase
1133	 51.23	0	1305268..1306608	-	446	145598456	-	YPDSF_1161	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1134	 51.41	0	1307149..1308570	-	473	145598457	-	YPDSF_1162	-	GntR family regulatory protein
1135	 46.91	0	1308880..1310661	+	593	145598458	-	YPDSF_1163	-	nitrate/nitrite sensor protein NarX
1136	 49.47	0	1311346..1312287	+	313	145598459	-	YPDSF_1164	-	calcium/sodium:proton antiporter
1137	 48.67	0	1312390..1313178	-	262	145598460	-	YPDSF_1165	-	hypothetical protein
1138	 43.16	-1	1313238..1313522	-	94	145598461	-	YPDSF_1166	-	hypothetical protein
1139	 44.73	0	1313955..1314665	-	236	145598462	-	YPDSF_1167	-	acetyltransferase
1140	 50.00	0	1315187..1315654	-	155	145598463	-	YPDSF_1168	-	haemin storage system, HmsS protein
1141	 50.95	0	1315651..1317024	-	457	145598464	-	YPDSF_1169	-	N-glycosyltransferase PgaC
1142	 47.48	0	1316975..1318996	-	673	145598465	-	YPDSF_1170	-	haemin storage system, HmsF protein
1143	 48.12	0	1319009..1321477	-	822	145598466	-	YPDSF_1171	-	outer membrane protein PgaA
1144	 45.57	0	1322146..1323363	-	405	145598467	-	YPDSF_1172	-	peptidase
1145	 45.05	0	1323504..1324391	-	295	145598468	-	YPDSF_1173	-	tellurite resistance protein TehB
1146	 45.71	0	1324564..1324878	-	104	145598469	-	YPDSF_1174	-	cytochrome
1147	 46.70	0	1324875..1325405	-	176	145598470	-	YPDSF_1175	-	thioredoxin
1148	 47.34	0	1325362..1326075	-	237	145598471	-	YPDSF_1176	-	ABC transporter, ATP-binding protein
1149	 49.23	0	1326079..1327242	-	387	145598472	-	YPDSF_1177	-	membrane protein
1150	 52.90	+1	1327232..1328524	-	430	145598473	-	YPDSF_1178	-	membrane protein
1151	 49.08	0	1328527..1329936	-	469	145598474	-	YPDSF_1179	-	membrane protein
1152	 45.45	0	1330221..1330748	-	175	145598475	-	YPDSF_1180	-	hypothetical protein
1153	 52.10	0	1333442..1335082	-	546	145598476	-	YPDSF_1183	-	membrane protein
1154	 49.80	0	1335193..1336200	-	335	145598477	-	YPDSF_1184	-	glutaminase
1155	 46.86	0	1336652..1336858	-	68	145598478	-	YPDSF_1185	-	hydroxypyruvate isomerase
1156	 50.06	0	1337411..1338181	+	256	145598479	-	YPDSF_1186	-	DeoR family transcriptional regulator
1157	 48.04	0	1338903..1340432	+	509	145598480	-	YPDSF_1187	-	L-asparagine permease
1158	 47.29	0	1340628..1341788	-	386	145598481	-	YPDSF_1188	-	aminotransferase
1159	 41.17	-1	1342140..1342739	+	199	145598482	-	YPDSF_1189	-	Na(+)-translocating NADH-quinone reductase subunit E
1160	 50.57	0	1343044..1344006	-	320	145598483	-	YPDSF_1190	-	LysR family transcriptional regulator
1161	 50.11	0	1344118..1344987	+	289	145598484	-	YPDSF_1191	-	dicarboxylic acid hydrolase
1162	 50.73	0	1345053..1346282	+	409	145598485	-	YPDSF_1192	-	sugar transporter
1163	 38.50	-1	1346502..1347062	+	186	145598486	-	YPDSF_1193	-	hypothetical protein
1164	 41.35	-1	1347087..1347560	+	157	145598487	-	YPDSF_1194	-	lipoprotein
1165	 50.96	0	1347635..1348519	-	294	145598488	-	YPDSF_1195	-	LysR family transcriptional regulator
1166	 53.62	+1	1348608..1349450	+	280	145598489	-	YPDSF_1196	-	citrate lyase beta chain
1167	 51.52	0	1349515..1350042	+	175	145598490	-	YPDSF_1197	-	transcription regulatory protein
1168	 50.42	0	1350065..1351387	+	440	145598491	-	YPDSF_1198	-	4-hydroxybutyrate coenzyme A transferase
1169	 40.13	-1	1352213..1352845	+	210	145598492	-	YPDSF_1199	-	two-component response regulator
1170	 46.78	0	1352820..1356821	+	1333	145598493	-	YPDSF_1200	-	signal transduction histidine kinase
1171	 48.59	0	1357202..1357732	+	176	145598494	-	YPDSF_1201	-	fimbrial protein
1172	 42.48	-1	1357825..1358469	+	214	145598495	-	YPDSF_1202	-	pili assembly chaperone
1173	 49.50	0	1358518..1361109	+	863	145598496	-	YPDSF_1203	-	fimbrial usher protein
1174	 47.63	0	1361125..1362474	+	449	145598497	-	YPDSF_1204	-	hypothetical protein
1175	 44.64	0	1362471..1362983	+	170	145598498	-	YPDSF_1205	-	pili assembly chaperone
1176	 49.55	0	1363045..1364253	+	402	145598499	-	YPDSF_1206	-	transposase for the IS285 insertion element
1177	 43.02	-1	1364277..1364534	+	85	145598500	-	YPDSF_1207	-	pili assembly chaperone
1178	 52.65	0	1365074..1366336	+	420	145598501	-	YPDSF_1208	-	integrase
1179	 55.25	+1	1366530..1367834	-	434	145598502	-	YPDSF_1209	-	salicylate synthase Irp9
1180	 59.83	+2	1367862..1369250	-	462	145598503	-	YPDSF_1210	-	signal transducer
1181	 58.62	+2	1369135..1370937	-	600	145598504	-	YPDSF_1211	-	inner membrane ABC-transporter YbtQ
1182	 57.85	+2	1370924..1372636	-	570	145598505	-	YPDSF_1212	-	lipoprotein inner membrane ABC-transporter
1183	 56.35	+1	1372893..1373852	+	319	145598506	-	YPDSF_1213	-	transcriptional regulator YbtA
1184	 60.15	+2	1374043..1380150	+	2035	145598507	-	YPDSF_1214	-	yersiniabactin biosynthetic protein
1185	 60.78	+2	1380238..1389729	+	3163	145598508	-	YPDSF_1215	-	yersiniabactin biosynthetic protein
1186	 60.40	+2	1389726..1390826	+	366	145598509	-	YPDSF_1216	-	yersiniabactin biosynthetic protein YbtU
1187	 58.43	+2	1390838..1391626	+	262	145598510	-	YPDSF_1217	-	yersiniabactin biosynthetic protein YbtT
1188	 58.81	+2	1391630..1393207	+	525	145598511	-	YPDSF_1218	-	yersiniabactin siderophore biosynthetic protein
1189	 56.53	+1	1393338..1395359	+	673	145598512	-	YPDSF_1219	-	pesticin/yersiniabactin receptor protein
1190	 41.44	-1	1396605..1397159	+	184	145598513	-	YPDSF_1220	-	hypothetical protein
1191	 43.01	-1	1397299..1397484	+	61	145598514	-	YPDSF_1221	-	transcriptional regulator
1192	 37.58	-2	1397503..1397667	+	54	145598515	-	YPDSF_1222	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.