IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1015	 46.59	0	1172502..1173587	-	361	145598338	-	YPDSF_1041	-	lipoprotein
1016	 43.59	0	1173728..1174000	-	90	145598339	-	YPDSF_1042	-	hypothetical protein
1017	 47.60	0	1174721..1175407	+	228	145598340	minC	YPDSF_1043	-	septum formation inhibitor
1018	 46.86	0	1175432..1176244	+	270	145598341	-	YPDSF_1044	-	cell division inhibitor MinD
1019	 44.81	0	1176248..1176517	+	89	145598342	minE	YPDSF_1045	-	cell division topological specificity factor MinE
1020	 47.72	0	1176754..1177914	-	386	145598343	-	YPDSF_1046	-	ribonuclease D
1021	 48.32	0	1178035..1179756	-	573	145598344	-	YPDSF_1047	-	long-chain-fatty-acid--CoA ligase
1022	 54.94	+1	1181103..1181801	-	232	145598345	-	YPDSF_1050	-	hypothetical protein
1023	 50.66	0	1181873..1183777	-	634	145598346	-	YPDSF_1051	-	DEAD box family helicase
1024	 48.70	0	1183908..1184252	+	114	145598347	-	YPDSF_1052	-	hypothetical protein
1025	 47.58	0	1184384..1184713	-	109	145598348	-	YPDSF_1053	-	multidrug efflux system protein MdtI
1026	 46.17	0	1184700..1185143	-	147	145598349	-	YPDSF_1054	-	integral membrane protein
1027	 51.87	0	1185858..1186499	-	213	145598350	-	YPDSF_1055	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1028	 48.42	0	1186741..1188225	-	494	145598351	-	YPDSF_1056	-	glucose-6-phosphate 1-dehydrogenase
1029	 46.10	0	1188422..1189447	+	341	145598352	-	YPDSF_1057	-	DNA-binding transcriptional regulator HexR
1030	 50.24	0	1189777..1191219	+	480	145598353	-	YPDSF_1058	-	pyruvate kinase
1031	 46.94	0	1191559..1192521	-	320	145598354	-	YPDSF_1059	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1032	 48.75	0	1192788..1194104	-	438	145598355	-	YPDSF_1060	-	hypothetical protein
1033	 44.83	0	1194125..1195081	-	318	145598356	znuA	YPDSF_1061	-	high-affinity zinc transporter periplasmic component
1034	 49.08	0	1195154..1195915	+	253	145598357	znuC	YPDSF_1062	-	high-affinity zinc transporter ATPase
1035	 51.65	0	1195912..1196697	+	261	145598358	znuB	YPDSF_1063	-	high-affinity zinc transporter membrane component
1036	 50.35	0	1196752..1197756	-	334	145598359	ruvB	YPDSF_1064	-	Holliday junction DNA helicase B
1037	 50.07	0	1197918..1198598	-	226	145598360	ruvA	YPDSF_1065	-	Holliday junction DNA helicase motor protein
1038	 50.77	0	1198815..1199336	-	173	145598361	ruvC	YPDSF_1066	-	Holliday junction resolvase
1039	 49.06	0	1199545..1200288	-	247	145598362	-	YPDSF_1067	-	hypothetical protein
1040	 52.03	0	1200346..1200789	-	147	145598363	ntpA	YPDSF_1068	-	dATP pyrophosphohydrolase
1041	 51.03	0	1200789..1202585	-	598	145598364	aspS	YPDSF_1069	-	aspartyl-tRNA synthetase
1042	 51.23	0	1203519..1204334	+	271	145598365	-	YPDSF_1070	-	hypothetical protein
1043	 43.94	0	1204514..1204909	+	131	145598366	-	YPDSF_1071	-	hypothetical protein
1044	 49.00	0	1205100..1205903	+	267	145598367	-	YPDSF_1072	-	hypothetical protein
1045	 52.57	0	1205900..1206871	+	323	145598368	-	YPDSF_1073	-	hypothetical protein
1046	 49.15	0	1207064..1207828	-	254	145598369	-	YPDSF_1074	-	copper homeostasis protein CutC
1047	 47.22	0	1208060..1208635	-	191	145598370	-	YPDSF_1075	-	hypothetical protein
1048	 43.45	0	1208665..1208832	+	55	145598371	-	YPDSF_1076	-	hypothetical protein
1049	 49.91	0	1209234..1210964	+	576	145598372	argS	YPDSF_1077	-	arginyl-tRNA synthetase
1050	 41.47	-1	1211195..1215805	-	1536	145598373	-	YPDSF_1078	-	hemolysin
1051	 36.76	-2	1215955..1217616	-	553	145598374	-	YPDSF_1079	-	hemolysin activator protein
1052	 50.98	0	1218072..1219607	-	511	145598375	-	YPDSF_1080	-	membrane protein
1053	 49.72	0	1219874..1221484	-	536	145598376	-	YPDSF_1081	-	oxidoreductase
1054	 48.38	0	1221492..1222076	-	194	145598377	-	YPDSF_1082	-	ribosomal-protein-S5-alanine N-acetyltransferase
1055	 52.49	0	1222370..1223575	+	401	145598378	-	YPDSF_1083	-	multidrug resistance protein MdtH
1056	 45.21	0	1223970..1224533	+	187	145598379	-	YPDSF_1084	-	hypothetical protein
1057	 50.62	0	1224987..1225547	-	186	145598380	-	YPDSF_1085	-	hypothetical protein
1058	 50.27	0	1225584..1226321	-	245	145598381	-	YPDSF_1086	-	putative hydrolase
1059	 55.35	+1	1226956..1228068	-	370	145598382	-	YPDSF_1087	-	transcriptional regulatory protein
1060	 52.71	0	1228082..1228912	-	276	145598383	-	YPDSF_1088	-	hypothetical protein
1061	 51.46	0	1229112..1229453	+	113	145598384	-	YPDSF_1089	-	ABC transporter, ATP-binding subunit
1062	 45.75	0	1229541..1229999	-	152	145598385	-	YPDSF_1090	-	transposase for the IS1541 insertion element
1063	 53.64	+1	1229999..1230904	+	301	145598386	-	YPDSF_1091	-	hypothetical protein
1064	 53.75	+1	1230901..1231767	+	288	145598387	-	YPDSF_1092	-	binding-protein-dependent transport system membrane protein
1065	 52.33	0	1231764..1232600	+	278	145598388	-	YPDSF_1093	-	binding-protein-dependent transport system membrane protein
1066	 51.06	0	1232620..1233702	+	360	145598389	-	YPDSF_1094	-	hypothetical protein
1067	 43.04	-1	1234003..1234878	+	291	145598390	-	YPDSF_1095	-	hypothetical protein
1068	 52.00	0	1235945..1237642	+	565	145598391	-	YPDSF_1096	-	putative sulfate transporter YchM
1069	 50.18	0	1238119..1238973	-	284	145598392	-	YPDSF_1097	-	2-dehydro-3-deoxyphosphooctonate aldolase
1070	 48.27	0	1239069..1239878	-	269	145598393	-	YPDSF_1098	-	putative transcriptional regulator
1071	 43.28	0	1239875..1240276	-	133	145598394	-	YPDSF_1099	-	hypothetical protein
1072	 53.55	+1	1240340..1241170	-	276	145598395	-	YPDSF_1100	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1073	 51.43	0	1241170..1242252	-	360	145598396	prfA	YPDSF_1101	-	peptide chain release factor 1
1074	 50.19	0	1242285..1243601	-	438	145598397	hemA	YPDSF_1102	-	glutamyl-tRNA reductase
1075	 47.76	0	1243853..1244476	+	207	145598398	lolB	YPDSF_1103	-	outer membrane lipoprotein LolB
1076	 49.22	0	1244478..1245377	+	299	145598399	-	YPDSF_1104	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1077	 49.70	0	1244624..1245448	-	274	145598400	-	YPDSF_1105	-	hypothetical protein
1078	 50.00	0	1245718..1246665	+	315	145598401	-	YPDSF_1106	-	ribose-phosphate pyrophosphokinase
1079	 46.52	0	1246867..1247139	-	90	145598402	-	YPDSF_1107	-	hypothetical protein
1080	 47.18	0	1247471..1248091	+	206	145598403	-	YPDSF_1108	-	peptidyl-tRNA hydrolase
1081	 49.54	0	1248255..1249346	+	363	145598404	-	YPDSF_1109	-	translation-associated GTPase
1082	 45.86	0	1249559..1249957	+	132	145598405	-	YPDSF_1110	-	hypothetical protein
1083	 50.78	0	1249975..1250484	+	169	145598406	-	YPDSF_1111	-	integrase core subunit
1084	 41.35	-1	1250532..1250930	-	132	145598407	-	YPDSF_1112	-	rhodanese-like protein
1085	 52.11	0	1250938..1251768	-	276	145598408	-	YPDSF_1113	-	putative esterase
1086	 54.03	+1	1251765..1252421	-	218	145598409	-	YPDSF_1114	-	hypothetical protein
1087	 46.03	0	1253052..1253894	+	280	145598410	-	YPDSF_1115	-	hypothetical protein
1088	 41.67	-1	1254102..1254797	-	231	145598411	-	YPDSF_1116	-	hypothetical protein
1089	 44.89	0	1254812..1255477	-	221	145598412	-	YPDSF_1117	-	flavodoxin
1090	 47.34	0	1255668..1256759	-	363	145598413	-	YPDSF_1118	-	hypothetical protein
1091	 51.23	0	1257024..1257347	+	107	145598414	-	YPDSF_1119	-	response regulator receiver
1092	 52.79	0	1257374..1258396	+	340	145598415	-	YPDSF_1120	-	transposase
1093	 50.38	0	1258396..1259175	+	259	145598416	-	YPDSF_1121	-	transposase/IS protein
1094	 51.73	0	1259214..1259675	+	153	145598417	-	YPDSF_1122	-	transcriptional activator
1095	 51.80	0	1259687..1261072	+	461	145598418	-	YPDSF_1123	-	two-component system sensor protein
1096	 50.83	0	1261349..1261771	+	140	145598419	-	YPDSF_1124	-	decarboxylase
1097	 53.93	+1	1261826..1262296	+	156	145598420	-	YPDSF_1125	-	hypothetical protein
1098	 48.51	0	1262509..1263582	+	357	145598421	-	YPDSF_1126	-	hypothetical protein
1099	 40.29	-1	1264373..1265278	+	301	145598422	-	YPDSF_1127	-	hypothetical protein
1100	 40.62	-1	1265284..1266216	+	310	145598423	-	YPDSF_1128	-	hypothetical protein
1101	 37.12	-2	1266203..1267153	+	316	145598424	-	YPDSF_1129	-	hypothetical protein
1102	 40.38	-1	1267494..1268174	+	226	145598425	-	YPDSF_1130	-	dehydrogenase
1103	 44.39	0	1268279..1268938	+	219	145598426	-	YPDSF_1131	-	hypothetical protein
1104	 45.70	0	1269073..1269711	-	212	145598427	-	YPDSF_1132	-	hypothetical protein
1105	 49.29	0	1269958..1272069	-	703	145598428	-	YPDSF_1133	-	hypothetical protein
1106	 38.23	-2	1272647..1274809	+	720	145598429	-	YPDSF_1134	-	hypothetical protein
1107	 49.55	0	1274855..1276063	-	402	145598430	-	YPDSF_1135	-	transposase for the IS285 insertion element
1108	 38.86	-1	1276196..1277914	+	572	145598431	-	YPDSF_1136	-	hypothetical protein
1109	 39.57	-1	1278084..1278548	+	154	145598432	-	YPDSF_1137	-	hypothetical protein
1110	 50.59	0	1278709..1279896	-	395	145598433	-	YPDSF_1138	-	glycosyl transferase
1111	 46.84	0	1279893..1280477	-	194	145598434	-	YPDSF_1139	-	hypothetical protein
1112	 48.14	0	1280474..1281628	-	384	145598435	-	YPDSF_1140	-	glycosyl transferase
1113	 49.78	0	1281628..1282539	-	303	145598436	-	YPDSF_1141	-	dehydrogenase
1114	 52.06	0	1282724..1284010	-	428	145598437	-	YPDSF_1142	-	coenzyme synthetase
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.