IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
969	 51.92	0	1131174..1131329	+	51	145598292	-	YPDSF_0995	-	hypothetical protein
970	 51.28	0	1131588..1131743	-	51	145598293	-	YPDSF_0996	-	hypothetical protein
971	 41.43	-1	1131740..1132159	-	139	145598294	-	YPDSF_0997	-	phage tail fiber assembly protein
972	 44.34	0	1132170..1133087	-	305	145598295	-	YPDSF_0998	-	hypothetical protein
973	 44.28	0	1133104..1134117	-	337	145598296	-	YPDSF_0999	-	hypothetical protein
974	 47.63	0	1134102..1137305	-	1067	145598297	-	YPDSF_1000	-	phage host specificity protein
975	 49.92	0	1137877..1138497	-	206	145598298	-	YPDSF_1001	-	phage tail assembly protein
976	 37.32	-2	1138911..1139462	-	183	145598299	-	YPDSF_1002	-	phage-related membrane protein
977	 45.04	0	1139561..1140568	-	335	145598300	-	YPDSF_1003	-	hypothetical protein
978	 40.56	-1	1140825..1141364	+	179	145598301	-	YPDSF_1004	-	phage regulatory protein
979	 42.71	-1	1141443..1141634	-	63	145598302	-	YPDSF_1005	-	hypothetical protein
980	 52.46	0	1142347..1143057	-	236	145598303	-	YPDSF_1006	-	phage minor tail protein
981	 50.60	0	1143060..1143812	-	250	145598304	-	YPDSF_1007	-	hypothetical protein
982	 45.97	0	1143932..1144390	-	152	145598305	-	YPDSF_1008	-	transposase for the IS1541 insertion element
983	 45.75	0	1144642..1145100	-	152	145598306	-	YPDSF_1009	-	transposase for the IS1541 insertion element
984	 52.92	+1	1145406..1145747	-	113	145598307	-	YPDSF_1010	-	hypothetical protein
985	 46.67	0	1145750..1149265	-	1171	145598308	-	YPDSF_1011	-	phage tail protein
986	 46.47	0	1149574..1149885	-	103	145598309	-	YPDSF_1012	-	hypothetical protein
987	 50.05	0	1149898..1150818	-	306	145598310	-	YPDSF_1013	-	hypothetical protein
988	 44.36	0	1150884..1151291	-	135	145598311	-	YPDSF_1014	-	hypothetical protein
989	 46.32	0	1151288..1151872	-	194	145598312	-	YPDSF_1015	-	hypothetical protein
990	 48.48	0	1151874..1152170	-	98	145598313	-	YPDSF_1016	-	hypothetical protein
991	 41.57	-1	1152227..1152481	-	84	145598314	-	YPDSF_1017	-	hypothetical protein
992	 46.52	0	1152478..1153008	-	176	145598315	-	YPDSF_1018	-	hypothetical protein
993	 49.42	0	1153008..1154213	-	401	145598316	-	YPDSF_1019	-	hypothetical protein
994	 50.78	0	1154227..1155000	-	257	145598317	-	YPDSF_1020	-	hypothetical protein
995	 49.06	0	1155122..1156234	-	370	145598318	-	YPDSF_1021	-	hypothetical protein
996	 50.78	0	1156235..1156876	-	213	145598319	-	YPDSF_1022	-	hypothetical protein
997	 48.15	0	1156895..1157623	-	242	145598320	-	YPDSF_1023	-	hypothetical protein
998	 48.29	0	1157623..1159113	-	496	145598321	-	YPDSF_1024	-	hypothetical protein
999	 47.33	0	1159123..1159572	-	149	145598322	-	YPDSF_1025	-	hypothetical protein
1000	 47.96	0	1159603..1160238	-	211	145598323	-	YPDSF_1026	-	hypothetical protein
1001	 47.76	0	1160695..1161408	-	237	145598324	-	YPDSF_1027	-	phage regulatory protein
1002	 50.76	0	1161954..1162412	-	152	145598325	-	YPDSF_1028	-	prophage endopeptidase
1003	 51.07	0	1162397..1162909	-	170	145598326	-	YPDSF_1029	-	phage lysozyme
1004	 45.98	0	1163655..1163828	-	57	145598327	-	YPDSF_1030	-	hypothetical protein
1005	 42.91	-1	1164288..1164851	-	187	145598328	-	YPDSF_1031	-	hypothetical protein
1006	 43.85	0	1165122..1165511	-	129	145598329	-	YPDSF_1032	-	phage antitermination protein
1007	 47.03	0	1165512..1166117	-	201	145598330	-	YPDSF_1033	-	hypothetical protein
1008	 50.56	0	1166191..1166637	-	148	145598331	-	YPDSF_1034	-	hypothetical protein
1009	 50.23	0	1166718..1167362	+	214	145598332	-	YPDSF_1035	-	methyltransferase
1010	 50.38	0	1168090..1168869	-	259	145598333	-	YPDSF_1036	-	transposase/IS protein
1011	 52.79	0	1168869..1169891	-	340	145598334	-	YPDSF_1037	-	transposase for insertion sequence IS100
1012	 49.07	0	1169961..1171199	+	412	145598335	-	YPDSF_1038	-	hypothetical protein
1013	 44.07	0	1171226..1171672	-	148	145598336	-	YPDSF_1039	-	hypothetical protein
1014	 47.34	0	1171775..1172431	-	218	145598337	-	YPDSF_1040	-	hypothetical protein
1015	 46.59	0	1172502..1173587	-	361	145598338	-	YPDSF_1041	-	lipoprotein
1016	 43.59	0	1173728..1174000	-	90	145598339	-	YPDSF_1042	-	hypothetical protein
1017	 47.60	0	1174721..1175407	+	228	145598340	minC	YPDSF_1043	-	septum formation inhibitor
1018	 46.86	0	1175432..1176244	+	270	145598341	-	YPDSF_1044	-	cell division inhibitor MinD
1019	 44.81	0	1176248..1176517	+	89	145598342	minE	YPDSF_1045	-	cell division topological specificity factor MinE
1020	 47.72	0	1176754..1177914	-	386	145598343	-	YPDSF_1046	-	ribonuclease D
1021	 48.32	0	1178035..1179756	-	573	145598344	-	YPDSF_1047	-	long-chain-fatty-acid--CoA ligase
1022	 54.94	+1	1181103..1181801	-	232	145598345	-	YPDSF_1050	-	hypothetical protein
1023	 50.66	0	1181873..1183777	-	634	145598346	-	YPDSF_1051	-	DEAD box family helicase
1024	 48.70	0	1183908..1184252	+	114	145598347	-	YPDSF_1052	-	hypothetical protein
1025	 47.58	0	1184384..1184713	-	109	145598348	-	YPDSF_1053	-	multidrug efflux system protein MdtI
1026	 46.17	0	1184700..1185143	-	147	145598349	-	YPDSF_1054	-	integral membrane protein
1027	 51.87	0	1185858..1186499	-	213	145598350	-	YPDSF_1055	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1028	 48.42	0	1186741..1188225	-	494	145598351	-	YPDSF_1056	-	glucose-6-phosphate 1-dehydrogenase
1029	 46.10	0	1188422..1189447	+	341	145598352	-	YPDSF_1057	-	DNA-binding transcriptional regulator HexR
1030	 50.24	0	1189777..1191219	+	480	145598353	-	YPDSF_1058	-	pyruvate kinase
1031	 46.94	0	1191559..1192521	-	320	145598354	-	YPDSF_1059	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1032	 48.75	0	1192788..1194104	-	438	145598355	-	YPDSF_1060	-	hypothetical protein
1033	 44.83	0	1194125..1195081	-	318	145598356	znuA	YPDSF_1061	-	high-affinity zinc transporter periplasmic component
1034	 49.08	0	1195154..1195915	+	253	145598357	znuC	YPDSF_1062	-	high-affinity zinc transporter ATPase
1035	 51.65	0	1195912..1196697	+	261	145598358	znuB	YPDSF_1063	-	high-affinity zinc transporter membrane component
1036	 50.35	0	1196752..1197756	-	334	145598359	ruvB	YPDSF_1064	-	Holliday junction DNA helicase B
1037	 50.07	0	1197918..1198598	-	226	145598360	ruvA	YPDSF_1065	-	Holliday junction DNA helicase motor protein
1038	 50.77	0	1198815..1199336	-	173	145598361	ruvC	YPDSF_1066	-	Holliday junction resolvase
1039	 49.06	0	1199545..1200288	-	247	145598362	-	YPDSF_1067	-	hypothetical protein
1040	 52.03	0	1200346..1200789	-	147	145598363	ntpA	YPDSF_1068	-	dATP pyrophosphohydrolase
1041	 51.03	0	1200789..1202585	-	598	145598364	aspS	YPDSF_1069	-	aspartyl-tRNA synthetase
1042	 51.23	0	1203519..1204334	+	271	145598365	-	YPDSF_1070	-	hypothetical protein
1043	 43.94	0	1204514..1204909	+	131	145598366	-	YPDSF_1071	-	hypothetical protein
1044	 49.00	0	1205100..1205903	+	267	145598367	-	YPDSF_1072	-	hypothetical protein
1045	 52.57	0	1205900..1206871	+	323	145598368	-	YPDSF_1073	-	hypothetical protein
1046	 49.15	0	1207064..1207828	-	254	145598369	-	YPDSF_1074	-	copper homeostasis protein CutC
1047	 47.22	0	1208060..1208635	-	191	145598370	-	YPDSF_1075	-	hypothetical protein
1048	 43.45	0	1208665..1208832	+	55	145598371	-	YPDSF_1076	-	hypothetical protein
1049	 49.91	0	1209234..1210964	+	576	145598372	argS	YPDSF_1077	-	arginyl-tRNA synthetase
1050	 41.47	-1	1211195..1215805	-	1536	145598373	-	YPDSF_1078	-	hemolysin
1051	 36.76	-2	1215955..1217616	-	553	145598374	-	YPDSF_1079	-	hemolysin activator protein
1052	 50.98	0	1218072..1219607	-	511	145598375	-	YPDSF_1080	-	membrane protein
1053	 49.72	0	1219874..1221484	-	536	145598376	-	YPDSF_1081	-	oxidoreductase
1054	 48.38	0	1221492..1222076	-	194	145598377	-	YPDSF_1082	-	ribosomal-protein-S5-alanine N-acetyltransferase
1055	 52.49	0	1222370..1223575	+	401	145598378	-	YPDSF_1083	-	multidrug resistance protein MdtH
1056	 45.21	0	1223970..1224533	+	187	145598379	-	YPDSF_1084	-	hypothetical protein
1057	 50.62	0	1224987..1225547	-	186	145598380	-	YPDSF_1085	-	hypothetical protein
1058	 50.27	0	1225584..1226321	-	245	145598381	-	YPDSF_1086	-	putative hydrolase
1059	 55.35	+1	1226956..1228068	-	370	145598382	-	YPDSF_1087	-	transcriptional regulatory protein
1060	 52.71	0	1228082..1228912	-	276	145598383	-	YPDSF_1088	-	hypothetical protein
1061	 51.46	0	1229112..1229453	+	113	145598384	-	YPDSF_1089	-	ABC transporter, ATP-binding subunit
1062	 45.75	0	1229541..1229999	-	152	145598385	-	YPDSF_1090	-	transposase for the IS1541 insertion element
1063	 53.64	+1	1229999..1230904	+	301	145598386	-	YPDSF_1091	-	hypothetical protein
1064	 53.75	+1	1230901..1231767	+	288	145598387	-	YPDSF_1092	-	binding-protein-dependent transport system membrane protein
1065	 52.33	0	1231764..1232600	+	278	145598388	-	YPDSF_1093	-	binding-protein-dependent transport system membrane protein
1066	 51.06	0	1232620..1233702	+	360	145598389	-	YPDSF_1094	-	hypothetical protein
1067	 43.04	-1	1234003..1234878	+	291	145598390	-	YPDSF_1095	-	hypothetical protein
1068	 52.00	0	1235945..1237642	+	565	145598391	-	YPDSF_1096	-	putative sulfate transporter YchM
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.