IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
548	 49.02	0	671835..672344	-	169	123440951	-	YE0585	-	putative lipoprotein
549	 48.37	0	672355..673578	-	407	123440952	-	YE0586	-	hypothetical protein
550	 47.08	0	673677..674309	-	210	123440953	-	YE0587	-	hypothetical protein
551	 49.89	0	674513..677158	-	881	123440954	-	YE0588	-	putative cation-transporting P-type ATPase
552	 53.54	+1	677714..679633	+	639	123440955	slt	YE0589	-	lytic murein transglycosylase
553	 48.65	0	679880..680212	+	110	123440956	trpR	YE0590	-	Trp operon repressor
554	 49.81	0	680221..680748	-	175	123440957	-	YE0591	-	NTPase
555	 56.02	+1	680805..681452	+	215	123440958	gpmB	YE0592	-	phosphoglycerate mutase
556	 48.79	0	681449..682315	-	288	123440959	rob	YE0593	-	putative right origin-binding protein
557	 42.46	-1	682540..683010	+	156	123440960	creA	YE0594	-	hypothetical protein
558	 49.37	0	683089..683805	-	238	123440961	arcA	YE0595	-	two-component response regulator
559	 44.68	0	683908..684048	+	46	123440962	-	YE0596	-	hypothetical protein
560	 55.91	+1	684458..685244	-	261	123440963	-	YE0598	-	transposase for insertion sequence element IS1665
561	 55.98	+1	685300..686637	-	445	123440964	-	YE0599	-	transposase for insertion sequence element IS1660
562	 49.88	0	687253..689712	+	819	123440965	thrA	YE0600	-	bifunctional aspartokinase I/homeserine dehydrogenase I
563	 52.26	0	689715..690644	+	309	123440966	thrB	YE0601	-	homoserine kinase
564	 51.09	0	690648..691937	+	429	123440967	thrC	YE0602	-	threonine synthase
565	 47.10	0	692084..692860	-	258	123440968	-	YE0603	-	hypothetical protein
566	 48.32	0	693271..694224	+	317	123440969	talB	YE0604	-	transaldolase B
567	 48.98	0	694381..694968	+	195	123440970	mogA	YE0605	-	molybdenum cofactor biosynthesis protein
568	 48.46	0	695097..696464	+	455	123440971	-	YE0606	-	putative transport protein
569	 37.21	-2	696532..698982	-	816	123440972	-	YE0607	-	hypothetical protein
570	 49.49	0	699221..699814	-	197	123440973	yaaH	YE0608	-	hypothetical protein
571	 47.59	0	700187..702094	+	635	123440974	dnaK	YE0609	-	molecular chaperone DnaK
572	 49.87	0	702206..703336	+	376	123440975	dnaJ	YE0610	-	chaperone protein DnaJ
573	 46.23	0	703567..704745	+	392	123440976	ant	YE0611	-	sodium-proton antiporter
574	 43.22	0	704895..705794	+	299	123440977	nhaR	YE0612	-	transcriptional activator NhaR
575	 46.97	0	705938..706201	-	87	123440978	rpsT	YE0613	-	30S ribosomal protein S20
576	 48.99	0	706615..707553	+	312	123440979	b0025	YE0615	-	bifunctional riboflavin kinase/FMN adenylyltransferase
577	 50.59	0	707585..710401	+	938	123440980	ileS	YE0616	-	isoleucyl-tRNA synthetase
578	 46.86	0	710401..710910	+	169	123440981	lspA	YE0617	-	lipoprotein signal peptidase
579	 49.09	0	710960..711397	+	145	123440982	b0028	YE0618	-	FKBP-type peptidyl-prolyl cis-trans isomerase
580	 50.52	0	711378..712331	+	317	123440983	ispH	YE0619	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
581	 49.51	0	712666..713487	+	273	123440984	b0031	YE0620	-	dihydrodipicolinate reductase
582	 50.69	0	713960..715123	+	387	123440985	b0032	YE0621	-	carbamoyl phosphate synthase small subunit
583	 50.62	0	715140..718373	+	1077	123440986	carB	YE0622	-	carbamoyl phosphate synthase large subunit
584	 49.27	0	718571..719185	-	204	123440987	-	YE0623	-	putative LysE type translocator
585	 49.75	0	719338..720135	+	265	123440988	b4364	YE0624	-	hypothetical protein
586	 45.59	0	720135..720599	+	154	123440989	-	YE0625	-	hypothetical protein
587	 49.78	0	720773..721234	+	153	123440990	folA	YE0626	-	dihydrofolate reductase
588	 48.46	0	721382..722260	-	292	123440991	apaH	YE0628	-	diadenosine tetraphosphatase
589	 50.26	0	722275..722652	-	125	123440992	apaG	YE0629	-	ApaG
590	 47.86	0	722666..723484	-	272	123440993	ksgA	YE0630	-	dimethyladenosine transferase
591	 48.90	0	723477..724472	-	331	123440994	pdxA	YE0631	-	4-hydroxythreonine-4-phosphate dehydrogenase
592	 47.97	0	724456..725760	-	434	123440995	b0053	YE0632	-	peptidyl-prolyl cis-trans isomerase SurA
593	 47.28	0	725828..728194	-	788	123440996	b0054	YE0633	-	organic solvent tolerance protein
594	 50.33	0	728454..729206	+	250	123440997	djlA	YE0634	-	DNA-J like membrane chaperone protein
595	 51.78	0	729292..729882	-	196	123440998	rluA	YE0635	-	ribosomal large subunit pseudouridine synthase A
596	 51.19	0	730023..732929	-	968	123440999	hepA	YE0636	-	ATP-dependent helicase HepA
597	 53.14	+1	733066..735438	-	790	123441000	dinA	YE0637	-	DNA polymerase II
598	 50.71	0	735879..736649	+	256	123441001	-	YE0639	-	DedA family membrane protein
599	 53.58	+1	736636..737292	-	218	123441002	thiQ	YE0640	-	thiamine transporter ATP-binding subunit
600	 53.04	+1	737324..738871	-	515	123441003	thiP	YE0641	-	thiamine transporter membrane protein
601	 48.08	0	738907..739869	-	320	123441004	tbpA	YE0642	-	thiamine transporter substrate binding subunit
602	 38.81	-1	740349..741152	+	267	123441005	-	YE0643	-	hypothetical protein
603	 49.70	0	741654..743315	-	553	123441006	-	YE0644	-	transcriptional regulator SgrR
604	 49.67	0	743440..744339	+	299	123441007	-	YE0645	-	putative pyruvate formate-lyase 3 activating enzyme
605	 51.75	0	744344..746776	+	810	123441008	-	YE0646	-	putative formate acetyltransferase
606	 42.65	-1	746972..747175	+	67	123441009	-	YE0647	-	putative DNA-damage-inducible protein
607	 49.49	0	747546..748727	+	393	123441010	setA	YE0648	-	sugar efflux transporter
608	 49.09	0	748884..750146	-	420	123441011	mtr	YE0649	-	tryptophan permease
609	 48.04	0	750255..751655	-	466	123441012	tnaA	YE0650	-	tryptophanase
610	 42.91	-1	752330..752893	-	187	123441013	leuD	YE0651	-	isopropylmalate isomerase small subunit
611	 52.13	0	752965..754395	-	476	123441014	leuC	YE0652	-	isopropylmalate isomerase large subunit
612	 49.91	0	754397..755494	-	365	123441015	leuB	YE0653	-	3-isopropylmalate dehydrogenase
613	 47.41	0	755491..757053	-	520	123441016	leuA	YE0654	-	2-isopropylmalate synthase
614	 39.18	-1	758158..759114	+	318	123441017	leuO	YE0655	-	leucine transcriptional activator
615	 47.61	0	759447..761246	+	599	123441018	-	YE0656	-	putative AMP-binding enzyme-family protein
616	 49.94	0	761712..763439	+	575	123441019	ilvI	YE0658	-	acetolactate synthase 3 catalytic subunit
617	 47.88	0	763442..763936	+	164	123441020	ilvH	YE0659	-	acetolactate synthase 3 regulatory subunit
618	 51.94	0	764279..765283	+	334	123441021	cra	YE0661	-	DNA-binding transcriptional regulator FruR
619	 48.99	0	765339..765785	-	148	123441022	-	YE0662	-	hypothetical protein
620	 50.54	0	766702..767160	+	152	123441023	-	YE0663	-	cell division protein MraZ
621	 49.84	0	767163..768125	+	320	123441024	mraW	YE0664	-	S-adenosyl-methyltransferase MraW
622	 48.91	0	768122..768442	+	106	123441025	ftsL	YE0665	-	cell division protein FtsL
623	 52.27	0	768503..770266	+	587	123441026	ftsI	YE0666	-	penicillin-binding protein 3
624	 53.16	+1	770268..771740	+	490	123441027	murE	YE0667	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
625	 52.75	+1	771737..773101	+	454	123441028	murF	YE0668	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
626	 50.60	0	773095..774177	+	360	123441029	mraY	YE0669	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
627	 52.13	0	774180..775514	+	444	123441030	murD	YE0670	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
628	 49.29	0	775514..776716	+	400	123441031	ftsW	YE0671	-	cell division protein FtsW
629	 54.49	+1	776713..777780	+	355	123441032	murG	YE0672	-	N-acetylglucosaminyl transferase
630	 52.03	0	777854..779329	+	491	123441033	murC	YE0673	-	UDP-N-acetylmuramate--L-alanine ligase
631	 49.40	0	779322..780242	+	306	123441034	ddl	YE0674	-	D-alanine--D-alanine ligase
632	 52.21	0	780244..781101	+	285	123441035	ftsQ	YE0675	-	cell division protein FtsQ
633	 50.04	0	781098..782354	+	418	123441036	ftsA	YE0676	-	cell division protein FtsA
634	 51.22	0	782427..783578	+	383	123441037	ftsZ	YE0677	-	cell division protein FtsZ
635	 46.69	0	783664..784599	+	311	123441038	lpxC	YE0678	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
636	 46.70	0	784809..785339	-	176	123441039	-	YE0679	-	hypothetical protein
637	 49.25	0	785362..785895	+	177	123441040	-	YE0680	-	SecA regulator SecM
638	 48.25	0	785973..788687	+	904	123441041	secA	YE0681	-	preprotein translocase subunit SecA
639	 45.22	0	788821..789207	+	128	123441042	mutT	YE0682	-	nucleoside triphosphate pyrophosphohydrolase
640	 49.76	0	789279..789485	-	68	123441043	-	YE0683	-	zinc-binding protein
641	 46.22	0	789530..790282	-	250	123441044	-	YE0684	-	hypothetical protein
642	 47.50	0	790279..790899	-	206	123441045	coaE	YE0685	-	dephospho-CoA kinase
643	 47.32	0	791193..792236	+	347	123441046	guaC	YE0686	-	guanosine 5'-monophosphate oxidoreductase
644	 43.75	0	792555..793754	-	399	123441047	hofC	YE0688	-	type IV pilin biogenesis protein
645	 45.15	0	793751..795205	-	484	123441048	hofC	YE0689	-	hypothetical protein
646	 44.60	0	795222..795656	-	144	123441049	ppdD	YE0690	-	putative major pilin subunit
647	 49.61	0	795861..796769	-	302	123441050	nadC	YE0691	-	quinolinate phosphoribosyltransferase
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.