IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3782	 50.97	0	4364303..4365589	-	428	123444185	glgC	YE4011	-	glucose-1-phosphate adenylyltransferase
3783	 51.08	0	4365599..4367587	-	662	123444186	glgX	YE4012	-	glycogen debranching enzyme
3784	 48.67	0	4367589..4369772	-	727	123444187	glgB	YE4013	-	glycogen branching enzyme
3785	 49.06	0	4370269..4371966	+	565	123444188	-	YE4014	-	hypothetical protein
3786	 48.49	0	4371963..4372859	-	298	123444189	budR	YE4015	-	putative transcriptional regulator
3787	 48.09	0	4372967..4373752	+	261	123444190	budA	YE4016	-	alpha-acetolactate decarboxylase
3788	 50.30	0	4373792..4375471	+	559	123444191	budB	YE4017	-	acetolactate synthase
3789	 51.36	0	4375896..4376999	-	367	123444192	asd	YE4018	-	aspartate-semialdehyde dehydrogenase
3790	 46.84	0	4377235..4377819	+	194	123444193	yhgN	YE4019	-	dITP- and XTP- hydrolyzing protein
3791	 48.93	0	4377936..4378448	-	170	123444194	-	YE4020	-	putative gluconokinase
3792	 51.94	0	4378670..4379986	+	438	123444195	gntM	YE4021	-	putative gluconate permease
3793	 49.60	0	4380011..4381006	-	331	123444196	gntR	YE4022	-	gluconate utilization system Gnt-I transcriptional repressor
3794	 46.98	0	4381299..4381994	-	231	123444197	-	YE4023	-	hypothetical protein
3795	 45.31	0	4382381..4382881	+	166	123444198	-	YE4024	-	hypothetical protein
3796	 42.70	-1	4382949..4383845	-	298	123444199	-	YE4025	-	hypothetical protein
3797	 46.45	0	4383979..4384992	-	337	123444200	idh	YE4026	-	myo-inositol 2-dehydrogenase
3798	 48.07	0	4385072..4387012	-	646	123444201	-	YE4027	-	putative thiamine pyrophosphate-dependent protein
3799	 48.16	0	4387501..4389402	+	633	123444202	-	YE4028	-	putative carbohydrate kinase
3800	 45.08	0	4389687..4390520	+	277	123444203	-	YE4029	-	hypothetical protein
3801	 47.52	0	4390615..4391439	-	274	123444204	-	YE4030	-	hypothetical protein
3802	 48.07	0	4391495..4393000	-	501	123444205	-	YE4031	-	putative aldehyde dehydrogenase
3803	 50.29	0	4393545..4394759	-	404	123444206	-	YE4032	-	hypothetical protein
3804	 48.22	0	4394855..4395808	+	317	123444207	-	YE4033	-	LysR family transcriptional regulator
3805	 37.30	-2	4396053..4396757	+	234	123444208	-	YE4034	-	hypothetical protein
3806	 48.05	0	4397017..4397607	-	196	123444209	btuR	YE4035	-	cob(i)alamin adenosyltransferase
3807	 44.63	0	4397629..4399275	-	548	123444210	fumB	YE4036	-	fumarate hydratase class I, anaerobic
3808	 43.43	0	4399544..4400464	-	306	123444211	-	YE4037	-	LysR family transcriptional regulator
3809	 45.59	0	4400906..4401688	+	260	123444212	cobA	YE4038	-	uroporphyrin-III C-methyltransferase
3810	 47.51	0	4401710..4402591	+	293	123444213	pduX	YE4039	-	PduX
3811	 44.52	0	4403047..4403493	+	148	123444214	mamA	YE4040	-	methylaspartate mutase subunit S
3812	 47.49	0	4403490..4404881	+	463	123444215	mutL	YE4041	-	glutamate mutase
3813	 49.03	0	4404896..4406341	+	481	123444216	mutE	YE4042	-	methylaspartate mutase E chain
3814	 47.71	0	4406341..4407585	+	414	123444217	-	YE4043	-	methylaspartate ammonia-lyase
3815	 50.00	0	4407587..4408960	+	457	123444218	-	YE4044	-	hypothetical protein
3816	 37.74	-2	4408957..4409274	+	105	123444219	-	YE4045	-	hypothetical protein
3817	 44.80	0	4409436..4410761	+	441	123444220	-	YE4046	-	sodium-dicarboxylic acid transporter
3818	 50.00	0	4410848..4412047	-	399	123444221	-	YE4047	-	hypothetical protein
3819	 49.43	0	4412359..4413855	+	498	123444222	-	YE4048	-	phosphate transport protein
3820	 44.35	0	4413962..4414297	-	111	123444223	uspB	YE4049	-	universal stress protein UspB
3821	 45.19	0	4414990..4415436	+	148	123444224	uspA	YE4050	-	universal stress protein A
3822	 50.97	0	4415700..4417043	+	447	123444225	gdhA	YE4051	-	glutamate dehydrogenase
3823	 41.31	-1	4417247..4418725	+	492	123444226	-	YE4052	-	metalloprotease
3824	 54.68	+1	4418851..4419609	-	252	123444227	-	YE4053	-	putative methyltransferase
3825	 51.25	0	4419613..4421655	-	680	123444228	opdA	YE4054	-	oligopeptidase A
3826	 49.47	0	4421992..4422834	+	280	123444229	-	YE4055	-	hypothetical protein
3827	 50.48	0	4423078..4424430	+	450	123444230	gor	YE4057	-	glutathione reductase
3828	 47.78	0	4424724..4427969	-	1081	123444231	yapE	YE4059	-	putative autotransporter protein
3829	 48.79	0	4428381..4429370	+	329	123444232	-	YE4060	-	hypothetical protein
3830	 48.82	0	4429436..4430158	+	240	123444233	cdh	YE4061	-	CDP-diacylglycerol pyrophosphatase
3831	 50.87	0	4430163..4432283	-	706	123444234	-	YE4062	-	hypothetical protein
3832	 47.36	0	4432402..4433178	-	258	123444235	-	YE4063	-	EAL domain-containing protein
3833	 51.24	0	4433428..4433628	+	66	123444236	-	YE4064	-	putative tautomerase
3834	 51.85	0	4433773..4434717	+	314	123444237	kdgK	YE4065	-	2-dehydro-3-deoxygluconokinase
3835	 50.20	0	4434877..4436382	-	501	123444238	-	YE4066	-	insulinase family protease
3836	 47.64	0	4436866..4438158	-	430	123444239	dctA	YE4067	-	C4-dicarboxylate transporter DctA
3837	 43.54	0	4438536..4439015	-	159	123444240	-	YE4068	-	hypothetical protein
3838	 49.62	0	4439140..4440858	-	572	123444241	pelY	YE4069	-	periplasmic pectate lyase precursor
3839	 39.29	-1	4440935..4441639	-	234	123444242	-	YE4070	-	hypothetical protein
3840	 47.71	0	4442362..4443891	-	509	123444243	-	YE4071	-	hypothetical protein
3841	 52.21	0	4444122..4447607	-	1161	123444244	bcsC	YE4072	-	cellulose synthase subunit BcsC
3842	 51.06	0	4447589..4448716	-	375	123444245	bcsZ	YE4072A	-	endo-1,4-D-glucanase
3843	 52.67	+1	4448722..4451028	-	768	123444246	bcsB	YE4073	-	cellulose synthase regulator protein
3844	 52.32	0	4451036..4453663	-	875	123444247	bcsA	YE4074	-	cellulose synthase catalytic subunit
3845	 50.14	0	4453660..4454397	-	245	123444248	bcsF	YE4075	-	hypothetical protein
3846	 43.23	0	4454401..4454592	-	63	123444249	-	YE4076	-	hypothetical protein
3847	 50.32	0	4454789..4456348	+	519	123444250	bcsE	YE4077	-	hypothetical protein
3848	 49.36	0	4456536..4458188	+	550	123444251	bcsG	YE4078	-	hypothetical protein
3849	 50.70	0	4458531..4459388	-	285	123444252	dppE	YE4079	-	dipeptide transport ATP-binding protein
3850	 52.70	+1	4459550..4460530	-	326	123444253	dppD	YE4080	-	dipeptide transporter ATP-binding subunit
3851	 55.37	+1	4460544..4461446	-	300	123444254	dppC	YE4081	-	dipeptide transporter
3852	 51.47	0	4461457..4462476	-	339	123444255	dppB	YE4082	-	dipeptide transporter permease DppB
3853	 49.32	0	4462836..4464443	-	535	123444256	dppA	YE4083	-	periplasmic dipeptide transport protein
3854	 35.86	-2	4465126..4466508	-	460	123444257	-	YE4084	-	hypothetical protein
3855	 44.71	0	4466537..4468162	-	541	123444258	-	YE4085	-	putative hemolysin activator protein
3856	 34.32	-2	4468292..4469404	-	370	123444259	-	YE4086	-	hypothetical protein
3857	 46.02	0	4469823..4471154	-	443	123444260	uhpC	YE4087	-	regulatory protein UhpC
3858	 46.54	0	4471248..4472777	-	509	123444261	uhpB	YE4088	-	sensory histidine kinase UhpB
3859	 49.41	0	4472774..4473364	-	196	123444262	uhpA	YE4089	-	two-component system response regulator
3860	 45.80	0	4473476..4475167	-	563	123444263	yhjW	YE4090	-	phosphoethanolamine transferase
3861	 49.53	0	4475427..4475852	-	141	123444264	-	YE4091	-	putative osmotic/stress related protein
3862	 47.40	0	4476124..4477587	-	487	123444265	-	YE4092	-	hypothetical protein
3863	 48.21	0	4477855..4479252	-	465	123444266	-	YE4093	-	amino acid permease
3864	 50.79	0	4479362..4480885	-	507	123444267	hutH	YE4094	-	histidine ammonia-lyase
3865	 51.18	0	4480894..4482585	-	563	123444268	hutU	YE4095	-	urocanate hydratase
3866	 33.33	-2	4482645..4482824	-	59	123444269	-	YE4096	-	hypothetical protein
3867	 32.76	-2	4482954..4483127	-	57	123444270	-	YE4097	-	hypothetical protein
3868	 46.40	0	4483223..4484416	-	397	123444271	manA	YE4098	-	mannose-6-phosphate isomerase
3869	 44.54	0	4484438..4485838	-	466	123444272	bglA	YE4099	-	beta-glucosidase
3870	 48.54	0	4485909..4488104	-	731	123444273	-	YE4100	-	beta-1,4 mannanase
3871	 47.72	0	4488112..4489446	-	444	123444274	-	YE4101	-	putative outer membrane porin
3872	 43.53	0	4489690..4490964	-	424	123444275	-	YE4102	-	putative cellobiose-specific phosphotransferase
3873	 38.41	-1	4491149..4491463	+	104	123444276	-	YE4103	-	pts system, cellobiose-specific IIB component
3874	 45.40	0	4491474..4492799	+	441	123444277	-	YE4104	-	putative phosphotransferase protein
3875	 40.59	-1	4492830..4493132	+	100	123444278	-	YE4105	-	putative phosphotransferase protein
3876	 43.85	0	4493211..4494113	+	300	123444279	-	YE4106	-	putative ROK family protein
3877	 46.83	0	4494216..4495178	+	320	123444280	-	YE4107	-	putative transcriptional regulator
3878	 43.51	0	4495212..4495673	-	153	123444281	-	YE4108	-	hypothetical protein
3879	 37.85	-2	4496817..4497812	-	331	123444282	-	YE4109	-	hypothetical protein
3880	 44.12	0	4497889..4498296	-	135	123444283	-	YE4110	-	hypothetical protein
3881	 52.13	0	4498512..4498793	-	93	123444284	-	YE4111	-	hypothetical protein
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.