IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
307	 46.90	0	383508..386036	-	842	123440710	-	YE0322	-	putative inner-membrane transport protein
308	 48.66	0	386263..388395	+	710	123440711	foxA	YE0323	-	ferrioxamine receptor precursor
309	 50.17	0	388865..390373	+	502	123440712	-	YE0324	-	putative ATP/GTP-binding protein
310	 54.43	+1	390519..391319	-	266	123440713	hemV	YE0327	-	hemin importer ATP-binding subunit
311	 55.52	+1	391312..392316	-	334	123440714	hemU	YE0328	-	hemin transport system permease protein HmuU
312	 52.98	+1	392313..393152	-	279	123440715	hemT	YE0329	-	hemin-binding periplasmic protein
313	 48.65	0	393149..394186	-	345	123440716	hemS	YE0330	-	hemin transport protein
314	 51.94	0	394303..396366	-	687	123440717	hemR	YE0331	-	hemin receptor precursor
315	 45.93	0	396539..396784	-	81	123440718	hemP	YE0332	-	hemin uptake protein
316	 53.00	+1	396816..397466	-	216	123440719	-	YE0333	-	hypothetical protein
317	 49.27	0	397463..398008	-	181	123440720	-	YE0334	-	hypothetical protein
318	 50.08	0	398005..399318	-	437	123440721	hemN	YE0335	-	coproporphyrinogen III oxidase
319	 42.09	-1	399955..400947	+	330	123440722	tdcB	YE0336	-	threonine dehydratase
320	 42.59	-1	400972..402300	+	442	123440723	tdcC	YE0337	-	threonine/serine transporter TdcC
321	 48.61	0	402319..403575	+	418	123440724	tdcD	YE0338	-	propionate/acetate kinase
322	 48.89	0	403626..405920	+	764	123440725	tdcE	YE0339	-	keto-acid formate acetyltransferase
323	 44.87	0	406326..406637	-	103	123440726	-	YE0340	-	hypothetical protein
324	 51.94	0	406648..407421	-	257	123440727	-	YE0341	-	putative dehydrogenase/reductase
325	 51.78	0	407491..408471	-	326	123440728	-	YE0342	-	putative aldo/keto reductase
326	 50.11	0	408604..409497	+	297	123440729	-	YE0343	-	LysR family transcriptional regulator
327	 48.09	0	411687..412262	-	191	123440730	-	YE0346	-	putative transcriptional regulator
328	 52.58	+1	412574..413737	+	387	123440731	glxK	YE0347	-	putative glycerate kinase
329	 52.62	+1	413785..415521	-	578	123440732	dipZ	YE0348	-	thiol:disulfide interchange protein precursor
330	 51.16	0	415497..415799	-	100	123440733	-	YE0349	-	divalent-cation tolerance protein CutA
331	 49.23	0	416005..417306	-	433	123440734	b4138	YE0350	-	anaerobic C4-dicarboxylate transporter
332	 46.56	0	417426..418862	-	478	123440735	aspA	YE0351	-	aspartate ammonia-lyase
333	 44.51	0	419304..419831	+	175	123440736	-	YE0352	-	FxsA
334	 47.62	0	420084..420377	+	97	123440737	groES	YE0353	-	co-chaperonin GroES
335	 50.33	0	420434..422086	+	550	123440738	groEL	YE0354	-	chaperonin GroEL
336	 48.97	0	422468..422806	+	112	123440739	-	YE0355	-	putative lipoprotein
337	 49.90	0	422874..423911	-	345	123440740	-	YE0356	-	hypothetical protein
338	 48.50	0	423947..424513	+	188	123440741	b4147	YE0357	-	elongation factor P
339	 40.15	-1	424699..424830	+	43	123440742	ecnB	YE0358	-	entericidin B precursor
340	 50.16	0	425009..425323	+	104	123440743	sugE	YE0359	-	quaternary ammonium compound-resistance protein SugE
341	 45.93	0	425325..425864	-	179	123440744	-	YE0360	-	outer membrane lipoprotein Blc
342	 51.54	0	426013..426369	-	118	123440745	b4151	YE0361	-	fumarate reductase subunit D
343	 47.58	0	426386..426778	-	130	123440746	b4152	YE0362	-	fumarate reductase subunit C
344	 49.25	0	426795..427529	-	244	123440747	b4153	YE0363	-	fumarate reductase iron-sulfur subunit
345	 52.63	+1	427522..429345	-	607	123440748	b4154	YE0364	-	fumarate reductase flavoprotein subunit
346	 51.12	0	429789..430766	+	325	123440749	b4155	YE0365	-	lysyl-tRNA synthetase
347	 52.09	0	430861..434091	-	1076	123440750	-	YE0366	-	hypothetical protein
348	 50.57	0	434261..435142	-	293	123440751	psd	YE0367	-	phosphatidylserine decarboxylase
349	 50.52	0	435251..436303	-	350	123440752	-	YE0368	-	ribosome-associated GTPase
350	 48.35	0	436481..437026	+	181	123440753	b4162	YE0369	-	oligoribonuclease
351	 50.56	0	438071..439225	-	384	123440754	-	YE0371	-	putative iron-sulfur cluster-binding protein
352	 52.28	0	439224..440738	+	504	123440755	-	YE0372	-	hypothetical protein
353	 53.29	+1	440749..441219	+	156	123440756	-	YE0373	-	putative ATPase
354	 51.32	0	441320..443182	+	620	123440757	-	YE0374	-	putative N-acetylmuramoyl-L-alanine amidase-family protein
355	 51.36	0	443198..445105	+	635	123440758	mutL	YE0375	-	DNA mismatch repair protein
356	 50.21	0	445098..446039	+	313	123440759	miaA	YE0376	-	tRNA delta(2)-isopentenylpyrophosphate transferase
357	 45.75	0	446155..446460	+	101	123440760	hfq	YE0377	-	RNA-binding protein Hfq
358	 49.54	0	446559..447860	+	433	123440761	hflX	YE0378	-	putative GTPase HflX
359	 49.80	0	448234..449241	+	335	123440762	-	YE0379	-	hypothetical protein
360	 50.75	0	449245..450249	+	334	123440763	-	YE0380	-	FtsH protease regulator HflC
361	 49.25	0	450388..450588	+	66	123440764	-	YE0381	-	hypothetical protein
362	 50.89	0	450688..451986	+	432	123440765	adeK	YE0382	-	adenylosuccinate synthetase
363	 45.54	0	452266..452691	+	141	123440766	-	YE0383	-	transcriptional repressor NsrR
364	 52.45	+1	452871..455417	+	848	123440767	rnr	YE0384	-	exoribonuclease R
365	 52.36	0	455489..456229	+	246	123440768	-	YE0385	-	23S rRNA (guanosine-2'-O-)-methyltransferase
366	 51.95	0	456561..458204	+	547	123440769	aidB	YE0386	-	isovaleryl CoA dehydrogenase
367	 47.57	0	458229..458537	-	102	123440770	-	YE0387	-	putative lipoprotein
368	 52.00	0	458723..459472	+	249	123440771	-	YE0388	-	esterase
369	 48.26	0	459557..459844	-	95	123440772	-	YE0389	-	hypothetical protein
370	 50.89	0	460435..460827	+	130	123440773	rpsF	YE0392	-	30S ribosomal protein S6
371	 47.98	0	460832..461152	+	106	123440774	priB	YE0393	-	primosomal replication protein N
372	 47.81	0	461157..461384	+	75	123440775	rpsR	YE0394	-	30S ribosomal protein S18
373	 50.77	0	461424..461876	+	150	123440776	rplI	YE0395	-	50S ribosomal protein L9
374	 44.22	0	461952..462401	-	149	123440777	-	YE0396	-	hypothetical protein
375	 50.78	0	462544..463317	-	257	123440778	-	YE0397	-	hypothetical protein
376	 51.05	0	463604..464224	+	206	123440779	fklB	YE0398	-	peptidyl-prolyl cis-trans isomerase
377	 47.82	0	464296..466269	-	657	123440780	cpdB	YE0399	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
378	 53.63	+1	466745..467488	+	247	123440781	amtA	YE0400	-	PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
379	 48.40	0	467491..468054	-	187	123440782	-	YE0401	-	hypothetical protein
380	 42.16	-1	468378..468581	+	67	123440783	-	YE0402	-	hypothetical protein
381	 46.85	0	468666..469997	-	443	123440784	-	YE0403	-	hypothetical protein
382	 51.80	0	470285..470923	-	212	123440785	msrA	YE0404	-	methionine sulfoxide reductase A
383	 51.85	0	471364..473064	+	566	123440786	-	YE0405	-	hypothetical protein
384	 51.98	0	473166..476945	+	1259	123440787	-	YE0406	-	hypothetical protein
385	 44.90	0	476948..477310	+	120	123440788	-	YE0407	-	hypothetical protein
386	 48.48	0	477569..478096	-	175	123440789	ppa	YE0408	-	inorganic pyrophosphatase
387	 47.00	0	478386..479966	+	526	123440790	-	YE0409	-	methyl-accepting chemotaxis protein
388	 47.24	0	480178..481191	-	337	123440791	fbp	YE0410	-	fructose-1,6-bisphosphatase
389	 49.35	0	481361..482746	+	461	123440792	mpl	YE0411	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diaminopimelate ligase
390	 44.32	0	483000..483263	-	87	123440793	-	YE0412	-	hypothetical protein
391	 45.65	0	483677..484147	-	156	123440794	argR	YE0413	-	arginine repressor
392	 46.90	0	484611..485546	+	311	123440795	mdh	YE0414	-	malate dehydrogenase
393	 48.35	0	486490..487461	-	323	123440796	cel	YE0417	-	octaprenyl diphosphate synthase
394	 46.79	0	487721..488032	+	103	123440797	rplU	YE0418	-	50S ribosomal protein L21
395	 47.67	0	488052..488309	+	85	123440798	rpmA	YE0419	-	50S ribosomal protein L27
396	 49.27	0	488397..489356	+	319	123440799	-	YE0420	-	hypothetical protein
397	 47.83	0	489388..490560	+	390	123440800	obgE	YE0421	-	GTPase ObgE
398	 48.59	0	490664..491725	-	353	123440801	basS	YE0422	-	sensor protein BasS/PmrB
399	 50.91	0	491725..492384	-	219	123440802	basR	YE0423	-	DNA-binding transcriptional regulator BasR
400	 48.52	0	492390..493838	-	482	123440803	dacB	YE0424	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
401	 42.14	-1	494097..494573	+	158	123440804	greA	YE0425	-	transcription elongation factor GreA
402	 45.92	0	494702..494995	-	97	123440805	-	YE0426	-	hypothetical protein
403	 46.67	0	495142..495771	+	209	123440806	rrmJ	YE0427	-	23S rRNA methyltransferase J
404	 48.63	0	495828..497762	+	644	123440807	hflB	YE0428	-	ATP-dependent metalloprotease
405	 49.16	0	497847..498680	+	277	123440808	folP	YE0429	-	dihydropteroate synthase
406	 49.29	0	498690..500030	+	446	123440809	glmM	YE0430	-	phosphoglucosamine mutase
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.