IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.74   STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3207	 51.33	0	3730171..3732165	-	664	123443610	tkt	YE3416	-	transketolase
3208	 49.80	0	3732460..3733212	+	250	123443611	-	YE3417	-	putative lipoprotein
3209	 47.98	0	3733285..3733605	-	106	123443612	-	YE3418	-	putative Rieske protein
3210	 49.90	0	3733933..3735912	-	659	123443613	speA	YE3419	-	arginine decarboxylase
3211	 49.09	0	3736915..3738069	+	384	123443614	metK	YE3421	-	S-adenosylmethionine synthetase
3212	 51.19	0	3738135..3738554	-	139	123443615	-	YE3422	-	hypothetical protein
3213	 49.77	0	3738571..3739002	-	143	123443616	-	YE3422A	-	hypothetical protein
3214	 48.69	0	3738999..3739304	-	101	123443617	-	YE3423	-	transcription regulator ArsR
3215	 48.15	0	3739455..3739967	+	170	123443618	-	YE3424	-	hypothetical protein
3216	 48.59	0	3740064..3740771	+	235	123443619	endA	YE3425	-	endonuclease I
3217	 50.96	0	3740817..3741548	+	243	123443620	-	YE3426	-	hypothetical protein
3218	 50.42	0	3741574..3742527	+	317	123443621	gsh-II	YE3427	-	glutathione synthetase
3219	 47.87	0	3742839..3743402	+	187	123443622	-	YE3428	-	hypothetical protein
3220	 53.66	+1	3743402..3743824	+	140	123443623	-	YE3429	-	Holliday junction resolvase-like protein
3221	 49.94	0	3744006..3744890	+	294	123443624	-	YE3430	-	putative carbon-nitrogen hydrolase
3222	 51.67	0	3744972..3746018	+	348	123443625	-	YE3431	-	agmatine deiminase
3223	 48.53	0	3746333..3747385	-	350	123443626	-	YE3432	-	hypothetical protein
3224	 51.58	0	3747486..3748181	+	231	123443627	-	YE3433	-	hypothetical protein
3225	 48.91	0	3748217..3749038	+	273	123443628	proC	YE3434	-	pyrroline-5-carboxylate reductase
3226	 49.37	0	3749167..3749721	+	184	123443629	yggT	YE3435	-	hypothetical protein
3227	 50.17	0	3749718..3750008	+	96	123443630	-	YE3436	-	hypothetical protein
3228	 53.03	+1	3750245..3750838	+	197	123443631	-	YE3437	-	putative deoxyribonucleotide triphosphate pyrophosphatase
3229	 50.04	0	3750831..3751961	+	376	123443632	-	YE3438	-	coproporphyrinogen III oxidase
3230	 49.53	0	3752051..3752791	-	246	123443633	-	YE3439	-	hypothetical protein
3231	 50.50	0	3752894..3753796	-	300	123443634	-	YE3440	-	glutaminase
3232	 44.65	0	3753950..3754276	-	108	123443635	-	YE3441	-	hypothetical protein
3233	 51.11	0	3754276..3754995	-	239	123443636	trmB	YE3442	-	tRNA (guanine-N(7))-methyltransferase
3234	 49.77	0	3755473..3756561	+	362	123443637	mutB	YE3443	-	adenine DNA glycosylase
3235	 39.19	-1	3756626..3756898	+	90	123443638	-	YE3444	-	hypothetical protein
3236	 44.26	0	3757024..3758112	+	362	123443639	mltC	YE3445	-	murein transglycosylase C
3237	 42.27	-1	3758283..3759032	+	249	123443640	-	YE3446	-	hypothetical protein
3238	 44.52	0	3759101..3761263	-	720	123443641	speC	YE3447	-	ornithine decarboxylase
3239	 42.07	-1	3762254..3763237	-	327	123443642	-	YE3450	-	phage integrase
3240	 50.29	0	3763267..3764463	-	398	123443643	-	YE3451	-	hypothetical protein
3241	 57.68	+2	3764827..3765171	+	114	123443644	-	YE3452	-	hypothetical protein
3242	 37.72	-2	3765220..3765561	-	113	123443645	-	YE3453	-	hypothetical protein
3243	 52.23	0	3765558..3767960	-	800	123443646	-	YE3454	-	putative hemolysin
3244	 45.47	0	3769251..3769835	+	194	123443647	-	YE3457	-	hypothetical protein
3245	 49.17	0	3769900..3770802	-	300	123443648	-	YE3458	-	hypothetical protein
3246	 43.40	0	3770903..3771190	-	95	123443649	-	YE3459	-	hypothetical protein
3247	 48.20	0	3771187..3772188	-	333	123443650	-	YE3460	-	hypothetical protein
3248	 43.92	0	3772593..3773480	-	295	123443651	-	YE3461	-	putative phage integrase
3249	 39.34	-1	3775095..3776192	+	365	123443652	-	YE3462	-	hypothetical protein
3250	 33.74	-2	3776189..3777172	+	327	123443653	-	YE3463	-	hypothetical protein
3251	 40.15	-1	3777495..3777758	+	87	123443654	-	YE3464	-	hypothetical protein
3252	 49.90	0	3777818..3779338	-	506	123443655	-	YE3465	-	hypothetical protein
3253	 53.09	+1	3779338..3780744	-	468	123443656	-	YE3466	-	hypothetical protein
3254	 51.78	0	3780765..3781718	-	317	123443657	-	YE3467	-	hypothetical protein
3255	 48.87	0	3781715..3782068	-	117	123443658	-	YE3468	-	hypothetical protein
3256	 47.18	0	3783946..3784299	+	117	123443659	arsR2	YE3472	-	DNA-binding transcriptional repressor ArsR
3257	 50.41	0	3784346..3784708	+	120	123443660	arsD	YE3472A	-	arsenical resistance operon trans-acting repressor
3258	 53.60	+1	3784726..3786477	+	583	123443661	arsA2	YE3473	-	arsenical pump-driving ATPase
3259	 52.87	+1	3786526..3787815	+	429	123443662	arsB2	YE3474	-	arsenical pump membrane protein
3260	 50.23	0	3787828..3788253	+	141	123443663	arsC2	YE3475	-	arsenate reductase
3261	 44.39	0	3788299..3789492	-	397	123443664	tpn1330	YE3476	-	transposase for IS1330
3262	 48.38	0	3789694..3790404	-	236	123443665	arsH	YE3477	-	putative arsenic resistance protein
3263	 44.22	0	3790536..3790829	-	97	123443666	-	YE3478	-	hypothetical protein
3264	 46.83	0	3790936..3792069	+	377	123443667	-	YE3479	-	putative membrane transport protein
3265	 47.94	0	3792208..3792522	-	104	123443668	ccdB	YE3480	-	cytotoxic protein
3266	 47.68	0	3792525..3792761	-	78	123443669	ccdA	YE3481	-	gyrase inhibitor antitoxin
3267	 51.31	0	3793238..3795880	-	880	123443670	-	YE3482	-	hypothetical protein
3268	 52.10	0	3796042..3796446	-	134	123443671	-	YE3483	-	putative lipoprotein
3269	 51.37	0	3796456..3797913	-	485	123443672	-	YE3484	-	hypothetical protein
3270	 52.13	0	3797961..3798827	-	288	123443673	-	YE3485	-	hypothetical protein
3271	 49.08	0	3798824..3799477	-	217	123443674	-	YE3486	-	hypothetical protein
3272	 50.67	0	3799474..3799848	-	124	123443675	-	YE3487	-	putative inner membrane protein
3273	 46.15	0	3799858..3800208	-	116	123443676	-	YE3488	-	hypothetical protein
3274	 50.20	0	3800224..3800472	-	82	123443677	-	YE3489	-	hypothetical protein
3275	 53.07	+1	3800469..3800777	-	102	123443678	-	YE3490	-	hypothetical protein
3276	 49.80	0	3801682..3802434	-	250	123443679	-	YE3492	-	putative inner membrane protein
3277	 51.96	0	3802434..3804554	-	706	123443680	-	YE3493	-	TraG-family protein
3278	 52.73	+1	3804740..3805234	-	164	123443681	-	YE3494	-	hypothetical protein
3279	 49.73	0	3805258..3805806	-	182	123443682	-	YE3494A	-	hypothetical protein
3280	 50.13	0	3805875..3806642	-	255	123443683	-	YE3495	-	hypothetical protein
3281	 47.99	0	3806785..3807132	-	115	123443684	-	YE3495A	-	hypothetical protein
3282	 45.10	0	3807111..3807365	-	84	123443685	-	YE3496	-	hypothetical protein
3283	 38.10	-2	3807520..3807876	+	118	123443686	-	YE3496A	-	putative DNA-binding protein
3284	 45.60	0	3808031..3808951	-	306	123443687	-	YE3497	-	putative transposase
3285	 49.30	0	3809045..3810322	-	425	123443688	-	YE3498	-	putative type IV pilus protein
3286	 50.67	0	3810326..3810994	-	222	123443689	-	YE3499	-	type IV prepilin peptidase
3287	 49.32	0	3810991..3811578	-	195	123443690	-	YE3500	-	putative type IV prepilin
3288	 51.71	0	3811593..3812702	-	369	123443691	-	YE3501	-	type IV pilus integral membrane protein
3289	 51.22	0	3812695..3814248	-	517	123443692	-	YE3502	-	putative type IV pilus protein
3290	 50.42	0	3814257..3814736	-	159	123443693	-	YE3502A	-	putative type IV pilus protein
3291	 48.55	0	3814723..3816030	-	435	123443694	-	YE3503	-	putative type IV pilus protein
3292	 50.56	0	3816033..3817721	-	562	123443695	-	YE3504	-	putative type IV pilus operon lipoprotein
3293	 52.51	+1	3817733..3818170	-	145	123443696	-	YE3505	-	putative type IV pilus operon exported poprotein
3294	 49.13	0	3818172..3819146	-	324	123443697	-	YE3506	-	putative type IV pilus operon lipoprotein
3295	 47.69	0	3819341..3819772	-	143	123443698	-	YE3507	-	hypothetical protein
3296	 44.34	0	3819884..3820201	-	105	123443699	-	YE3508	-	hypothetical protein
3297	 45.86	0	3820501..3821043	-	180	123443700	-	YE3509	-	hypothetical protein
3298	 47.83	0	3821333..3822091	-	252	123443701	-	YE3510	-	hypothetical protein
3299	 48.88	0	3822260..3823462	-	400	123443702	-	YE3511	-	hypothetical protein
3300	 48.42	0	3823568..3824137	-	189	123443703	-	YE3512	-	hypothetical protein
3301	 47.20	0	3824134..3825720	-	528	123443704	-	YE3513	-	putative ATP/GTP binding protein
3302	 49.71	0	3825720..3827087	-	455	123443705	dnaB2	YE3514	-	putative DNA helicase
3303	 45.69	0	3827080..3827961	-	293	123443706	-	YE3515	-	hypothetical protein
3304	 39.81	-1	3829378..3829686	-	102	123443707	-	YE3518	-	hypothetical protein
3305	 36.31	-2	3829958..3830125	+	55	123443708	-	YE3519	-	hypothetical protein
3306	 44.93	0	3830294..3831526	-	410	123443709	-	YE3520	-	hypothetical protein
47.74	MEAN

4.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.