IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3160	 48.12	0	3677085..3677510	-	141	123443563	arsC	YE3364	-	arsenate reductase
3161	 51.40	0	3677524..3678813	-	429	123443564	arsB	YE3365	-	arsenical pump membrane protein
3162	 52.14	0	3679048..3679398	-	116	123443565	arsR	YE3366	-	DNA-binding transcriptional repressor ArsR
3163	 44.79	0	3679643..3680785	-	380	123443566	-	YE3367	-	hypothetical protein
3164	 39.08	-1	3681131..3681565	+	144	123443567	-	YE3368	-	hypothetical protein
3165	 51.06	0	3681558..3681698	+	46	123443568	-	YE3369	-	hypothetical protein
3166	 46.78	0	3682136..3682477	-	113	123443569	-	YE3370	-	putative inner membrane protein
3167	 45.13	0	3682624..3683301	-	225	123443570	-	YE3371	-	hypothetical protein
3168	 42.92	-1	3684016..3685632	-	538	123443571	-	YE3373	-	putative integrase
3169	 48.42	0	3686176..3687693	-	505	123443572	lysS	YE3374	-	lysyl-tRNA synthetase
3170	 47.41	0	3687703..3688801	-	365	123443573	prfB	YE3376	-	peptide chain release factor 2
3171	 52.83	+1	3689253..3690986	-	577	123443574	recJ	YE3378	-	ssDNA exonuclease RecJ
3172	 45.47	0	3690993..3691709	-	238	123443575	dsbC	YE3379	-	thiol:disulfide interchange protein DsbC
3173	 50.78	0	3691758..3692657	-	299	123443576	xerD	YE3380	-	site-specific tyrosine recombinase XerD
3174	 46.55	0	3692763..3693284	+	173	123443577	fldB	YE3381	-	flavodoxin FldB
3175	 48.24	0	3693343..3694764	-	473	123443578	creD	YE3382	-	hypothetical protein
3176	 50.98	0	3694856..3696283	-	475	123443579	creC	YE3383	-	sensory histidine kinase CreC
3177	 51.50	0	3696294..3696992	-	232	123443580	blrA	YE3384	-	DNA-binding response regulator CreB
3178	 50.70	0	3696992..3697417	-	141	123443581	-	YE3385	-	hypothetical protein
3179	 45.32	0	3697398..3697664	-	88	123443582	-	YE3386	-	hypothetical protein
3180	 50.96	0	3698059..3699051	+	330	123443583	-	YE3387	-	putative global regulator
3181	 47.64	0	3699105..3699677	-	190	123443584	-	YE3388	-	putative hemolysin III
3182	 49.75	0	3700019..3700621	+	200	123443585	-	YE3389	-	hypothetical protein
3183	 43.15	0	3700807..3701244	-	145	123443586	-	YE3390	-	hypothetical protein
3184	 52.19	0	3701556..3704435	-	959	123443587	gcvP	YE3391	-	glycine dehydrogenase
3185	 49.10	0	3704636..3705022	-	128	123443588	gcsH	YE3392	-	glycine cleavage system protein H
3186	 51.28	0	3705089..3706186	-	365	123443589	gcvT	YE3393	-	glycine cleavage system aminomethyltransferase T
3187	 53.58	+1	3706695..3707909	-	404	123443590	visC	YE3394	-	hypothetical protein
3188	 54.53	+1	3707997..3709166	-	389	123443591	ubiH	YE3395	-	2-octaprenyl-6-methoxyphenyl hydroxylase
3189	 51.07	0	3709170..3710483	-	437	123443592	pepP	YE3396	-	proline aminopeptidase P II
3190	 48.53	0	3710538..3711116	-	192	123443593	-	YE3397	-	hypothetical protein
3191	 43.94	0	3711500..3711829	+	109	123443594	-	YE3398	-	Z-ring-associated protein
3192	 48.91	0	3712268..3712864	+	198	123443595	-	YE3399	-	putative 5-formyltetrahydrofolate cyclo-ligase-family protein
3193	 48.55	0	3712960..3714201	-	413	123443596	serA	YE3400	-	D-3-phosphoglycerate dehydrogenase
3194	 46.15	0	3714515..3715177	-	220	123443597	rpiA	YE3401	-	ribose-5-phosphate isomerase A
3195	 52.80	+1	3715398..3716291	+	297	123443598	iciA	YE3402	-	chromosome replication initiation inhibitor protein
3196	 47.88	0	3716293..3717048	-	251	123443599	yggE	YE3403	-	hypothetical protein
3197	 53.24	+1	3717259..3717876	-	205	123443600	yggA	YE3405	-	arginine exporter protein
3198	 47.47	0	3718184..3719053	-	289	123443601	-	YE3406	-	hypothetical protein
3199	 52.93	+1	3719323..3720792	-	489	123443602	-	YE3407	-	transposase for IS1668
3200	 31.40	-2	3721000..3722502	-	500	123443603	-	YE3408	-	hypothetical protein
3201	 35.86	-2	3723246..3723641	-	131	123443604	traM	YE3409	-	conjugal transfer protein TraM
3202	 41.78	-1	3724129..3724566	+	145	123443605	-	YE3411	-	hypothetical protein
3203	 53.06	+1	3724618..3726087	-	489	123443606	-	YE3412	-	transposase for IS1668
3204	 48.06	0	3726210..3727289	-	359	123443607	fba	YE3413	-	fructose-bisphosphate aldolase
3205	 49.83	0	3727548..3728711	-	387	123443608	pgk	YE3414	-	phosphoglycerate kinase
3206	 48.57	0	3728815..3729831	-	338	123443609	epd	YE3415	-	erythrose 4-phosphate dehydrogenase
3207	 51.33	0	3730171..3732165	-	664	123443610	tkt	YE3416	-	transketolase
3208	 49.80	0	3732460..3733212	+	250	123443611	-	YE3417	-	putative lipoprotein
3209	 47.98	0	3733285..3733605	-	106	123443612	-	YE3418	-	putative Rieske protein
3210	 49.90	0	3733933..3735912	-	659	123443613	speA	YE3419	-	arginine decarboxylase
3211	 49.09	0	3736915..3738069	+	384	123443614	metK	YE3421	-	S-adenosylmethionine synthetase
3212	 51.19	0	3738135..3738554	-	139	123443615	-	YE3422	-	hypothetical protein
3213	 49.77	0	3738571..3739002	-	143	123443616	-	YE3422A	-	hypothetical protein
3214	 48.69	0	3738999..3739304	-	101	123443617	-	YE3423	-	transcription regulator ArsR
3215	 48.15	0	3739455..3739967	+	170	123443618	-	YE3424	-	hypothetical protein
3216	 48.59	0	3740064..3740771	+	235	123443619	endA	YE3425	-	endonuclease I
3217	 50.96	0	3740817..3741548	+	243	123443620	-	YE3426	-	hypothetical protein
3218	 50.42	0	3741574..3742527	+	317	123443621	gsh-II	YE3427	-	glutathione synthetase
3219	 47.87	0	3742839..3743402	+	187	123443622	-	YE3428	-	hypothetical protein
3220	 53.66	+1	3743402..3743824	+	140	123443623	-	YE3429	-	Holliday junction resolvase-like protein
3221	 49.94	0	3744006..3744890	+	294	123443624	-	YE3430	-	putative carbon-nitrogen hydrolase
3222	 51.67	0	3744972..3746018	+	348	123443625	-	YE3431	-	agmatine deiminase
3223	 48.53	0	3746333..3747385	-	350	123443626	-	YE3432	-	hypothetical protein
3224	 51.58	0	3747486..3748181	+	231	123443627	-	YE3433	-	hypothetical protein
3225	 48.91	0	3748217..3749038	+	273	123443628	proC	YE3434	-	pyrroline-5-carboxylate reductase
3226	 49.37	0	3749167..3749721	+	184	123443629	yggT	YE3435	-	hypothetical protein
3227	 50.17	0	3749718..3750008	+	96	123443630	-	YE3436	-	hypothetical protein
3228	 53.03	+1	3750245..3750838	+	197	123443631	-	YE3437	-	putative deoxyribonucleotide triphosphate pyrophosphatase
3229	 50.04	0	3750831..3751961	+	376	123443632	-	YE3438	-	coproporphyrinogen III oxidase
3230	 49.53	0	3752051..3752791	-	246	123443633	-	YE3439	-	hypothetical protein
3231	 50.50	0	3752894..3753796	-	300	123443634	-	YE3440	-	glutaminase
3232	 44.65	0	3753950..3754276	-	108	123443635	-	YE3441	-	hypothetical protein
3233	 51.11	0	3754276..3754995	-	239	123443636	trmB	YE3442	-	tRNA (guanine-N(7))-methyltransferase
3234	 49.77	0	3755473..3756561	+	362	123443637	mutB	YE3443	-	adenine DNA glycosylase
3235	 39.19	-1	3756626..3756898	+	90	123443638	-	YE3444	-	hypothetical protein
3236	 44.26	0	3757024..3758112	+	362	123443639	mltC	YE3445	-	murein transglycosylase C
3237	 42.27	-1	3758283..3759032	+	249	123443640	-	YE3446	-	hypothetical protein
3238	 44.52	0	3759101..3761263	-	720	123443641	speC	YE3447	-	ornithine decarboxylase
3239	 42.07	-1	3762254..3763237	-	327	123443642	-	YE3450	-	phage integrase
3240	 50.29	0	3763267..3764463	-	398	123443643	-	YE3451	-	hypothetical protein
3241	 57.68	+2	3764827..3765171	+	114	123443644	-	YE3452	-	hypothetical protein
3242	 37.72	-2	3765220..3765561	-	113	123443645	-	YE3453	-	hypothetical protein
3243	 52.23	0	3765558..3767960	-	800	123443646	-	YE3454	-	putative hemolysin
3244	 45.47	0	3769251..3769835	+	194	123443647	-	YE3457	-	hypothetical protein
3245	 49.17	0	3769900..3770802	-	300	123443648	-	YE3458	-	hypothetical protein
3246	 43.40	0	3770903..3771190	-	95	123443649	-	YE3459	-	hypothetical protein
3247	 48.20	0	3771187..3772188	-	333	123443650	-	YE3460	-	hypothetical protein
3248	 43.92	0	3772593..3773480	-	295	123443651	-	YE3461	-	putative phage integrase
3249	 39.34	-1	3775095..3776192	+	365	123443652	-	YE3462	-	hypothetical protein
3250	 33.74	-2	3776189..3777172	+	327	123443653	-	YE3463	-	hypothetical protein
3251	 40.15	-1	3777495..3777758	+	87	123443654	-	YE3464	-	hypothetical protein
3252	 49.90	0	3777818..3779338	-	506	123443655	-	YE3465	-	hypothetical protein
3253	 53.09	+1	3779338..3780744	-	468	123443656	-	YE3466	-	hypothetical protein
3254	 51.78	0	3780765..3781718	-	317	123443657	-	YE3467	-	hypothetical protein
3255	 48.87	0	3781715..3782068	-	117	123443658	-	YE3468	-	hypothetical protein
3256	 47.18	0	3783946..3784299	+	117	123443659	arsR2	YE3472	-	DNA-binding transcriptional repressor ArsR
3257	 50.41	0	3784346..3784708	+	120	123443660	arsD	YE3472A	-	arsenical resistance operon trans-acting repressor
3258	 53.60	+1	3784726..3786477	+	583	123443661	arsA2	YE3473	-	arsenical pump-driving ATPase
3259	 52.87	+1	3786526..3787815	+	429	123443662	arsB2	YE3474	-	arsenical pump membrane protein
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.