IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2937	 48.62	0	3405712..3408066	-	784	123443340	capR	YE3132	-	DNA-binding ATP-dependent protease La
2938	 47.64	0	3408261..3409532	-	423	123443341	clpX	YE3133	-	ATP-dependent protease ATP-binding subunit
2939	 46.31	0	3409738..3410361	-	207	123443342	clpP	YE3134	-	ATP-dependent Clp protease proteolytic subunit
2940	 46.90	0	3410818..3412122	-	434	123443343	tig	YE3135	-	trigger factor
2941	 49.28	0	3412077..3412352	-	91	123443344	-	YE3136	-	hypothetical protein
2942	 45.65	0	3412538..3412870	-	110	123443345	bolA	YE3137	-	transcriptional regulator BolA
2943	 46.98	0	3413221..3413799	+	192	123443346	yajG	YE3138	-	hypothetical protein
2944	 47.80	0	3413877..3415355	+	492	123443347	ampG	YE3139	-	muropeptide transporter
2945	 44.87	0	3415620..3416399	+	259	123443348	yfeN	YE3140	-	hypothetical protein
2946	 45.25	0	3416762..3417718	+	318	123443349	cyoA	YE3141	-	cytochrome o ubiquinol oxidase subunit II
2947	 50.10	0	3417723..3419714	+	663	123443350	cyoB	YE3142	-	cytochrome O ubiquinol oxidase subunit I
2948	 49.92	0	3419704..3420318	+	204	123443351	cyoC	YE3143	-	cytochrome o ubiquinol oxidase subunit III
2949	 45.83	0	3420378..3420665	+	95	123443352	cyoD	YE3144	-	cytochrome O ubiquinol oxidase subunit CyoD
2950	 46.02	0	3420676..3421566	+	296	123443353	cyoE	YE3145	-	protoheme IX farnesyltransferase
2951	 49.82	0	3421737..3423107	+	456	123443354	yajR	YE3146	-	putative transporter
2952	 47.36	0	3423161..3423652	-	163	123443355	-	YE3147	-	nucleotide-binding protein
2953	 48.94	0	3423827..3424108	+	93	123443356	-	YE3148	-	hypothetical protein
2954	 49.67	0	3423990..3424901	+	303	123443357	apbA	YE3149	-	2-dehydropantoate 2-reductase
2955	 50.42	0	3424864..3425460	+	198	123443358	thiJ	YE3150	-	hypothetical protein
2956	 46.83	0	3425622..3427073	-	483	123443359	thiI	YE3151	-	thiamine biosynthesis protein ThiI
2957	 52.55	+1	3427349..3427603	+	84	123443360	xseB	YE3153	-	exodeoxyribonuclease VII small subunit
2958	 52.33	0	3427608..3428528	+	306	123443361	ispA	YE3154	-	geranyltranstransferase
2959	 50.05	0	3428582..3430441	+	619	123443362	b0420	YE3155	-	1-deoxy-D-xylulose-5-phosphate synthase
2960	 50.51	0	3430443..3430931	-	162	123443363	-	YE3156	-	hypothetical protein
2961	 48.39	0	3430950..3431447	-	165	123443364	pgpA	YE3157	-	phosphatidylglycerophosphatase A
2962	 50.00	0	3431440..3432429	-	329	123443365	thiL	YE3158	-	thiamine monophosphate kinase
2963	 50.12	0	3432509..3432925	-	138	123443366	nusB	YE3159	-	transcription antitermination protein NusB
2964	 47.98	0	3432951..3433421	-	156	123443367	ribH	YE3160	-	riboflavin synthase subunit beta
2965	 54.14	+1	3433556..3434665	-	369	123443368	ribD	YE3161	-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
2966	 49.56	0	3434730..3435179	-	149	123443369	-	YE3162	-	transcriptional regulator NrdR
2967	 48.71	0	3435444..3436412	-	322	123443370	secF	YE3163	-	preprotein translocase subunit SecF
2968	 49.57	0	3436423..3438270	-	615	123443371	secD	YE3164	-	preprotein translocase subunit SecD
2969	 44.74	0	3438298..3438630	-	110	123443372	yajC	YE3165	-	preprotein translocase subunit YajC
2970	 47.58	0	3438743..3439879	-	378	123443373	tgt	YE3166	-	queuine tRNA-ribosyltransferase
2971	 50.79	0	3440614..3440928	+	104	123443374	-	YE3169	-	IS1669 hypothetical protein
2972	 51.25	0	3440946..3441743	+	265	123443375	-	YE3170	-	putative transposase for insertion element IS1669
2973	 49.22	0	3442296..3443384	-	362	123443376	queA	YE3172	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2974	 48.11	0	3443527..3444108	+	193	123443377	-	YE3173	-	hypothetical protein
2975	 48.59	0	3444333..3444935	+	200	123443378	ahpC	YE3174	-	putative alkyl hydroperoxide reductase subunit c
2976	 49.55	0	3445681..3447444	+	587	123443379	ggt	YE3175	-	gamma-glutamyltranspeptidase precursor
2977	 49.63	0	3447512..3448192	-	226	123443380	-	YE3176	-	short chain dehydrogenase
2978	 50.03	0	3448526..3450364	-	612	123443381	malZ	YE3177	-	maltodextrin glucosidase
2979	 48.42	0	3450729..3452120	-	463	123443382	proY	YE3178	-	putative proline-specific permease
2980	 51.52	0	3452196..3453515	-	439	123443383	brnQ	YE3179	-	branched-chain amino acid transport system II carrier protein
2981	 48.82	0	3454879..3456195	-	438	123443384	phoR	YE3181	-	phosphate regulon sensor protein
2982	 48.84	0	3456220..3456909	-	229	123443385	phoB	YE3182	-	phosphate regulon transcriptional regulatory protein
2983	 49.31	0	3457179..3458417	+	412	123443386	sbcD	YE3183	-	exonuclease subunit SbcD
2984	 47.83	0	3458414..3462103	+	1229	123443387	sbcC	YE3184	-	exonuclease
2985	 49.84	0	3462393..3463307	-	304	123443388	-	YE3185	-	fructokinase
2986	 45.61	0	3463646..3464557	+	303	123443389	rdgC	YE3186	-	recombination associated protein
2987	 43.75	0	3464629..3464916	-	95	123443390	-	YE3187	-	hypothetical protein
2988	 50.67	0	3465400..3465924	-	174	123443391	aroL	YE3188	-	shikimate kinase II
2989	 48.60	0	3466167..3468308	-	713	123443392	-	YE3189	-	putative hydroxamate-type ferrisiderophore receptor
2990	 45.13	0	3468295..3469413	-	372	123443393	-	YE3190	-	hypothetical protein
2991	 45.52	0	3469636..3470193	-	185	123443394	-	YE3191	-	putative methyltransferase
2992	 47.04	0	3470438..3470707	-	89	123443395	-	YE3192	-	hypothetical protein
2993	 45.91	0	3470920..3471690	-	256	123443396	-	YE3193	-	hypothetical protein
2994	 42.63	-1	3471834..3472328	+	164	123443397	-	YE3194	-	acetyltransferase (GNAT) family protein
2995	 40.39	-1	3472473..3472727	-	84	123443398	-	YE3195	-	hypothetical protein
2996	 52.31	0	3472856..3481480	-	2874	123443399	-	YE3196	-	putative cyclic beta 1-2 glucan synthetase
2997	 41.07	-1	3481855..3482604	-	249	123443400	-	YE3197	-	hypothetical protein
2998	 44.82	0	3482808..3484130	-	440	123443401	aglB	YE3198	-	6-phospho-alpha-glucosidase
2999	 43.82	0	3484142..3485686	-	514	123443402	aglA	YE3199	-	PTS system, alpha-glucoside-specific IIBC component
3000	 38.96	-1	3485925..3486635	+	236	123443403	-	YE3200	-	GntR family transcription regulatory protein
3001	 50.48	0	3486704..3487963	-	419	123443404	proA	YE3201	-	gamma-glutamyl phosphate reductase
3002	 51.99	0	3487973..3489076	-	367	123443405	proB	YE3202	-	gamma-glutamyl kinase
3003	 47.51	0	3489232..3489633	-	133	123443406	crl	YE3203	-	DNA-binding transcriptional regulator Crl
3004	 48.64	0	3489693..3490940	-	415	123443407	frsA	YE3204	-	fermentation/respiration switch protein
3005	 47.93	0	3491191..3491649	-	152	123443408	gpp	YE3205	-	xanthine-guanine phosphoribosyltransferase
3006	 50.03	0	3491957..3493417	+	486	123443409	pepD	YE3206	-	aminoacyl-histidine dipeptidase
3007	 48.35	0	3493491..3494549	-	352	123443410	dinP	YE3207	-	DNA polymerase IV
3008	 48.09	0	3494652..3495044	-	130	123443411	-	YE3208	-	hypothetical protein
3009	 50.15	0	3495044..3496012	-	322	123443412	-	YE3209	-	hydroxy amino acid dehydratase
3010	 49.45	0	3496015..3496647	-	210	123443413	-	YE3210	-	hypothetical protein
3011	 43.05	0	3496761..3497861	-	366	123443414	ddlA	YE3211	-	D-alanine--D-alanine ligase A
3012	 39.29	-1	3498434..3499222	+	262	123443415	-	YE3212	-	hypothetical protein
3013	 45.18	0	3499362..3499589	-	75	123443416	-	YE3213	-	hypothetical protein
3014	 46.24	0	3499602..3500624	-	340	123443417	apbE	YE3214	-	thiamine biosynthesis lipoprotein
3015	 45.42	0	3500664..3501887	-	407	123443418	nqr6	YE3215	-	Na(+)-translocating NADH-quinone reductase subunit F
3016	 47.07	0	3501903..3502499	-	198	123443419	nqr5	YE3216	-	Na(+)-translocating NADH-quinone reductase subunit E
3017	 46.51	0	3502506..3503135	-	209	123443420	nqr4	YE3217	-	Na(+)-translocating NADH-quinone reductase subunit D
3018	 49.44	0	3503128..3503928	-	266	123443421	nqr3	YE3218	-	Na(+)-translocating NADH-quinone reductase subunit C
3019	 50.56	0	3503918..3505159	-	413	123443422	nqr2	YE3219	-	Na(+)-translocating NADH-quinone reductase subunit B
3020	 51.04	0	3505163..3506506	-	447	123443423	nqr1	YE3220	-	Na(+)-translocating NADH-quinone reductase subunit A
3021	 44.80	0	3506998..3507747	+	249	123443424	yafK	YE3221	-	hypothetical protein
3022	 48.50	0	3507721..3508485	-	254	123443425	-	YE3222	-	hypothetical protein
3023	 43.30	0	3508587..3509168	-	193	123443426	gmhA	YE3223	-	phosphoheptose isomerase
3024	 52.98	+1	3509424..3511871	+	815	123443427	fadE	YE3224	-	acyl-CoA dehydrogenase
3025	 44.41	0	3512249..3514108	-	619	123443428	rcsC	YE3225	-	putative accessory processing protein
3026	 44.45	0	3514175..3520372	-	2065	123443429	rcsA	YE3226	-	putative adhesin
3027	 45.65	0	3520413..3522206	-	597	123443430	rcsB	YE3227	-	putative surface-exposed protein
3028	 49.50	0	3522963..3524162	-	399	123443431	mtnK	YE3228	-	methylthioribose kinase
3029	 53.99	+1	3524356..3525396	+	346	123443432	mntA	YE3230	-	aldose-ketose isomerase
3030	 46.96	0	3525538..3526080	-	180	123443433	mntD	YE3231	-	dioxygenase
3031	 47.54	0	3526077..3526766	-	229	123443434	mntC	YE3232	-	bifunctional enolase-phosphatase
3032	 53.19	+1	3526763..3527452	-	229	123443435	mntB	YE3233	-	hypothetical protein
3033	 50.47	0	3527612..3528772	+	386	123443436	mntE	YE3234	-	putative aminotransferase
3034	 50.58	0	3528760..3529530	+	256	123443437	-	YE3235	-	hypothetical protein
3035	 52.92	+1	3530422..3531585	+	387	123443438	-	YE3237	-	sugar transporter
3036	 52.58	+1	3531718..3532491	+	257	123443439	-	YE3238	-	putative amino acid transporter
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.