IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
247	 44.67	0	297377..299008	+	543	123440650	ubiB	YE0258	-	putative ubiquinone biosynthesis protein UbiB
248	 43.07	0	299209..299475	+	88	123440651	b3836	YE0259	-	Sec-independent protein translocase protein TatA
249	 50.38	0	299479..300135	+	218	123440652	mtta2	YE0260	-	Sec-independent protein translocase protein TatB
250	 42.56	-1	300138..300917	+	259	123440653	mttB	YE0261	-	TatABCE protein translocation system subunit
251	 49.43	0	300973..301755	+	260	123440654	mttC	YE0262	-	DNase TatD
252	 48.09	0	301770..302792	+	340	123440655	hemB	YE0263	-	delta-aminolevulinic acid dehydratase
253	 42.74	-1	302881..303369	-	162	123440656	rfaH	YE0264	-	transcriptional activator RfaH
254	 48.76	0	303638..305134	+	498	123440657	-	YE0265	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
255	 48.43	0	305189..305890	+	233	123440658	fre	YE0266	-	FMN reductase
256	 52.41	0	305990..307153	-	387	123440659	fadA	YE0267	-	3-ketoacyl-CoA thiolase
257	 49.63	0	307165..309354	-	729	123440660	fadB	YE0268	-	multifunctional fatty acid oxidation complex subunit alpha
258	 46.67	0	309626..310975	+	449	123440661	pepQ	YE0269	-	proline dipeptidase
259	 49.24	0	311626..313077	+	483	123440662	trkH	YE0272	-	potassium transporter
260	 46.82	0	313099..313632	+	177	123440663	hemG	YE0273	-	protoporphyrinogen oxidase
261	 46.34	0	319709..320746	+	345	123440664	murB	YE0274	-	UDP-N-acetylenolpyruvoylglucosamine reductase
262	 43.23	0	320743..321702	+	319	123440665	bioR	YE0275	-	biotin--protein ligase
263	 41.96	-1	321742..322692	-	316	123440666	coaA	YE0276	-	pantothenate kinase
264	 44.93	0	322902..323453	-	183	123440667	-	YE0277	-	putative acetyltransferase
265	 48.02	0	324617..325801	+	394	123440668	tufA	YE0278	-	elongation factor Tu
266	 50.26	0	326041..326424	+	127	123440669	secE	YE0279	-	preprotein translocase subunit SecE
267	 48.35	0	326426..326971	+	181	123440670	nusG	YE0280	-	transcription antitermination protein NusG
268	 47.79	0	327165..327593	+	142	123440671	rplK	YE0281	-	50S ribosomal protein L11
269	 48.23	0	327597..328301	+	234	123440672	rplA	YE0282	-	50S ribosomal protein L1
270	 50.00	0	328676..329179	+	167	123440673	rplJ	YE0283	-	50S ribosomal protein L10
271	 46.61	0	329248..329616	+	122	123440674	rplL	YE0284	-	50S ribosomal protein L7/L12
272	 49.76	0	329960..333988	+	1342	123440675	rpoB	YE0286	-	DNA-directed RNA polymerase subunit beta
273	 51.41	0	334125..338345	+	1406	123440676	rpoC	YE0287	-	DNA-directed RNA polymerase subunit beta'
274	 55.88	+1	338397..339731	-	444	123440677	-	YE0288	-	transposase for insertion sequence element IS1660
275	 50.84	0	339869..340999	-	376	123440678	thiH	YE0289	-	thiamine biosynthesis protein ThiH
276	 52.85	+1	340992..341780	-	262	123440679	thiG	YE0290	-	thiazole synthase
277	 49.54	0	341782..341997	-	71	123440680	thiS	YE0290A	-	sulfur carrier protein ThiS
278	 52.62	+1	341994..342776	-	260	123440681	thiF	YE0291	-	thiamine biosynthesis protein
279	 52.61	+1	342760..343371	-	203	123440682	thiE	YE0292	-	thiamine-phosphate pyrophosphorylase
280	 50.34	0	343427..345313	-	628	123440683	thiC	YE0293	-	thiamine biosynthesis protein ThiC
281	 44.05	0	345825..346328	-	167	123440684	rsd	YE0295	-	anti-RNA polymerase sigma 70 factor
282	 51.53	0	346420..347205	+	261	123440685	nudC	YE0296	-	NADH pyrophosphatase
283	 50.47	0	347286..348353	+	355	123440686	hemE	YE0297	-	uroporphyrinogen decarboxylase
284	 51.63	0	348377..349081	+	234	123440687	nfi	YE0298	-	endonuclease V
285	 44.84	0	349127..349717	+	196	123440688	-	YE0299	-	hypothetical protein
286	 43.84	0	349906..350181	+	91	123440689	hupA	YE0300	-	transcriptional regulator HU subunit alpha
287	 52.42	0	350186..350887	+	233	123440690	yjaH	YE0301	-	hypothetical protein
288	 52.55	+1	350982..352277	-	431	123440691	purD	YE0302	-	phosphoribosylamine--glycine ligase
289	 51.07	0	352303..353892	-	529	123440692	purH	YE0303	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
290	 50.79	0	360392..360706	+	104	123440693	-	YE0304	-	IS1669 hypothetical protein
291	 51.25	0	360724..361521	+	265	123440694	-	YE0305	-	putative transposase for insertion element IS1669
292	 44.79	0	361779..362948	+	389	123440695	-	YE0306	-	putative hydrolase
293	 47.16	0	362987..364642	-	551	123440696	actP	YE0307	-	acetate permease
294	 45.83	0	364639..364950	-	103	123440697	-	YE0308	-	hypothetical protein
295	 48.55	0	365004..366962	-	652	123440698	acs	YE0309	-	acetyl-CoA synthetase
296	 42.92	-1	367882..369195	+	437	123440699	gltP	YE0310	-	glutamate/aspartate:proton symporter
297	 43.13	0	369338..369970	-	210	123440700	-	YE0311	-	putative two-component response regulator
298	 38.81	-1	370458..371078	+	206	123440701	-	YE0312	-	AraC family transcriptional regulator
299	 50.45	0	372183..372404	+	73	123440702	-	YE0314	-	hypothetical protein
300	 51.63	0	372693..373490	-	265	123440703	-	YE0315	-	hypothetical protein
301	 51.38	0	373868..374410	+	180	123440704	-	YE0316	-	putative DNA-binding protein
302	 52.28	0	374403..375368	+	321	123440705	-	YE0317	-	putative two-component system sensor protein
303	 51.03	0	375471..378245	+	924	123440706	-	YE0318	-	putative exported iron receptor protein
304	 51.03	0	378373..380079	+	568	123440707	-	YE0319	-	putative membrane transport protein ATP-binding component
305	 51.92	0	380064..382850	+	928	123440708	-	YE0320	-	exported Zinc protease
306	 43.25	0	382982..383233	+	83	123440709	-	YE0321	-	antitoxin YefM
307	 46.90	0	383508..386036	-	842	123440710	-	YE0322	-	putative inner-membrane transport protein
308	 48.66	0	386263..388395	+	710	123440711	foxA	YE0323	-	ferrioxamine receptor precursor
309	 50.17	0	388865..390373	+	502	123440712	-	YE0324	-	putative ATP/GTP-binding protein
310	 54.43	+1	390519..391319	-	266	123440713	hemV	YE0327	-	hemin importer ATP-binding subunit
311	 55.52	+1	391312..392316	-	334	123440714	hemU	YE0328	-	hemin transport system permease protein HmuU
312	 52.98	+1	392313..393152	-	279	123440715	hemT	YE0329	-	hemin-binding periplasmic protein
313	 48.65	0	393149..394186	-	345	123440716	hemS	YE0330	-	hemin transport protein
314	 51.94	0	394303..396366	-	687	123440717	hemR	YE0331	-	hemin receptor precursor
315	 45.93	0	396539..396784	-	81	123440718	hemP	YE0332	-	hemin uptake protein
316	 53.00	+1	396816..397466	-	216	123440719	-	YE0333	-	hypothetical protein
317	 49.27	0	397463..398008	-	181	123440720	-	YE0334	-	hypothetical protein
318	 50.08	0	398005..399318	-	437	123440721	hemN	YE0335	-	coproporphyrinogen III oxidase
319	 42.09	-1	399955..400947	+	330	123440722	tdcB	YE0336	-	threonine dehydratase
320	 42.59	-1	400972..402300	+	442	123440723	tdcC	YE0337	-	threonine/serine transporter TdcC
321	 48.61	0	402319..403575	+	418	123440724	tdcD	YE0338	-	propionate/acetate kinase
322	 48.89	0	403626..405920	+	764	123440725	tdcE	YE0339	-	keto-acid formate acetyltransferase
323	 44.87	0	406326..406637	-	103	123440726	-	YE0340	-	hypothetical protein
324	 51.94	0	406648..407421	-	257	123440727	-	YE0341	-	putative dehydrogenase/reductase
325	 51.78	0	407491..408471	-	326	123440728	-	YE0342	-	putative aldo/keto reductase
326	 50.11	0	408604..409497	+	297	123440729	-	YE0343	-	LysR family transcriptional regulator
327	 48.09	0	411687..412262	-	191	123440730	-	YE0346	-	putative transcriptional regulator
328	 52.58	+1	412574..413737	+	387	123440731	glxK	YE0347	-	putative glycerate kinase
329	 52.62	+1	413785..415521	-	578	123440732	dipZ	YE0348	-	thiol:disulfide interchange protein precursor
330	 51.16	0	415497..415799	-	100	123440733	-	YE0349	-	divalent-cation tolerance protein CutA
331	 49.23	0	416005..417306	-	433	123440734	b4138	YE0350	-	anaerobic C4-dicarboxylate transporter
332	 46.56	0	417426..418862	-	478	123440735	aspA	YE0351	-	aspartate ammonia-lyase
333	 44.51	0	419304..419831	+	175	123440736	-	YE0352	-	FxsA
334	 47.62	0	420084..420377	+	97	123440737	groES	YE0353	-	co-chaperonin GroES
335	 50.33	0	420434..422086	+	550	123440738	groEL	YE0354	-	chaperonin GroEL
336	 48.97	0	422468..422806	+	112	123440739	-	YE0355	-	putative lipoprotein
337	 49.90	0	422874..423911	-	345	123440740	-	YE0356	-	hypothetical protein
338	 48.50	0	423947..424513	+	188	123440741	b4147	YE0357	-	elongation factor P
339	 40.15	-1	424699..424830	+	43	123440742	ecnB	YE0358	-	entericidin B precursor
340	 50.16	0	425009..425323	+	104	123440743	sugE	YE0359	-	quaternary ammonium compound-resistance protein SugE
341	 45.93	0	425325..425864	-	179	123440744	-	YE0360	-	outer membrane lipoprotein Blc
342	 51.54	0	426013..426369	-	118	123440745	b4151	YE0361	-	fumarate reductase subunit D
343	 47.58	0	426386..426778	-	130	123440746	b4152	YE0362	-	fumarate reductase subunit C
344	 49.25	0	426795..427529	-	244	123440747	b4153	YE0363	-	fumarate reductase iron-sulfur subunit
345	 52.63	+1	427522..429345	-	607	123440748	b4154	YE0364	-	fumarate reductase flavoprotein subunit
346	 51.12	0	429789..430766	+	325	123440749	b4155	YE0365	-	lysyl-tRNA synthetase
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.