IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2710	 50.46	0	3150659..3151639	-	326	123443113	moaA	YE2899	-	molybdenum cofactor biosynthesis protein A
2711	 50.32	0	3152092..3153015	+	307	123443114	-	YE2900	-	hypothetical protein
2712	 43.78	0	3153030..3153278	-	82	123443115	-	YE2901	-	hypothetical protein
2713	 50.17	0	3153347..3155359	-	670	123443116	uvrB	YE2902	-	excinuclease ABC subunit B
2714	 49.15	0	3156324..3157031	+	235	123443117	-	YE2903	-	putative amino acid transporter
2715	 52.93	+1	3157143..3157790	-	215	123443118	bioD	YE2904	-	dithiobiotin synthetase
2716	 51.81	0	3157849..3158595	-	248	123443119	bioC	YE2905	-	biotin synthesis protein BioC
2717	 55.21	+1	3158645..3159796	-	383	123443120	bioF	YE2906	-	8-amino-7-oxononanoate synthase
2718	 50.81	0	3159796..3160848	-	350	123443121	bioB	YE2907	-	biotin synthase
2719	 52.66	+1	3160948..3162225	+	425	123443122	bioA	YE2908	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2720	 49.80	0	3162343..3163344	-	333	123443123	-	YE2909	-	6-phosphogluconolactonase
2721	 49.76	0	3163758..3164579	+	273	123443124	-	YE2910	-	phosphotransferase
2722	 50.80	0	3164739..3165803	-	354	123443125	modC	YE2911	-	molybdate transporter ATP-binding protein
2723	 53.30	+1	3165797..3166492	-	231	123443126	modB	YE2912	-	molybdate ABC transporter permease protein
2724	 45.95	0	3166492..3167268	-	258	123443127	modA	YE2913	-	molybdate transporter periplasmic protein
2725	 43.26	0	3167485..3167625	-	46	123443128	-	YE2913A	-	hypothetical protein
2726	 49.75	0	3167860..3168651	+	263	123443129	modE	YE2914	-	DNA-binding transcriptional regulator ModE
2727	 48.73	0	3168942..3170435	+	497	123443130	modF	YE2915	-	putative molybdenum transport ATP-binding protein ModF
2728	 48.72	0	3170637..3171455	+	272	123443131	-	YE2916	-	hypothetical protein
2729	 49.46	0	3171753..3172769	+	338	123443132	galD	YE2917	-	UDP-galactose-4-epimerase
2730	 51.85	0	3172779..3173885	+	368	123443133	galB	YE2918	-	galactose-1-phosphate uridylyltransferase
2731	 51.04	0	3173885..3175036	+	383	123443134	galA	YE2919	-	galactokinase
2732	 51.74	0	3175030..3176094	+	354	123443135	galM	YE2920	-	aldose 1-epimerase
2733	 47.02	0	3176269..3176604	+	111	123443136	psiF	YE2921	-	putative starvation-inducible protein
2734	 37.92	-2	3176908..3178587	+	559	123443137	-	YE2922	-	putative protease
2735	 46.01	0	3178753..3179604	+	283	123443138	nuc	YE2923	-	DNA/RNA non-specific endonuclease
2736	 47.54	0	3179811..3180563	+	250	123443139	gpm	YE2924	-	phosphoglycerate mutase 1
2737	 49.12	0	3180666..3181748	-	360	123443140	aroG	YE2925	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2738	 49.30	0	3181963..3182895	+	310	123443141	-	YE2926	-	zinc transporter ZitB
2739	 46.50	0	3182971..3183699	-	242	123443142	pnuC	YE2927	-	intergral membrane NMN transport protein PnuC
2740	 51.04	0	3183947..3185008	-	353	123443143	nadA	YE2928	-	quinolinate synthetase
2741	 46.67	0	3186154..3186963	-	269	123443144	-	YE2930	-	hypothetical protein
2742	 46.94	0	3186973..3187479	-	168	123443145	excC	YE2931	-	peptidoglycan-associated outer membrane lipoprotein
2743	 49.81	0	3187528..3188820	-	430	123443146	tolB	YE2932	-	translocation protein TolB
2744	 52.37	0	3188940..3190100	-	386	123443147	tolA	YE2933	-	cell envelope integrity inner membrane protein TolA
2745	 48.95	0	3190197..3190625	-	142	123443148	tolR	YE2934	-	colicin uptake protein TolR
2746	 48.18	0	3190638..3191324	-	228	123443149	tolQ	YE2935	-	colicin uptake protein TolQ
2747	 49.25	0	3191324..3191725	-	133	123443150	-	YE2936	-	acyl-CoA thioester hydrolase YbgC
2748	 48.95	0	3191873..3192205	-	110	123443151	-	YE2937	-	hypothetical protein
2749	 49.91	0	3192297..3193436	-	379	123443152	cydB	YE2938	-	cytochrome D ubiquinol oxidase subunit II
2750	 47.86	0	3193451..3195019	-	522	123443153	cydA	YE2939	-	cytochrome D ubiquinol oxidase subunit I
2751	 47.18	0	3195608..3197506	+	632	123443154	-	YE2940	-	putative 5'-nucleotidase
2752	 48.24	0	3197578..3198456	-	292	123443155	sucD	YE2941	-	succinyl-CoA synthetase subunit alpha
2753	 50.39	0	3198456..3199622	-	388	123443156	sucC	YE2942	-	succinyl-CoA synthetase subunit beta
2754	 50.25	0	3199736..3200959	-	407	123443157	sucB	YE2943	-	dihydrolipoamide acetyltransferase
2755	 51.10	0	3200988..3203795	-	935	123443158	kgd	YE2944	-	alpha-ketoglutarate decarboxylase
2756	 47.00	0	3204090..3204806	-	238	123443159	sdhB	YE2945	-	succinate dehydrogenase iron-sulfur subunit
2757	 51.95	0	3204860..3206626	-	588	123443160	sdhA	YE2946	-	succinate dehydrogenase flavoprotein subunit
2758	 47.13	0	3206627..3206974	-	115	123443161	sdhD	YE2947	-	succinate dehydrogenase cytochrome b556 small membrane subunit
2759	 48.72	0	3206968..3207357	-	129	123443162	sdhC	YE2948	-	succinate dehydrogenase cytochrome b556 large membrane subunit
2760	 49.49	0	3208007..3209287	+	426	123443163	gltA	YE2949	-	type II citrate synthase
2761	 49.38	0	3209353..3210000	-	215	123443164	pcp	YE2950	-	pyrrolidone-carboxylate peptidase
2762	 50.69	0	3210009..3211028	-	339	123443165	-	YE2951	-	hypothetical protein
2763	 49.04	0	3211025..3211756	-	243	123443166	-	YE2952	-	hypothetical protein
2764	 54.88	+1	3211847..3212584	-	245	123443167	-	YE2953	-	hypothetical protein
2765	 54.78	+1	3212581..3213531	-	316	123443168	-	YE2954	-	hypothetical protein
2766	 54.49	+1	3213525..3214181	-	218	123443169	-	YE2955A	-	hypothetical protein
2767	 49.60	0	3214601..3215344	-	247	123443170	-	YE2955	-	putative hydrolase-oxidase
2768	 47.62	0	3215377..3216342	-	321	123443171	-	YE2956	-	putative 3',5'-cyclic-nucleotide phosphodiesterase
2769	 51.31	0	3216448..3217893	-	481	123443172	phr	YE2957	-	deoxyribodipyrimidine photolyase
2770	 44.65	0	3217897..3218382	-	161	123443173	-	YE2958	-	hypothetical protein
2771	 47.83	0	3218478..3218684	-	68	123443174	ybfA	YE2959	-	hypothetical protein
2772	 52.87	+1	3219258..3220946	+	562	123443175	kdpA	YE2960	-	potassium-transporting ATPase subunit A
2773	 54.52	+1	3221042..3223108	+	688	123443176	kdpB	YE2961	-	potassium-transporting ATPase subunit B
2774	 50.75	0	3223244..3223846	+	200	123443177	kdpC	YE2962	-	potassium-transporting ATPase subunit C
2775	 53.44	+1	3223856..3226555	+	899	123443178	kdpD	YE2963	-	sensor protein KdpD
2776	 50.19	0	3226714..3227241	+	175	123443179	kdpE	YE2964	-	two-component regulatory protein response regulator KdpE
2777	 48.48	0	3227334..3227762	+	142	123443180	-	YE2965	-	hypothetical protein
2778	 35.95	-2	3227908..3229359	+	483	123443181	-	YE2966	-	putative hemolysin
2779	 49.91	0	3229442..3231082	-	546	123443182	pgm	YE2967	-	phosphoglucomutase
2780	 48.33	0	3231175..3231714	-	179	123443183	seqA	YE2968	-	replication initiation regulator SeqA
2781	 48.05	0	3231928..3232722	+	264	123443184	-	YE2969	-	hypothetical protein
2782	 47.92	0	3233066..3233353	+	95	123443185	-	YE2970	-	LexA regulated protein
2783	 48.64	0	3233420..3235078	-	552	123443186	-	YE2971	-	putative methyl-accepting chemotaxis protein
2784	 46.21	0	3235301..3235828	+	175	123443187	fldA	YE2972	-	flavodoxin FldA
2785	 43.62	0	3236197..3236643	+	148	123443188	fur	YE2973	-	ferric uptake regulator
2786	 48.21	0	3237040..3239715	-	891	123443189	chb	YE2974	-	chitobiase precursor
2787	 48.01	0	3239808..3240134	-	108	123443190	-	YE2975	-	putative lipoprotein
2788	 48.86	0	3240195..3241598	-	467	123443191	ybfM	YE2976	-	hypothetical protein
2789	 49.10	0	3242234..3243901	-	555	123443192	glnS	YE2977	-	glutaminyl-tRNA synthetase
2790	 49.90	0	3244095..3246128	-	677	123443193	nagE	YE2978	-	pts system, N-acetylglucosamine-specific IIABC component
2791	 46.44	0	3246499..3247299	+	266	123443194	nagB	YE2979	-	glucosamine-6-phosphate deaminase
2792	 47.21	0	3247319..3248464	+	381	123443195	nagA	YE2980	-	N-acetylglucosamine-6-phosphate deacetylase
2793	 48.53	0	3248478..3249701	+	407	123443196	nagC	YE2981	-	putative N-acetylglucosamine regulatory protein
2794	 48.74	0	3249912..3250664	+	250	123443197	nagD	YE2982	-	UMP phosphatase
2795	 48.17	0	3251009..3252673	+	554	123443198	asnB	YE2983	-	asparagine synthetase B
2796	 51.69	0	3253760..3254941	-	393	123443199	ubiF	YE2984	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2797	 48.14	0	3255184..3256608	+	474	123443200	miaB	YE2985	-	putative tRNA-thiotransferase
2798	 50.37	0	3256887..3257978	+	363	123443201	-	YE2986	-	hypothetical protein
2799	 46.20	0	3257975..3258448	+	157	123443202	-	YE2987	-	putative metalloprotease
2800	 47.21	0	3258563..3259441	+	292	123443203	ybeX	YE2988	-	hypothetical protein
2801	 50.76	0	3259449..3261026	+	525	123443204	lnt	YE2989	-	apolipoprotein N-acyltransferase
2802	 47.35	0	3261035..3261619	+	194	123443205	-	YE2990	-	hypothetical protein
2803	 46.99	0	3262206..3263120	+	304	123443206	glnH	YE2991	-	glutamate and aspartate transporter subunit
2804	 47.37	0	3263298..3264038	+	246	123443207	gltJ	YE2992	-	putative glutamate/aspartate transport system permease
2805	 50.37	0	3264038..3264712	+	224	123443208	gltK	YE2993	-	putative glutamate/aspartate transport system permease
2806	 46.50	0	3264709..3265437	+	242	123443209	gltL	YE2994	-	putative glutamate/aspartate transport ATP-binding protein
2807	 45.96	0	3265493..3265975	-	160	123443210	-	YE2995	-	hypothetical protein
2808	 50.75	0	3266354..3268936	+	860	123443211	leuS	YE2996	-	leucyl-tRNA synthetase
2809	 50.64	0	3268951..3269574	+	207	123443212	rlpB	YE2997	-	LPS-assembly lipoprotein RplB
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.