IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2610	 54.67	+1	3037703..3038344	+	213	123443013	hyfA	YE2798	-	hydrogenase-4 component A
2611	 54.24	+1	3038341..3040368	+	675	123443014	hyfB	YE2799	-	hydrogenase 4 subunit B
2612	 55.87	+1	3040380..3041333	+	317	123443015	hyfC	YE2800	-	hydrogenase-4 component C
2613	 52.93	+1	3041352..3042821	+	489	123443016	hyfD	YE2801	-	hydrogenase 4 subunit D
2614	 50.90	0	3042833..3043498	+	221	123443017	hyfE	YE2802	-	hydrogenase 4 membrane subunit
2615	 54.40	+1	3043503..3045140	+	545	123443018	hyfF	YE2803	-	hydrogenase 4 subunit F
2616	 54.10	+1	3045142..3046947	+	601	123443019	hyfG	YE2804	-	hydrogenase-4 component G
2617	 48.30	0	3046959..3047546	+	195	123443020	hyfH	YE2805	-	hydrogenase 4 subunit H
2618	 52.04	0	3047543..3048349	+	268	123443021	hyfI	YE2806	-	hydrogenase-4 component I
2619	 49.50	0	3048342..3048743	+	133	123443022	hyfJ	YE2807	-	hydrogenase-4 component J
2620	 50.63	0	3048740..3049213	+	157	123443023	hycI	YE2808	-	hydrogenase 3 maturation protease
2621	 54.88	+1	3049640..3050182	+	180	123443024	hydN	YE2809	-	4Fe-4S ferrodoxin
2622	 51.26	0	3050211..3052358	+	715	123443025	fdhF	YE2810	-	formate dehydrogenase H
2623	 45.05	0	3052602..3054761	-	719	123443026	hyfR	YE2811	-	putative hydrogenlyase transcriptional activator
2624	 42.57	-1	3055206..3056060	+	284	123443027	focB	YE2812	-	putative formate transporter
2625	 44.71	0	3056171..3057181	-	336	123443028	mglC	YE2813	-	beta-methylgalactoside transporter inner membrane component
2626	 40.83	-1	3057202..3058722	-	506	123443029	mglA	YE2814	-	galactose/methyl galaxtoside transporter ATP-binding protein
2627	 44.61	0	3058918..3059910	-	330	123443030	mglB	YE2815	-	galactose-binding protein
2628	 50.87	0	3060265..3061302	-	345	123443031	galS	YE2816	-	DNA-binding transcriptional regulator GalS
2629	 50.56	0	3061484..3062650	-	388	123443032	yeiB	YE2817	-	hypothetical protein
2630	 46.61	0	3062705..3063367	-	220	123443033	folE	YE2818	-	GTP cyclohydrolase I
2631	 53.37	+1	3063522..3064694	-	390	123443034	-	YE2819	-	hypothetical protein
2632	 53.45	+1	3064831..3065700	+	289	123443035	-	YE2820	-	LysR family transcriptional regulator
2633	 47.35	0	3065971..3067119	+	382	123443036	-	YE2821	-	alcohol dehydrogenase
2634	 51.25	0	3067140..3067982	+	280	123443037	-	YE2822	-	putative esterase
2635	 34.68	-2	3068765..3071137	+	790	123443038	-	YE2823	-	hypothetical protein
2636	 34.20	-2	3071142..3072404	+	420	123443039	-	YE2824	-	hypothetical protein
2637	 35.30	-2	3072406..3073065	+	219	123443040	-	YE2825	-	ABC transporter ATP-binding protein
2638	 37.30	-2	3073083..3074393	+	436	123443041	-	YE2826	-	putative heme-binding protein
2639	 46.48	0	3074501..3075040	-	179	123443042	-	YE2827	-	hypothetical protein
2640	 49.11	0	3075244..3076479	+	411	123443043	bisB	YE2828	-	molybdopterin biosynthesis protein MoeA
2641	 48.22	0	3076519..3077304	+	261	123443044	chlN	YE2829	-	molybdopterin biosynthesis protein MoeB
2642	 46.56	0	3077686..3080112	+	808	123443045	-	YE2830	-	hypothetical protein
2643	 46.43	0	3080223..3081818	-	531	123443046	ybiT	YE2831	-	ABC transporter ATP-binding protein
2644	 42.34	-1	3081998..3083407	-	469	123443047	-	YE2832	-	hypothetical protein
2645	 42.39	-1	3083465..3084403	-	312	123443048	-	YE2833	-	hypothetical protein
2646	 46.90	0	3084900..3085592	+	230	123443049	-	YE2834	-	hypothetical protein
2647	 47.54	0	3085714..3086241	-	175	123443050	ompX	YE2835	-	outer membrane protein X
2648	 29.78	-2	3086365..3086589	-	74	123443051	-	YE2836	-	hypothetical protein
2649	 50.34	0	3086644..3087531	+	295	123443052	-	YE2837	-	threonine and homoserine efflux system
2650	 51.02	0	3087545..3088036	+	163	123443053	-	YE2838	-	hypothetical protein
2651	 45.99	0	3088214..3088774	+	186	123443054	-	YE2839	-	hypothetical protein
2652	 50.45	0	3088834..3089388	+	184	123443055	-	YE2840	-	putative RNA polymerase sigma factor
2653	 52.25	0	3089385..3090050	+	221	123443056	-	YE2841	-	hypothetical protein
2654	 52.25	0	3090075..3090851	+	258	123443057	tam	YE2842	-	trans-aconitate 2-methyltransferase
2655	 43.73	0	3091166..3091675	+	169	123443058	dps	YE2843	-	DNA starvation/stationary phase protection protein Dps
2656	 50.19	0	3091792..3092058	+	88	123443059	-	YE2844	-	hypothetical protein
2657	 46.77	0	3092445..3093188	+	247	123443060	glnH	YE2845	-	glutamine ABC transporter periplasmic protein
2658	 50.38	0	3093255..3093911	+	218	123443061	glnP	YE2846	-	glutamine ABC transporter permease protein
2659	 48.41	0	3093908..3094630	+	240	123443062	glnQ	YE2847	-	glutamine ABC transporter ATP-binding protein
2660	 47.20	0	3094913..3096145	-	410	123443063	-	YE2848	-	putative chemotactic transducer
2661	 47.92	0	3096772..3097779	-	335	123443064	-	YE2849	-	putative SAM-dependent methyltransferase
2662	 49.53	0	3097906..3098547	+	213	123443065	-	YE2850	-	hypothetical protein
2663	 44.83	0	3098674..3098934	+	86	123443066	-	YE2851	-	hypothetical protein
2664	 46.75	0	3099086..3100948	-	620	123443067	-	YE2852	-	putative peptidase
2665	 50.76	0	3101167..3102147	-	326	123443068	ybiB	YE2853	-	hypothetical protein
2666	 52.34	0	3102357..3103061	-	234	123443069	aqpZ	YE2854	-	aquaporin Z
2667	 49.91	0	3103372..3105555	-	727	123443070	dinG	YE2855	-	ATP-dependent DNA helicase DinG
2668	 42.56	-1	3105995..3107110	+	371	123443071	ompC2	YE2856	-	outer membrane protein C2
2669	 46.07	0	3107234..3108544	-	436	123443072	-	YE2857	-	hypothetical protein
2670	 48.82	0	3108825..3109715	+	296	123443073	-	YE2858	-	hypothetical protein
2671	 49.51	0	3109970..3110884	-	304	123443074	-	YE2859	-	LysR family transcriptional regulator
2672	 48.19	0	3110994..3111740	+	248	123443075	-	YE2860	-	putative short chain dehydrogenase
2673	 47.14	0	3111996..3112799	-	267	123443076	-	YE2861	-	hypothetical protein
2674	 48.15	0	3112831..3113559	-	242	123443077	-	YE2862	-	putative ABC transport integral membrane subunit
2675	 46.24	0	3113658..3114602	-	314	123443078	-	YE2863	-	putative ABC transport ATP-binding subunit
2676	 46.58	0	3114599..3115753	-	384	123443079	-	YE2864	-	putative ABC transport integral membrane subunit
2677	 45.87	0	3115862..3116794	-	310	123443080	-	YE2865	-	putative substrate-binding transport protein
2678	 43.53	0	3117162..3118220	-	352	123443081	-	YE2866	-	putative fatty acid desaturase
2679	 46.68	0	3118377..3119507	-	376	123443082	-	YE2867	-	hypothetical protein
2680	 46.08	0	3119899..3120753	+	284	123443083	-	YE2868	-	putative sulfurtransferase
2681	 48.78	0	3120760..3121458	-	232	123443084	-	YE2869	-	putative ABC transport ATP-binding subunit
2682	 46.48	0	3121586..3122422	-	278	123443085	-	YE2870	-	putative ABC transport ATP-binding subunit
2683	 46.33	0	3122419..3123495	-	358	123443086	-	YE2871	-	branched chain amino acid ABC transporter permease
2684	 49.44	0	3123495..3125096	-	533	123443087	-	YE2872	-	branched chain amino acid ABC transporter permease
2685	 46.02	0	3125172..3126440	-	422	123443088	-	YE2873	-	putative substrate-binding periplasmic transport protein
2686	 42.46	-1	3126784..3127254	-	156	123443089	-	YE2874	-	hypothetical protein
2687	 41.83	-1	3127508..3128413	-	301	123443090	-	YE2875	-	putative ABC transport membrane permease
2688	 44.15	0	3128413..3129216	-	267	123443091	-	YE2876	-	putative ABC transport membrane permease
2689	 40.97	-1	3129345..3130274	-	309	123443092	-	YE2877	-	putative substrate-binding periplasmic transport protein
2690	 41.82	-1	3130311..3131147	-	278	123443093	-	YE2878	-	putative ABC transport ATP-binding subunit
2691	 43.48	0	3131344..3131619	-	91	123443094	-	YE2879	-	hypothetical protein
2692	 43.75	0	3131747..3132850	-	367	123443095	-	YE2880	-	hypothetical protein
2693	 42.69	-1	3133227..3133568	+	113	123443096	-	YE2881	-	hypothetical protein
2694	 40.37	-1	3133632..3134171	-	179	123443097	cyaB	YE2882	-	adenylate cyclase 2
2695	 42.56	-1	3134372..3136084	+	570	123443098	dld	YE2883	-	D-lactate dehydrogenase
2696	 44.87	0	3136432..3137367	-	311	123443099	pbpG	YE2884	-	D-alanyl-D-alanine endopeptidase
2697	 36.97	-2	3137850..3138482	+	210	123443100	-	YE2885	-	hypothetical protein
2698	 48.99	0	3138551..3139489	-	312	123443101	-	YE2886	-	tRNA-dihydrouridine synthase C
2699	 56.16	+1	3139640..3140426	-	261	123443102	-	YE2888	-	transposase for insertion sequence element IS1665
2700	 52.73	+1	3140549..3141904	-	451	123443103	rhlE	YE2889	-	ATP-dependent RNA helicase RhlE
2701	 48.59	0	3142308..3143015	+	235	123443104	-	YE2890	-	putative DNA-binding transcriptional regulator
2702	 51.67	0	3143202..3144188	+	328	123443105	-	YE2891	-	hypothetical protein
2703	 50.74	0	3144202..3145953	+	583	123443106	-	YE2892	-	putative ABC transporter ATP-binding protein
2704	 48.36	0	3145950..3147140	+	396	123443107	-	YE2893	-	hypothetical protein
2705	 45.89	0	3147174..3148280	+	368	123443108	-	YE2894	-	hypothetical protein
2706	 44.59	0	3148597..3149307	-	236	123443109	-	YE2895	-	hypothetical protein
2707	 52.41	0	3149451..3149906	-	151	123443110	MoaE	YE2896	-	molybdopterin synthase large subunit
2708	 52.44	0	3149906..3150151	-	81	123443111	moaD	YE2897	-	molybdopterin synthase small subunit
2709	 49.58	0	3150148..3150627	-	159	123443112	moaC	YE2898	-	molybdenum cofactor biosynthesis protein C
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.