IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
198	 51.70	0	243778..244833	+	351	123440601	pldB	YE0207	-	lysophospholipase L2
199	 48.40	0	244845..245654	+	269	123440602	-	YE0208	-	putative sugar phosphatase
200	 46.65	0	245866..246864	-	332	123440603	glpQ	YE0209	-	glycerophosphodiester phosphodiesterase
201	 50.33	0	247088..248452	-	454	123440604	glpT	YE0210	-	sn-glycerol-3-phosphate transporter
202	 54.11	+1	248974..250629	+	551	123440605	glpA	YE0212	-	sn-glycerol-3-phosphate dehydrogenase subunit A
203	 54.04	+1	250619..251893	+	424	123440606	glpB	YE0213	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
204	 48.20	0	251932..253155	+	407	123440607	glpC	YE0214	-	sn-glycerol-3-phosphate dehydrogenase subunit C
205	 45.95	0	253311..253754	-	147	123440608	dcrB	YE0215	-	hypothetical protein
206	 47.43	0	253896..254576	-	226	123440609	yhhQ	YE0216	-	hypothetical protein
207	 51.37	0	254823..255077	+	84	123440610	-	YE0217	-	cell developmental protein SirA
208	 51.87	0	255099..257429	-	776	123440611	zntA	YE0218	-	zinc/cadmium/mercury/lead-transporting ATPase
209	 49.60	0	257713..258339	-	208	123440612	yhhN	YE0219	-	hypothetical protein
210	 43.30	0	258627..258947	+	106	123440613	-	YE0221	-	hypothetical protein
211	 43.75	0	258986..259369	+	127	123440614	-	YE0222	-	hypothetical protein
212	 39.56	-1	259410..259682	-	90	123440615	yhhL	YE0223	-	hypothetical protein
213	 51.35	0	259672..260226	-	184	123440616	-	YE0224	-	16S rRNA m(2)G966-methyltransferase
214	 48.16	0	260574..262097	+	507	123440617	ftsY	YE0225	-	cell division protein
215	 50.52	0	262103..262771	+	222	123440618	ftsE	YE0226	-	cell division protein FtsE
216	 51.45	0	262860..263720	+	286	123440619	ftsX	YE0227	-	cell division protein FtsX
217	 48.37	0	264131..264988	+	285	123440620	fam	YE0228	-	RNA polymerase factor sigma-32
218	 47.33	0	265084..265476	-	130	123440621	yhhK	YE0229	-	putative acetyltransferase
219	 48.21	0	265898..267013	+	371	123440622	livJ	YE0230	-	branched-chain amino acid-binding protein
220	 49.51	0	267172..268098	+	308	123440623	livH	YE0231	-	branched-chain amino acid transporter permease subunit LivH
221	 49.73	0	268095..269381	+	428	123440624	livM	YE0232	-	leucine/isoleucine/valine transporter permease subunit
222	 50.91	0	269378..270145	+	255	123440625	livG	YE0233	-	leucine/isoleucine/valine transporter ATP-binding subunit
223	 49.57	0	270190..270891	+	233	123440626	livF	YE0234	-	leucine/isoleucine/valine transporter ATP-binding subunit
224	 33.99	-2	270952..272022	-	356	123440627	-	YE0235	-	hypothetical protein
225	 46.05	0	272084..272602	-	172	123440628	-	YE0236	-	hypothetical protein
226	 48.25	0	272611..273240	-	209	123440629	-	YE0237	-	hypothetical protein
227	 44.54	0	273233..273919	-	228	123440630	-	YE0238	-	hypothetical protein
228	 46.82	0	273937..276249	-	770	123440631	-	YE0239	-	hypothetical protein
229	 38.57	-1	276430..276906	-	158	123440632	-	YE0240	-	hypothetical protein
230	 47.05	0	277469..278788	+	439	123440633	ugpB	YE0241	-	glycerol-3-phosphate transporter periplasmic binding protein
231	 50.11	0	278898..279785	+	295	123440634	ugpA	YE0242	-	glycerol-3-phosphate transporter permease
232	 49.76	0	279782..280627	+	281	123440635	ugpE	YE0243	-	glycerol-3-phosphate transporter membrane protein
233	 52.07	0	280634..281722	+	362	123440636	ugpC	YE0244	-	glycerol-3-phosphate transporter ATP-binding subunit
234	 52.50	+1	281719..282459	+	246	123440637	ugpQ	YE0245	-	cytoplasmic glycerophosphodiester phosphodiesterase
235	 52.71	+1	282591..283550	+	319	123440638	-	YE0246	-	hypothetical protein
236	 53.33	+1	283705..284604	+	299	123440639	yigM	YE0247	-	hypothetical protein
237	 52.52	+1	284492..285445	-	317	123440640	metR	YE0248	-	LysR family transcriptional regulator
238	 50.64	0	285551..287827	+	758	123440641	metE	YE0249	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
239	 48.80	0	287893..288603	-	236	123440642	-	YE0250	-	putative carboxymethylenebutenolidase
240	 49.48	0	289388..290149	+	253	123440643	udp	YE0251	-	uridine phosphorylase
241	 47.87	0	290482..291279	+	265	123440644	-	YE0252	-	hypothetical protein
242	 47.25	0	291621..293438	+	605	123440645	-	YE0253	-	putative carbon starvation protein
243	 48.78	0	293567..294097	+	176	123440646	-	YE0254	-	hypothetical protein
244	 46.67	0	294370..295824	+	484	123440647	rumC	YE0255	-	putative DNA recombination protein
245	 45.77	0	295958..296713	+	251	123440648	ubiE	YE0256	-	ubiquinone/menaquinone biosynthesis methyltransferase
246	 45.51	0	296757..297380	+	207	123440649	-	YE0257	-	hypothetical protein
247	 44.67	0	297377..299008	+	543	123440650	ubiB	YE0258	-	putative ubiquinone biosynthesis protein UbiB
248	 43.07	0	299209..299475	+	88	123440651	b3836	YE0259	-	Sec-independent protein translocase protein TatA
249	 50.38	0	299479..300135	+	218	123440652	mtta2	YE0260	-	Sec-independent protein translocase protein TatB
250	 42.56	-1	300138..300917	+	259	123440653	mttB	YE0261	-	TatABCE protein translocation system subunit
251	 49.43	0	300973..301755	+	260	123440654	mttC	YE0262	-	DNase TatD
252	 48.09	0	301770..302792	+	340	123440655	hemB	YE0263	-	delta-aminolevulinic acid dehydratase
253	 42.74	-1	302881..303369	-	162	123440656	rfaH	YE0264	-	transcriptional activator RfaH
254	 48.76	0	303638..305134	+	498	123440657	-	YE0265	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
255	 48.43	0	305189..305890	+	233	123440658	fre	YE0266	-	FMN reductase
256	 52.41	0	305990..307153	-	387	123440659	fadA	YE0267	-	3-ketoacyl-CoA thiolase
257	 49.63	0	307165..309354	-	729	123440660	fadB	YE0268	-	multifunctional fatty acid oxidation complex subunit alpha
258	 46.67	0	309626..310975	+	449	123440661	pepQ	YE0269	-	proline dipeptidase
259	 49.24	0	311626..313077	+	483	123440662	trkH	YE0272	-	potassium transporter
260	 46.82	0	313099..313632	+	177	123440663	hemG	YE0273	-	protoporphyrinogen oxidase
261	 46.34	0	319709..320746	+	345	123440664	murB	YE0274	-	UDP-N-acetylenolpyruvoylglucosamine reductase
262	 43.23	0	320743..321702	+	319	123440665	bioR	YE0275	-	biotin--protein ligase
263	 41.96	-1	321742..322692	-	316	123440666	coaA	YE0276	-	pantothenate kinase
264	 44.93	0	322902..323453	-	183	123440667	-	YE0277	-	putative acetyltransferase
265	 48.02	0	324617..325801	+	394	123440668	tufA	YE0278	-	elongation factor Tu
266	 50.26	0	326041..326424	+	127	123440669	secE	YE0279	-	preprotein translocase subunit SecE
267	 48.35	0	326426..326971	+	181	123440670	nusG	YE0280	-	transcription antitermination protein NusG
268	 47.79	0	327165..327593	+	142	123440671	rplK	YE0281	-	50S ribosomal protein L11
269	 48.23	0	327597..328301	+	234	123440672	rplA	YE0282	-	50S ribosomal protein L1
270	 50.00	0	328676..329179	+	167	123440673	rplJ	YE0283	-	50S ribosomal protein L10
271	 46.61	0	329248..329616	+	122	123440674	rplL	YE0284	-	50S ribosomal protein L7/L12
272	 49.76	0	329960..333988	+	1342	123440675	rpoB	YE0286	-	DNA-directed RNA polymerase subunit beta
273	 51.41	0	334125..338345	+	1406	123440676	rpoC	YE0287	-	DNA-directed RNA polymerase subunit beta'
274	 55.88	+1	338397..339731	-	444	123440677	-	YE0288	-	transposase for insertion sequence element IS1660
275	 50.84	0	339869..340999	-	376	123440678	thiH	YE0289	-	thiamine biosynthesis protein ThiH
276	 52.85	+1	340992..341780	-	262	123440679	thiG	YE0290	-	thiazole synthase
277	 49.54	0	341782..341997	-	71	123440680	thiS	YE0290A	-	sulfur carrier protein ThiS
278	 52.62	+1	341994..342776	-	260	123440681	thiF	YE0291	-	thiamine biosynthesis protein
279	 52.61	+1	342760..343371	-	203	123440682	thiE	YE0292	-	thiamine-phosphate pyrophosphorylase
280	 50.34	0	343427..345313	-	628	123440683	thiC	YE0293	-	thiamine biosynthesis protein ThiC
281	 44.05	0	345825..346328	-	167	123440684	rsd	YE0295	-	anti-RNA polymerase sigma 70 factor
282	 51.53	0	346420..347205	+	261	123440685	nudC	YE0296	-	NADH pyrophosphatase
283	 50.47	0	347286..348353	+	355	123440686	hemE	YE0297	-	uroporphyrinogen decarboxylase
284	 51.63	0	348377..349081	+	234	123440687	nfi	YE0298	-	endonuclease V
285	 44.84	0	349127..349717	+	196	123440688	-	YE0299	-	hypothetical protein
286	 43.84	0	349906..350181	+	91	123440689	hupA	YE0300	-	transcriptional regulator HU subunit alpha
287	 52.42	0	350186..350887	+	233	123440690	yjaH	YE0301	-	hypothetical protein
288	 52.55	+1	350982..352277	-	431	123440691	purD	YE0302	-	phosphoribosylamine--glycine ligase
289	 51.07	0	352303..353892	-	529	123440692	purH	YE0303	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
290	 50.79	0	360392..360706	+	104	123440693	-	YE0304	-	IS1669 hypothetical protein
291	 51.25	0	360724..361521	+	265	123440694	-	YE0305	-	putative transposase for insertion element IS1669
292	 44.79	0	361779..362948	+	389	123440695	-	YE0306	-	putative hydrolase
293	 47.16	0	362987..364642	-	551	123440696	actP	YE0307	-	acetate permease
294	 45.83	0	364639..364950	-	103	123440697	-	YE0308	-	hypothetical protein
295	 48.55	0	365004..366962	-	652	123440698	acs	YE0309	-	acetyl-CoA synthetase
296	 42.92	-1	367882..369195	+	437	123440699	gltP	YE0310	-	glutamate/aspartate:proton symporter
297	 43.13	0	369338..369970	-	210	123440700	-	YE0311	-	putative two-component response regulator
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.