IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2002	 43.29	0	2344589..2345020	-	143	123442405	horYe	YE2144	-	transcriptional regulator SlyA
2003	 41.35	-1	2345201..2345437	+	78	123442406	-	YE2145	-	putative inner membrane protein
2004	 47.09	0	2345444..2346301	+	285	123442407	-	YE2146	-	putative hlyD-family protein
2005	 48.69	0	2346304..2348328	+	674	123442408	-	YE2147	-	hypothetical protein
2006	 48.16	0	2348353..2349249	-	298	123442409	-	YE2148	-	putative aldo/keto reductase
2007	 51.25	0	2349386..2349625	-	79	123442410	-	YE2149	-	hypothetical protein
2008	 43.14	0	2349917..2351548	+	543	123442411	-	YE2150	-	putative cell division protein
2009	 49.59	0	2351671..2352273	+	200	123442412	-	YE2151	-	TetR family transcriptional regulator
2010	 50.27	0	2352350..2353447	+	365	123442413	-	YE2152	-	N-ethylmaleimide reductase
2011	 51.23	0	2353629..2354036	+	135	123442414	gloA	YE2153	-	lactoylglutathione lyase
2012	 49.23	0	2354147..2354794	+	215	123442415	rnt	YE2154	-	ribonuclease T
2013	 48.41	0	2355069..2355413	-	114	123442416	-	YE2155	-	hypothetical protein
2014	 42.87	-1	2355847..2356737	+	296	123442417	-	YE2156	-	hypothetical protein
2015	 45.25	0	2356988..2357566	+	192	123442418	sodB	YE2157	-	superoxide dismutase
2016	 47.86	0	2358092..2359117	+	341	123442419	purR	YE2158	-	DNA-binding transcriptional repressor PurR
2017	 51.44	0	2359173..2360111	-	312	123442420	-	YE2159	-	putative DNA-binding transcriptional regulator
2018	 48.93	0	2360403..2361620	+	405	123442421	-	YE2160	-	inner membrane transport protein YdhC
2019	 45.57	0	2361928..2363079	+	383	123442422	cdfA	YE2161	-	cyclopropane fatty acyl phospholipid synthase
2020	 45.62	0	2363153..2363803	-	216	123442423	ribC	YE2162	-	riboflavin synthase subunit alpha
2021	 49.49	0	2364118..2365491	+	457	123442424	-	YE2163	-	multidrug efflux protein
2022	 47.91	0	2366685..2368097	+	470	123442425	pykF	YE2164	-	pyruvate kinase
2023	 45.99	0	2368417..2368653	+	78	123442426	lpp	YE2165	-	major outer membrane lipoprotein
2024	 50.28	0	2368885..2369952	-	355	123442427	-	YE2166	-	hypothetical protein
2025	 50.12	0	2370219..2370641	-	140	123442428	-	YE2167	-	cysteine desufuration protein SufE
2026	 52.34	0	2370803..2371954	-	383	123442429	-	YE2168	-	selenocysteine lyase
2027	 50.99	0	2372050..2373216	-	388	123442430	-	YE2169	-	cysteine desulfurase activator complex subunit SufD
2028	 47.12	0	2373356..2374102	-	248	123442431	sufC	YE2170	-	cysteine desulfurase ATPase component
2029	 49.74	0	2374159..2375670	-	503	123442432	-	YE2171	-	cysteine desulfurase activator complex subunit SufB
2030	 49.19	0	2375685..2376056	-	123	123442433	sufA	YE2172	-	iron-sulfur cluster assembly scaffold protein
2031	 50.35	0	2376748..2377170	-	140	123442434	-	YE2173	-	hypothetical protein
2032	 50.21	0	2377345..2380401	-	1018	123442435	-	YE2174	-	hypothetical protein
2033	 49.28	0	2380848..2381951	+	367	123442436	-	YE2175	-	putative inner membrane protein
2034	 49.12	0	2382512..2384893	-	793	123442437	pps	YE2176	-	phosphoenolpyruvate synthase
2035	 49.15	0	2385180..2386001	+	273	123442438	-	YE2177	-	hypothetical protein
2036	 50.57	0	2386228..2387277	+	349	123442439	aroH	YE2178	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2037	 38.78	-1	2387460..2387606	+	48	123442440	-	YE2179	-	hypothetical protein
2038	 47.91	0	2387828..2389858	+	676	123442441	hemR2	YE2180	-	hemin storage receptor protein
2039	 46.33	0	2389973..2391034	+	353	123442442	hemS2	YE2181	-	hemin transport protein
2040	 49.64	0	2391027..2391860	+	277	123442443	hmuT2	YE2182	-	hemin-binding periplasmic protein
2041	 49.67	0	2391920..2393419	-	499	123442444	-	YE2183	-	hypothetical protein
2042	 48.08	0	2393419..2394435	-	338	123442445	lplA	YE2184	-	lipoate-protein ligase A
2043	 48.17	0	2395004..2395468	-	154	123442446	nlpC	YE2185	-	putative lipoprotein
2044	 40.57	-1	2395730..2396116	-	128	123442447	-	YE2186	-	hypothetical protein
2045	 44.35	0	2396113..2396457	-	114	123442448	-	YE2187	-	hypothetical protein
2046	 44.38	0	2396454..2398118	-	554	123442449	arnT	YE2188	-	4-amino-4-deoxy-L-arabinose transferase
2047	 48.28	0	2398118..2399020	-	300	123442450	-	YE2189	-	hypothetical protein
2048	 43.65	0	2399017..2401080	-	687	123442451	-	YE2190	-	bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
2049	 44.82	0	2401077..2402060	-	327	123442452	pmrF	YE2191	-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
2050	 47.87	0	2402053..2403201	-	382	123442453	-	YE2192	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
2051	 46.85	0	2403548..2404309	-	253	123442454	btuD	YE2193	-	vitamin B12-transporter ATPase
2052	 44.86	0	2404331..2404885	-	184	123442455	btuE	YE2194	-	putative glutathione peroxidase
2053	 49.50	0	2404955..2405962	-	335	123442456	btuC	YE2195	-	vtamin B12-transporter permease
2054	 49.09	0	2406135..2406629	-	164	123442457	-	YE2196	-	hypothetical protein
2055	 47.90	0	2407702..2408676	-	324	123442458	cysB	YE2198	-	transcriptional regulator CysB
2056	 48.59	0	2409236..2411851	-	871	123442459	supX	YE2199	-	DNA topoisomerase I
2057	 38.10	-2	2412292..2412543	+	83	123442460	-	YE2201	-	hypothetical protein
2058	 44.30	0	2412636..2413829	-	397	123442461	tpn1330	YE2202	-	transposase for IS1330
2059	 47.56	0	2413957..2415003	-	348	123442462	sohB	YE2203	-	putative periplasmic protease
2060	 50.52	0	2415176..2415937	+	253	123442463	-	YE2204	-	short chain dehydrogenase
2061	 46.70	0	2415949..2416539	+	196	123442464	btuR	YE2205	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
2062	 52.37	0	2416616..2417545	-	309	123442465	-	YE2206	-	23S rRNA pseudouridylate synthase B
2063	 46.70	0	2417906..2418526	-	206	123442466	-	YE2207	-	hypothetical protein
2064	 53.11	+1	2418555..2419343	-	262	123442467	trpH	YE2208	-	hypothetical protein
2065	 53.17	+1	2420029..2421591	+	520	123442468	trpE	YE2209	-	anthranilate synthase component I
2066	 52.79	+1	2421606..2422196	+	196	123442469	trpG	YE2210	-	anthranilate synthase component II
2067	 54.17	+1	2422314..2423273	+	319	123442470	trpD	YE2211	-	anthranilate phosphoribosyltransferase
2068	 51.16	0	2423319..2424653	+	444	123442471	trpC	YE2212	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
2069	 48.87	0	2424837..2426027	+	396	123442472	trpB	YE2213	-	tryptophan synthase subunit beta
2070	 50.56	0	2426027..2426833	+	268	123442473	trpA	YE2214	-	tryptophan synthase subunit alpha
2071	 45.71	0	2427095..2427409	+	104	123442474	-	YE2215	-	putative lipoprotein
2072	 46.38	0	2427708..2428343	-	211	123442475	ompW	YE2216	-	outer membrane protein W
2073	 51.80	0	2428604..2429047	+	147	123442476	-	YE2216A	-	hypothetical protein
2074	 44.27	0	2429099..2429866	+	255	123442477	-	YE2218	-	hypothetical protein
2075	 50.31	0	2429913..2431667	-	584	123442478	-	YE2219	-	putative sulfate permease
2076	 44.57	0	2431898..2432440	+	180	123442479	ispA	YE2220	-	intracellular septation protein A
2077	 50.13	0	2432556..2432930	+	124	123442480	-	YE2221	-	putative acyl-CoA thioester hydrolase
2078	 49.61	0	2433026..2433787	-	253	123442481	tonB	YE2222	-	transport protein TonB
2079	 53.87	+1	2434095..2434391	+	98	123442482	-	YE2223	-	YciI-like protein
2080	 40.15	-1	2434593..2434856	-	87	123442483	-	YE2224	-	hypothetical protein
2081	 41.22	-1	2435008..2435730	-	240	123442484	-	YE2225	-	hypothetical protein
2082	 49.90	0	2436800..2438260	+	486	123442485	cls	YE2227	-	cardiolipin synthetase
2083	 42.90	-1	2438395..2438718	+	107	123442486	-	YE2228	-	dsDNA-mimic protein
2084	 47.70	0	2438864..2439865	-	333	123442487	oppF	YE2229	-	oligopeptide transport ATP-binding protein
2085	 48.40	0	2439862..2440863	-	333	123442488	oppD	YE2230	-	oligopeptide transporter ATP-binding component
2086	 48.45	0	2440875..2441780	-	301	123442489	oppC	YE2231	-	oligopeptide transport system permease protein
2087	 46.36	0	2441799..2442719	-	306	123442490	oppB	YE2232	-	oligopeptide transporter permease
2088	 44.08	0	2442804..2444441	-	545	123442491	oppA	YE2233	-	periplasmic oligopeptide-binding protein precursor
2089	 43.24	0	2444670..2446385	-	571	123442492	oppA2	YE2234	-	periplasmic oligopeptide-binding protein precursor
2090	 43.72	0	2447238..2447882	-	214	123442493	-	YE2237	-	hypothetical protein
2091	 48.36	0	2448583..2451258	+	891	123442494	adhE	YE2238	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2092	 44.33	0	2451758..2452357	-	199	123442495	tdk	YE2239	-	thymidine kinase
2093	 34.43	-2	2452327..2452599	+	90	123442496	-	YE2240	-	hypothetical protein
2094	 43.07	0	2453110..2453520	+	136	123442497	bglY	YE2241	-	global DNA-binding transcriptional dual regulator H-NS
2095	 43.19	0	2453903..2455252	-	449	123442498	-	YE2242	-	putative nucleotide sugar dehydrogenase
2096	 43.85	0	2455574..2456590	-	338	123442499	-	YE2243	-	response regulator of RpoS
2097	 48.28	0	2456692..2457594	-	300	123442500	-	YE2244	-	hypothetical protein
2098	 40.15	-1	2457914..2458324	+	136	123442501	-	YE2245	-	hypothetical protein
2099	 44.09	0	2458963..2459427	+	154	123442502	-	YE2246	-	hypothetical protein
2100	 44.88	0	2459509..2460357	+	282	123442503	purU	YE2247	-	formyltetrahydrofolate deformylase
2101	 33.22	-2	2461446..2462306	-	286	123442504	-	YE2253	-	LysR family transcriptional regulator
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.