IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1952	 49.65	0	2286528..2290370	-	1280	123442355	hrpA	YE2090	-	ATP-dependent RNA helicase HrpA
1953	 40.74	-1	2290584..2291825	-	413	123442356	-	YE2091	-	hypothetical protein
1954	 48.51	0	2292282..2292887	+	201	123442357	acpD	YE2092	-	azoreductase
1955	 51.34	0	2293453..2293824	-	123	123442358	-	YE2095	-	hypothetical protein
1956	 39.78	-1	2293834..2294019	-	61	123442359	-	YE2096	-	putative lipoprotein
1957	 49.85	0	2294025..2296658	-	877	123442360	-	YE2097	-	hypothetical protein
1958	 47.23	0	2296932..2297924	+	330	123442361	hslI	YE2098	-	D-lactate dehydrogenase
1959	 49.69	0	2298056..2298373	-	105	123442362	-	YE2099	-	putative lipoprotein
1960	 45.30	0	2298612..2299271	+	219	123442363	-	YE2100	-	putative Mg(2+) transport ATPase
1961	 46.55	0	2299380..2299712	-	110	123442364	qacE	YE2101	-	quaternary ammonium compound-resistance protein
1962	 51.84	0	2300090..2303623	+	1177	123442365	nifJ	YE2102	-	putative pyruvate-flavodoxin oxidoreductase
1963	 40.49	-1	2303703..2305058	-	451	123442366	arbB	YE2103	-	beta-glucosidase
1964	 40.54	-1	2305196..2307097	-	633	123442367	arbF	YE2104	-	PTS system beta-glucoside-specific IIABC component
1965	 34.77	-2	2307182..2308015	-	277	123442368	arbG	YE2105	-	beta-glucoside operon antiterminator
1966	 46.28	0	2308324..2309265	+	313	123442369	-	YE2106	-	C32 tRNA thiolase
1967	 48.98	0	2309579..2310562	-	327	123442370	zntB	YE2107	-	zinc transporter
1968	 43.60	0	2311500..2313116	-	538	123442371	mppA	YE2110	-	putative periplasmic murein peptide-binding protein
1969	 52.97	+1	2313263..2313970	+	235	123442372	-	YE2111	-	murein peptide amidase A
1970	 50.51	0	2313967..2314938	-	323	123442373	-	YE2112	-	putative mandelate racemase / muconate lactonizing protein
1971	 47.42	0	2315091..2315594	+	167	123442374	tpx	YE2113	-	thiol peroxidase
1972	 48.54	0	2315717..2317294	-	525	123442375	tyrR	YE2114	-	DNA-binding transcriptional regulator TyrR
1973	 52.80	+1	2317614..2318060	+	148	123442376	-	YE2115	-	hypothetical protein
1974	 50.98	0	2318124..2318582	+	152	123442377	-	YE2116	-	hypothetical protein
1975	 53.33	+1	2318585..2319649	-	354	123442378	-	YE2117	-	hypothetical protein
1976	 51.22	0	2319646..2321043	-	465	123442379	-	YE2118	-	hypothetical protein
1977	 50.43	0	2321309..2321659	-	116	123442380	pspC	YE2119	-	DNA-binding transcriptional activator PspC
1978	 45.61	0	2321728..2321955	-	75	123442381	pspB	YE2120	-	phage shock protein B
1979	 47.60	0	2322117..2322782	-	221	123442382	pspA	YE2121	-	phage shock protein PspA
1980	 50.98	0	2322972..2323991	+	339	123442383	pspF	YE2122	-	phage shock protein operon transcriptional activator
1981	 37.25	-2	2324044..2324400	-	118	123442384	ytxB	YE2123	-	putative lipoprotein
1982	 39.61	-1	2324449..2325276	-	275	123442385	ytxA	YE2124	-	putative enterotoxin subunit
1983	 50.72	0	2326034..2327707	+	557	123442386	sapA	YE2125	-	peptide transport periplasmic protein precursor
1984	 49.69	0	2327704..2328669	+	321	123442387	sapB	YE2126	-	peptide transport system permease protein
1985	 51.85	0	2328656..2329546	+	296	123442388	sapC	YE2127	-	peptide transport system permease protein
1986	 51.36	0	2329546..2330538	+	330	123442389	sapD	YE2128	-	peptide transport system ATP-binding protein
1987	 50.37	0	2330538..2331353	+	271	123442390	sapF	YE2129	-	peptide transport system ATP-binding protein
1988	 41.56	-1	2331499..2331741	+	80	123442391	-	YE2130	-	hypothetical protein
1989	 51.32	0	2331753..2332964	+	403	123442392	-	YE2131	-	hypothetical protein
1990	 50.28	0	2333007..2333891	-	294	123442393	-	YE2132	-	LysR family transcriptional regulator
1991	 49.08	0	2334496..2335962	+	488	123442394	tppB	YE2133	-	putative tripeptide transporter permease
1992	 44.63	0	2336211..2336564	-	117	123442395	-	YE2134	-	hypothetical protein
1993	 50.76	0	2336785..2337375	+	196	123442396	-	YE2135	-	hypothetical protein
1994	 41.29	-1	2337561..2337824	+	87	123442397	-	YE2136	-	hypothetical protein
1995	 46.96	0	2338006..2338614	+	202	123442398	gst	YE2137	-	glutathionine S-transferase
1996	 47.85	0	2338666..2339526	-	286	123442399	pdxY	YE2138	-	pyridoxamine kinase
1997	 48.86	0	2339601..2340875	-	424	123442400	tyrS	YE2139	-	tyrosyl-tRNA synthetase
1998	 49.24	0	2341125..2341778	-	217	123442401	pdxH	YE2140	-	pyridoxamine 5'-phosphate oxidase
1999	 47.18	0	2342034..2342387	-	117	123442402	-	YE2141	-	putative lipoprotein
2000	 52.02	0	2342443..2343555	-	370	123442403	anmK	YE2142	-	anhydro-N-acetylmuramic acid kinase
2001	 54.27	+1	2344000..2344467	+	155	123442404	pcpY	YE2143	-	outer membrane lipoprotein
2002	 43.29	0	2344589..2345020	-	143	123442405	horYe	YE2144	-	transcriptional regulator SlyA
2003	 41.35	-1	2345201..2345437	+	78	123442406	-	YE2145	-	putative inner membrane protein
2004	 47.09	0	2345444..2346301	+	285	123442407	-	YE2146	-	putative hlyD-family protein
2005	 48.69	0	2346304..2348328	+	674	123442408	-	YE2147	-	hypothetical protein
2006	 48.16	0	2348353..2349249	-	298	123442409	-	YE2148	-	putative aldo/keto reductase
2007	 51.25	0	2349386..2349625	-	79	123442410	-	YE2149	-	hypothetical protein
2008	 43.14	0	2349917..2351548	+	543	123442411	-	YE2150	-	putative cell division protein
2009	 49.59	0	2351671..2352273	+	200	123442412	-	YE2151	-	TetR family transcriptional regulator
2010	 50.27	0	2352350..2353447	+	365	123442413	-	YE2152	-	N-ethylmaleimide reductase
2011	 51.23	0	2353629..2354036	+	135	123442414	gloA	YE2153	-	lactoylglutathione lyase
2012	 49.23	0	2354147..2354794	+	215	123442415	rnt	YE2154	-	ribonuclease T
2013	 48.41	0	2355069..2355413	-	114	123442416	-	YE2155	-	hypothetical protein
2014	 42.87	-1	2355847..2356737	+	296	123442417	-	YE2156	-	hypothetical protein
2015	 45.25	0	2356988..2357566	+	192	123442418	sodB	YE2157	-	superoxide dismutase
2016	 47.86	0	2358092..2359117	+	341	123442419	purR	YE2158	-	DNA-binding transcriptional repressor PurR
2017	 51.44	0	2359173..2360111	-	312	123442420	-	YE2159	-	putative DNA-binding transcriptional regulator
2018	 48.93	0	2360403..2361620	+	405	123442421	-	YE2160	-	inner membrane transport protein YdhC
2019	 45.57	0	2361928..2363079	+	383	123442422	cdfA	YE2161	-	cyclopropane fatty acyl phospholipid synthase
2020	 45.62	0	2363153..2363803	-	216	123442423	ribC	YE2162	-	riboflavin synthase subunit alpha
2021	 49.49	0	2364118..2365491	+	457	123442424	-	YE2163	-	multidrug efflux protein
2022	 47.91	0	2366685..2368097	+	470	123442425	pykF	YE2164	-	pyruvate kinase
2023	 45.99	0	2368417..2368653	+	78	123442426	lpp	YE2165	-	major outer membrane lipoprotein
2024	 50.28	0	2368885..2369952	-	355	123442427	-	YE2166	-	hypothetical protein
2025	 50.12	0	2370219..2370641	-	140	123442428	-	YE2167	-	cysteine desufuration protein SufE
2026	 52.34	0	2370803..2371954	-	383	123442429	-	YE2168	-	selenocysteine lyase
2027	 50.99	0	2372050..2373216	-	388	123442430	-	YE2169	-	cysteine desulfurase activator complex subunit SufD
2028	 47.12	0	2373356..2374102	-	248	123442431	sufC	YE2170	-	cysteine desulfurase ATPase component
2029	 49.74	0	2374159..2375670	-	503	123442432	-	YE2171	-	cysteine desulfurase activator complex subunit SufB
2030	 49.19	0	2375685..2376056	-	123	123442433	sufA	YE2172	-	iron-sulfur cluster assembly scaffold protein
2031	 50.35	0	2376748..2377170	-	140	123442434	-	YE2173	-	hypothetical protein
2032	 50.21	0	2377345..2380401	-	1018	123442435	-	YE2174	-	hypothetical protein
2033	 49.28	0	2380848..2381951	+	367	123442436	-	YE2175	-	putative inner membrane protein
2034	 49.12	0	2382512..2384893	-	793	123442437	pps	YE2176	-	phosphoenolpyruvate synthase
2035	 49.15	0	2385180..2386001	+	273	123442438	-	YE2177	-	hypothetical protein
2036	 50.57	0	2386228..2387277	+	349	123442439	aroH	YE2178	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2037	 38.78	-1	2387460..2387606	+	48	123442440	-	YE2179	-	hypothetical protein
2038	 47.91	0	2387828..2389858	+	676	123442441	hemR2	YE2180	-	hemin storage receptor protein
2039	 46.33	0	2389973..2391034	+	353	123442442	hemS2	YE2181	-	hemin transport protein
2040	 49.64	0	2391027..2391860	+	277	123442443	hmuT2	YE2182	-	hemin-binding periplasmic protein
2041	 49.67	0	2391920..2393419	-	499	123442444	-	YE2183	-	hypothetical protein
2042	 48.08	0	2393419..2394435	-	338	123442445	lplA	YE2184	-	lipoate-protein ligase A
2043	 48.17	0	2395004..2395468	-	154	123442446	nlpC	YE2185	-	putative lipoprotein
2044	 40.57	-1	2395730..2396116	-	128	123442447	-	YE2186	-	hypothetical protein
2045	 44.35	0	2396113..2396457	-	114	123442448	-	YE2187	-	hypothetical protein
2046	 44.38	0	2396454..2398118	-	554	123442449	arnT	YE2188	-	4-amino-4-deoxy-L-arabinose transferase
2047	 48.28	0	2398118..2399020	-	300	123442450	-	YE2189	-	hypothetical protein
2048	 43.65	0	2399017..2401080	-	687	123442451	-	YE2190	-	bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
2049	 44.82	0	2401077..2402060	-	327	123442452	pmrF	YE2191	-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
2050	 47.87	0	2402053..2403201	-	382	123442453	-	YE2192	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
2051	 46.85	0	2403548..2404309	-	253	123442454	btuD	YE2193	-	vitamin B12-transporter ATPase
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.