IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1226	 47.75	0	1437668..1438999	-	443	123441629	-	YE1293	-	putative PTS system protein
1227	 47.94	0	1439012..1439326	-	104	123441630	-	YE1294	-	putative exported PTS system protein
1228	 44.62	0	1439678..1440634	+	318	123441631	-	YE1295	-	LacI family transcriptional regulatory protein
1229	 43.63	0	1440917..1442218	+	433	123441632	-	YE1296	-	glucose-1-phosphatase/inositol phosphatase
1230	 44.36	0	1442334..1443467	+	377	123441633	-	YE1297	-	putative inner membrane protein
1231	 51.35	0	1443557..1444594	-	345	123441634	flk	YE1298	-	flagella biosynthesis regulator
1232	 49.86	0	1444897..1445253	+	118	123441635	scsA	YE1299	-	putative metal resistance protein
1233	 53.61	+1	1445304..1447364	+	686	123441636	scsB	YE1300	-	putative metal resistance protein
1234	 50.41	0	1447361..1448086	+	241	123441637	-	YE1301	-	putative metal resistance protein
1235	 50.50	0	1448083..1448583	+	166	123441638	-	YE1302	-	putative metal resistance protein
1236	 51.21	0	1448640..1450121	-	493	123441639	-	YE1303	-	hypothetical protein
1237	 45.88	0	1450279..1451322	+	347	123441640	-	YE1304	-	putative inner membrane protein
1238	 49.72	0	1451329..1452213	-	294	123441641	-	YE1305	-	hypothetical protein
1239	 49.11	0	1452386..1453171	+	261	123441642	-	YE1306	-	AraC family transcriptional regulator
1240	 53.81	+1	1453333..1454460	+	375	123441643	pdxB	YE1307	-	putative D-isomer specific 2-hydroxyacid dehydrogenase
1241	 51.73	0	1454845..1455855	+	336	123441644	asd	YE1308	-	putative semialdehyde dehydrogenase
1242	 51.96	0	1455855..1456697	+	280	123441645	truA	YE1309	-	tRNA pseudouridine synthase A
1243	 43.44	0	1456829..1457491	+	220	123441646	dedA	YE1310	-	hypothetical protein
1244	 50.33	0	1457722..1458633	+	303	123441647	accD	YE1311	-	acetyl-CoA carboxylase subunit beta
1245	 51.46	0	1459015..1460283	+	422	123441648	dedC	YE1312	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
1246	 54.03	+1	1460323..1461042	+	239	123441649	dedD	YE1313	-	hypothetical protein
1247	 46.27	0	1461233..1461742	+	169	123441650	cvpA	YE1314	-	colicin V production protein
1248	 48.48	0	1461755..1463272	+	505	123441651	purF	YE1315	-	amidophosphoribosyltransferase
1249	 48.87	0	1463680..1464252	+	190	123441652	ubiX	YE1317	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1250	 42.53	-1	1464561..1465343	+	260	123441653	hisJ	YE1318	-	histidine-binding periplasmic protein
1251	 44.40	0	1465448..1466134	+	228	123441654	hisQ	YE1319	-	histidine transport system permease protein HisQ
1252	 45.05	0	1466131..1466847	+	238	123441655	hisM	YE1320	-	histidine transport system permease protein HisM
1253	 45.49	0	1466883..1467680	+	265	123441656	hisP	YE1321	-	histidine/lysine/arginine/ornithine transporter subunit
1254	 33.49	-2	1467937..1474269	+	2110	123441657	-	YE1322	-	putative RTX-family protein
1255	 49.28	0	1474340..1475248	-	302	123441658	-	YE1323	-	hypothetical protein
1256	 38.20	-2	1475876..1476574	+	232	123441659	-	YE1324	-	hypothetical protein
1257	 47.62	0	1476888..1477349	+	153	123441660	-	YE1325	-	hypothetical protein
1258	 49.91	0	1477421..1477969	+	182	123441661	-	YE1326	-	hypothetical protein
1259	 47.10	0	1478953..1480209	-	418	123441662	ulaA	YE1328	-	ascorbate-specific PTS system enzyme IIC
1260	 44.44	0	1480222..1480509	-	95	123441663	-	YE1329	-	phosphotransferase enzyme II, B component
1261	 48.87	0	1480552..1480995	-	147	123441664	-	YE1330	-	phosphotransferase enzyme II, A component
1262	 46.39	0	1481241..1482266	+	341	123441665	-	YE1331	-	LacI family transcriptional regulator
1263	 51.16	0	1482848..1485001	-	717	123441666	pta	YE1333	-	phosphate acetyltransferase
1264	 50.29	0	1485159..1486361	-	400	123441667	ack	YE1334	-	acetate kinase
1265	 51.32	0	1486794..1487249	+	151	123441668	-	YE1335	-	hypothetical protein
1266	 46.46	0	1487418..1487912	+	164	123441669	-	YE1336	-	hypothetical protein
1267	 50.53	0	1487953..1488615	+	220	123441670	-	YE1337	-	putative phosphatase
1268	 44.99	0	1488851..1489648	-	265	123441671	-	YE1338	-	hypothetical protein
1269	 50.16	0	1489966..1491849	+	627	123441672	-	YE1339	-	putative ion transport protein
1270	 45.79	0	1492019..1492612	-	197	123441673	-	YE1340	-	hypothetical protein
1271	 50.12	0	1493279..1494493	-	404	123441674	aat	YE1341	-	aminotransferase AlaT
1272	 47.37	0	1495357..1496289	+	310	123441675	hexA	YE1343	-	LysR family transcriptional regulator
1273	 51.66	0	1497136..1497588	+	150	123441676	nuoA	YE1344	-	NADH dehydrogenase subunit A
1274	 51.47	0	1497746..1498423	+	225	123441677	nuoB	YE1345	-	NADH dehydrogenase subunit B
1275	 51.53	0	1498563..1500359	+	598	123441678	nuoD	YE1346	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1276	 52.41	0	1500407..1500925	+	172	123441679	nuoE	YE1347	-	NADH dehydrogenase subunit E
1277	 53.61	+1	1500922..1502292	+	456	123441680	nuoF	YE1348	-	NADH dehydrogenase I subunit F
1278	 53.52	+1	1502398..1505142	+	914	123441681	nuoG	YE1349	-	NADH dehydrogenase subunit G
1279	 51.84	0	1505139..1506116	+	325	123441682	nuoH	YE1350	-	NADH dehydrogenase subunit H
1280	 53.96	+1	1506131..1506673	+	180	123441683	nuoI	YE1351	-	NADH dehydrogenase subunit I
1281	 51.83	0	1506686..1507231	+	181	123441684	nuoJ	YE1352	-	NADH dehydrogenase subunit J
1282	 54.46	+1	1507228..1507530	+	100	123441685	nuoK	YE1353	-	NADH dehydrogenase subunit K
1283	 54.53	+1	1507527..1509371	+	614	123441686	nuoL	YE1354	-	NADH dehydrogenase subunit L
1284	 52.82	+1	1509390..1510913	+	507	123441687	nuoM	YE1355	-	NADH dehydrogenase subunit M
1285	 54.39	+1	1510920..1512377	+	485	123441688	nuoN	YE1356	-	NADH dehydrogenase subunit N
1286	 34.60	-2	1512494..1513834	+	446	123441689	-	YE1357	-	hypothetical protein
1287	 51.22	0	1513997..1514488	+	163	123441690	-	YE1358	-	hypothetical protein
1288	 47.55	0	1514983..1516002	+	339	123441691	-	YE1359	-	putative transposase for IS1667
1289	 46.58	0	1516482..1516949	-	155	123441692	-	YE1361	-	hypothetical protein
1290	 49.34	0	1516990..1517520	-	176	123441693	gntV	YE1362	-	putative thermosensitive gluconokinase
1291	 43.66	0	1517663..1518427	-	254	123441694	idnO	YE1363	-	gluconate 5-dehydrogenase
1292	 45.52	0	1518810..1519802	+	330	123441695	-	YE1364	-	LacI family transcriptional regulatory protein
1293	 45.87	0	1520242..1521150	+	302	123441696	-	YE1365	-	putative D-isomer specific 2-hydroxyacid dehydrogenase family protein
1294	 47.91	0	1521325..1522641	+	438	123441697	-	YE1366	-	putative sugar transporter
1295	 51.08	0	1522704..1523210	+	168	123441698	-	YE1367	-	hypothetical protein
1296	 54.46	+1	1523214..1525031	+	605	123441699	edd	YE1368	-	phosphogluconate dehydratase
1297	 50.49	0	1525083..1526504	-	473	123441700	-	YE1369	-	putative dehydrogenase, cytochrome C subunit
1298	 53.24	+1	1526501..1528153	-	550	123441701	-	YE1370	-	putative dehydrogenase subunit
1299	 52.41	0	1528153..1528734	-	193	123441702	-	YE1370A	-	putative dehydrogenase subunit
1300	 51.46	0	1529089..1529397	+	102	123441703	elaB	YE1371	-	hypothetical protein
1301	 41.40	-1	1529782..1532073	+	763	123441704	-	YE1372	-	putative autotransporter protein
1302	 49.15	0	1532262..1533620	+	452	123441705	menF	YE1373	-	menaquinone-specific isochorismate synthase
1303	 55.38	+1	1533849..1535522	+	557	123441706	menD	YE1375	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1304	 53.20	+1	1535609..1536343	+	244	123441707	-	YE1376	-	acyl-CoA thioester hydrolase YfbB
1305	 49.88	0	1536357..1537214	+	285	123441708	menB	YE1377	-	naphthoate synthase
1306	 55.97	+1	1537214..1538185	+	323	123441709	menC	YE1378	-	O-succinylbenzoate synthase
1307	 54.08	+1	1538356..1539594	+	412	123441710	menE	YE1379	-	O-succinylbenzoic acid--CoA ligase
1308	 49.41	0	1539790..1541232	-	480	123441711	katA	YE1380	-	catalase
1309	 51.57	0	1541620..1542129	+	169	123441712	-	YE1381	-	hypothetical protein
1310	 50.04	0	1542202..1543410	-	402	123441713	tyrP	YE1382	-	tyrosine-specific transport protein
1311	 54.44	+1	1543640..1544833	+	397	123441714	-	YE1383	-	competence damage-inducible protein A
1312	 39.72	-1	1545840..1546622	+	260	123441715	-	YE1386	-	hypothetical protein
1313	 38.61	-1	1546634..1547410	+	258	123441716	-	YE1387	-	hypothetical protein
1314	 37.66	-2	1547422..1548207	+	261	123441717	-	YE1388	-	hypothetical protein
1315	 49.52	0	1548219..1553630	+	1803	123441718	-	YE1389	-	putative serine protease
1316	 50.30	0	1553727..1554233	-	168	123441719	eco	YE1390	-	ecotin precursor
1317	 51.63	0	1554492..1554737	-	81	123441720	-	YE1391	-	2Fe-2S ferredoxin YfaE
1318	 46.15	0	1554877..1556007	-	376	123441721	nrdB	YE1392	-	ribonucleotide-diphosphate reductase subunit beta
1319	 49.17	0	1556093..1558378	-	761	123441722	dnaF	YE1393	-	ribonucleotide-diphosphate reductase subunit alpha
1320	 48.70	0	1558895..1559623	-	242	123441723	pufX	YE1394	-	3-demethylubiquinone-9 3-methyltransferase
1321	 50.87	0	1559825..1562482	+	885	123441724	gyrA	YE1395	-	DNA gyrase subunit A
1322	 44.67	0	1562600..1565467	+	955	123441725	rcsC	YE1396	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
1323	 40.74	-1	1565655..1566302	-	215	123441726	rcsB	YE1397	-	transcriptional regulator RcsB
1324	 42.09	-1	1566305..1568998	-	897	123441727	-	YE1398	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC
1325	 53.42	+1	1569021..1570175	-	384	123441728	-	YE1399	-	hypothetical protein
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.