IslandPathversion 1.0

IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.74 STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1096	 49.00	0	1298422..1299021	+	199	123441499	napC	YE1158	-	cytochrome c-type protein NapC
1097	 42.46	-1	1299175..1299426	+	83	123441500	-	YE1159	-	hypothetical protein
1098	 39.93	-1	1299423..1299710	+	95	123441501	-	YE1160	-	hypothetical protein
1099	 43.75	0	1299739..1300314	+	191	123441502	-	YE1161	-	hypothetical protein
1100	 50.44	0	1300535..1302814	+	759	123441503	maeB	YE1162	-	malic enzyme
1101	 47.35	0	1303231..1304250	-	339	123441504	-	YE1163	-	putative transposase for IS1667
1102	 30.13	-2	1304987..1305673	+	228	123441505	-	YE1165	-	LuxR family transcriptional regulatory protein
1103	 39.53	-1	1305680..1306582	-	300	123441506	-	YE1166	-	LysR family transcriptional regulator
1104	 47.28	0	1306694..1307152	-	152	123441507	-	YE1167	-	hypothetical protein
1105	 49.51	0	1307152..1308078	-	308	123441508	hemF	YE1168	-	coproporphyrinogen III oxidase
1106	 49.30	0	1308309..1308734	+	141	123441509	-	YE1169	-	putative acetyltransferase
1107	 47.10	0	1308992..1310110	+	372	123441510	-	YE1170	-	putative integrase/recombinase protein
1108	 26.21	-2	1310337..1311557	+	406	123441511	-	YE1171	-	putative maturase protein
1109	 28.20	-2	1311562..1313568	+	668	123441512	-	YE1172	-	putative DNA-binding protein
1110	 42.89	-1	1314461..1315768	-	435	123441513	-	YE1175	-	hypothetical protein
1111	 44.36	0	1315768..1316175	-	135	123441514	-	YE1175A	-	Cro/CI family transcriptional regulator
1112	 42.67	-1	1316273..1316497	-	74	123441515	-	YE1176	-	hypothetical protein
1113	 44.90	0	1316984..1318384	-	466	123441516	-	YE1177	-	putative conjugal transfer protein
1114	 46.11	0	1318398..1318577	-	59	123441517	-	YE1177A	-	hypothetical protein
1115	 48.85	0	1318588..1319367	-	259	123441518	-	YE1178	-	putative conjugal transfer protein
1116	 38.96	-1	1319687..1319917	-	76	123441519	-	YE1179	-	hypothetical protein
1117	 37.84	-2	1320077..1320742	+	221	123441520	-	YE1180	-	hypothetical protein
1118	 46.30	0	1320959..1321228	-	89	123441521	-	YE1181	-	hypothetical protein
1119	 41.89	-1	1321502..1322389	-	295	123441522	-	YE1182	-	putative plasmid-related transcriptional repressor protein
1120	 47.77	0	1322394..1322774	-	126	123441523	-	YE1183	-	hypothetical protein
1121	 49.03	0	1323318..1323731	-	137	123441524	ygiW	YE1185	-	hypothetical protein
1122	 46.41	0	1324114..1324725	+	203	123441525	yfeY	YE1186	-	hypothetical protein
1123	 44.81	0	1324901..1325806	+	301	123441526	-	YE1187	-	hypothetical protein
1124	 47.47	0	1325879..1326769	-	296	123441527	nanA	YE1188	-	N-acetylneuraminate lyase
1125	 52.20	0	1326851..1327486	-	211	123441528	-	YE1189	-	N-acetylmannosamine-6-phosphate 2-epimerase
1126	 52.68	+1	1327796..1328710	+	304	123441529	-	YE1190	-	N-acetylmannosamine kinase
1127	 46.23	0	1328792..1329202	+	136	123441530	-	YE1191	-	hypothetical protein
1128	 48.81	0	1329398..1330276	+	292	123441531	-	YE1192	-	rpiR family transcriptional regulatory protein
1129	 50.64	0	1330685..1332157	+	490	123441532	nanT	YE1193	-	putative sialic acid transporter
1130	 48.93	0	1332509..1333444	+	311	123441533	cysP	YE1194	-	thiosulfate transporter subunit
1131	 52.81	+1	1333444..1334280	+	278	123441534	cysT	YE1195	-	sulfate/thiosulfate transporter subunit
1132	 53.20	+1	1334280..1335155	+	291	123441535	cysW	YE1196	-	sulfate/thiosulfate transporter permease subunit
1133	 51.19	0	1335145..1336236	+	363	123441536	cysA	YE1197	-	sulfate/thiosulfate transporter subunit
1134	 54.11	+1	1336464..1337291	+	275	123441537	cysM	YE1198	-	cysteine synthase B
1135	 50.51	0	1337339..1339294	-	651	123441538	-	YE1199	-	putative ABC transporter, ATP-binding protein
1136	 50.21	0	1339325..1340533	-	402	123441539	-	YE1200	-	HlyD family secretion protein
1137	 50.00	0	1340722..1341405	+	227	123441540	-	YE1201	-	putative two-component system response regulator
1138	 50.37	0	1341431..1342798	+	455	123441541	-	YE1202	-	putative two-component system sensor kinase
1139	 51.25	0	1342839..1343636	-	265	123441542	-	YE1203	-	putative transposase for insertion element IS1669
1140	 50.48	0	1343654..1343968	-	104	123441543	-	YE1204	-	IS1669 hypothetical protein
1141	 42.55	-1	1344156..1344665	-	169	123441544	crr	YE1205	-	glucose-specific PTS system component
1142	 48.15	0	1344714..1346441	-	575	123441545	ptsI	YE1206	-	phosphoenolpyruvate-protein phosphotransferase
1143	 48.06	0	1346489..1346746	-	85	123441546	hpr	YE1207	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
1144	 49.33	0	1347198..1348166	-	322	123441547	cysK	YE1208	-	cysteine synthase A
1145	 49.11	0	1348362..1349033	-	223	123441548	cysZ	YE1209	-	putative sulfate transport protein CysZ
1146	 50.64	0	1349310..1350332	+	340	123441549	zipA	YE1210	-	cell division protein ZipA
1147	 51.96	0	1350408..1352426	+	672	123441550	ligA	YE1211	-	NAD-dependent DNA ligase LigA
1148	 48.40	0	1352441..1352659	+	72	123441551	-	YE1212	-	hypothetical protein
1149	 44.44	0	1352849..1353190	-	113	123441552	-	YE1213	-	hypothetical protein
1150	 45.99	0	1353347..1353907	-	186	123441553	-	YE1214	-	hypothetical protein
1151	 49.93	0	1354417..1355832	-	471	123441554	gltX	YE1215	-	glutamyl-tRNA synthetase
1152	 44.47	0	1357395..1358579	-	394	123441555	cru	YE1217	-	nucleoside permease
1153	 49.43	0	1358978..1360207	+	409	123441556	mntH	YE1219	-	manganese transport protein MntH
1154	 44.29	0	1360258..1360686	-	142	123441557	-	YE1220	-	hypothetical protein
1155	 48.08	0	1360857..1361846	-	329	123441558	-	YE1221	-	putative ion channel protein
1156	 50.93	0	1362066..1363730	+	554	123441559	ipdC	YE1222	-	indole-3-pyruvate decarboxylase
1157	 52.25	0	1363702..1364589	-	295	123441560	-	YE1223	-	LysR family transcriptional regulator
1158	 47.59	0	1364691..1365167	+	158	123441561	-	YE1224	-	hypothetical protein
1159	 51.23	0	1365353..1366324	+	323	123441562	glk	YE1225	-	glucokinase
1160	 50.36	0	1366581..1367825	-	414	123441563	-	YE1226	-	putative membrane transport protein
1161	 41.57	-1	1368049..1368789	-	246	123441564	-	YE1227	-	putative two-component system response-regulator
1162	 44.15	0	1368793..1370493	-	566	123441565	-	YE1228	-	two-component system histidine kinase
1163	 49.28	0	1370664..1371911	-	415	123441566	-	YE1229	-	hypothetical protein
1164	 49.56	0	1372113..1372685	+	190	123441567	-	YE1230	-	putative acetyltransferase
1165	 50.89	0	1372817..1374052	+	411	123441568	-	YE1231	-	aminotransferase
1166	 43.62	0	1374220..1374744	+	174	123441569	-	YE1232	-	putative B-type cytochrome
1167	 48.38	0	1375159..1375590	-	143	123441570	-	YE1233	-	hypothetical protein
1168	 45.09	0	1376102..1376773	+	223	123441571	-	YE1234	-	putative lipoprotein
1169	 45.10	0	1376803..1377159	+	118	123441572	-	YE1235	-	putative lipoprotein
1170	 47.79	0	1377156..1377812	+	218	123441573	-	YE1236	-	putative lipoprotein
1171	 38.04	-2	1378318..1378848	+	176	123441574	-	YE1237	-	hypothetical protein
1172	 51.02	0	1378874..1379512	-	212	123441575	yfuD	YE1238	-	putative membrane transport protein
1173	 50.95	0	1379635..1380684	-	349	123441576	sfuC	YE1239	-	iron(III)-transport ATP-binding protein
1174	 52.43	0	1380681..1382267	-	528	123441577	sfuB	YE1240	-	iron(III)-transport system permease
1175	 48.18	0	1382354..1383370	-	338	123441578	sfuA	YE1241	-	iron(III)-binding periplasmic protein
1176	 50.78	0	1383664..1384758	+	364	123441579	mltB	YE1242	-	murein hydrolase B
1177	 49.89	0	1384987..1386327	-	446	123441580	-	YE1243	-	putative eamino acid permease
1178	 53.21	+1	1386752..1388482	-	576	123441581	-	YE1244	-	hypothetical protein
1179	 49.58	0	1388642..1389232	-	196	123441582	-	YE1245	-	TetR family regulatory protein
1180	 51.94	0	1389366..1390859	+	497	123441583	-	YE1246	-	major facilitator transporter
1181	 49.13	0	1391203..1392348	+	381	123441584	-	YE1247	-	ABC transporter, membrane permease
1182	 53.86	+1	1392345..1393148	+	267	123441585	-	YE1248	-	ABC transporter, ATP-binding component
1183	 49.36	0	1393149..1394090	+	313	123441586	-	YE1249	-	hypothetical protein
1184	 51.10	0	1394087..1394722	+	211	123441587	-	YE1250	-	hypothetical protein
1185	 37.48	-2	1394764..1395558	-	264	123441588	-	YE1251	-	putative regulatory protein
1186	 43.47	0	1395649..1396575	-	308	123441589	-	YE1252	-	hypothetical protein
1187	 43.06	0	1396957..1397511	+	184	123441590	-	YE1253	-	hypothetical protein
1188	 42.14	-1	1397537..1398115	+	192	123441591	-	YE1254	-	hypothetical protein
1189	 41.38	-1	1398513..1399544	-	343	123441592	ascG	YE1255	-	putative regulatory protein
1190	 49.28	0	1399879..1401345	+	488	123441593	ascF	YE1256	-	cellobiose/arbutin/salicin-specific PTS system components IIBC
1191	 43.75	0	1401361..1402791	+	476	123441594	ascB	YE1257	-	cryptic 6-phospho-beta-glucosidase
1192	 45.51	0	1402884..1403195	-	103	123441595	-	YE1258	-	hypothetical protein
1193	 47.12	0	1403195..1403854	-	219	123441596	-	YE1259	-	hypothetical protein
1194	 43.54	0	1404268..1404600	-	110	123441597	-	YE1260	-	hypothetical protein
1195	 45.72	0	1405460..1406371	-	303	123441598	-	YE1262	-	putative inner membrane protein
47.74	MEAN

4.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.