IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
856	 47.79	0	819968..820216	+	82	15837461	-	XF0859	-	hypothetical protein
857	 45.34	-1	820210..820917	-	235	15837462	-	XF0860	-	hypothetical protein
858	 51.69	0	821212..821478	+	88	15837463	-	XF0861	-	hypothetical protein
859	 58.88	+1	821561..822433	-	290	77747523	-	XF0862	-	hypothetical protein
860	 54.62	0	822754..823791	+	345	15837465	-	XF0863	-	homoserine O-acetyltransferase
861	 55.99	0	823788..825005	+	405	15837466	-	XF0864	-	cystathionine gamma-synthase
862	 50.31	0	825067..825225	+	52	15837467	-	XF0865	-	hypothetical protein
863	 53.83	0	825372..826337	+	321	15837468	-	XF0866	-	cobalt-zinc-cadmium resistance protein
864	 54.57	0	826353..826691	+	112	15837469	-	XF0867	-	hypothetical protein
865	 56.02	0	827092..828903	-	603	15837470	-	XF0868	-	dihydrolipoamide dehydrogenase
866	 53.26	0	828949..830604	-	551	15837471	-	XF0869	-	dihydrolipoamide acetyltransferase
867	 44.07	-1	830897..831073	+	58	15837472	-	XF0870	-	hypothetical protein
868	 45.33	-1	831239..831463	+	74	15837473	-	XF0871	-	hypothetical protein
869	 48.35	0	831594..832139	+	181	15837474	-	XF0872	-	outer membrane protein
870	 49.49	0	832245..833030	-	261	15837475	-	XF0873	-	outer membrane protein
871	 56.07	0	833124..833831	-	235	15837476	-	XF0874	-	ABC transporter permease protein
872	 55.32	0	833828..834832	-	334	15837477	-	XF0875	-	ABC transporter ATP-binding protein
873	 49.51	0	835250..835558	-	102	15837478	-	XF0876	-	hypothetical protein
874	 50.16	0	835819..836133	+	104	15837479	-	XF0877	-	hypothetical protein
875	 56.46	0	836126..836899	+	257	15837480	-	XF0878	-	hypothetical protein
876	 57.77	0	836896..838008	+	370	15837481	-	XF0879	-	lipopolysaccharide biosynthesis protein
877	 51.28	0	838143..838805	+	220	15837482	-	XF0880	-	carbonic anhydrase
878	 53.37	0	838834..839442	+	202	15837483	-	XF0881	-	hypothetical protein
879	 59.10	+1	839676..841802	-	708	15837484	-	XF0882	-	ATP-dependent helicase
880	 59.14	+1	841823..842380	-	185	15837485	-	XF0883	-	hypothetical protein
881	 57.56	0	842377..844803	-	808	77747524	-	XF0884	-	penicillin binding protein 1B
882	 57.33	0	845057..846181	+	374	77747525	-	XF0885	-	hypothetical protein
883	 54.55	0	846203..846433	+	76	15837488	-	XF0886	-	hypothetical protein
884	 56.79	0	846430..849012	+	860	15837489	-	XF0887	-	mannosyltransferase
885	 53.33	0	849013..849192	-	59	15837490	-	XF0888	-	hypothetical protein
886	 66.13	+2	849238..859086	+	3282	15837491	-	XF0889	-	hemagglutinin-like secreted protein
887	 55.95	0	859344..860192	+	282	15837492	-	XF0890	-	hypothetical protein
888	 58.64	+1	860277..861260	+	327	15837493	-	XF0891	-	hypothetical protein
889	 55.48	0	861481..862329	+	282	15837494	-	XF0892	-	hypothetical protein
890	 61.98	+1	862384..862788	+	134	15837495	-	XF0893	-	hypothetical protein
891	 56.18	0	862801..863649	+	282	15837496	-	XF0894	-	hypothetical protein
892	 57.16	0	863870..864721	+	283	15837497	-	XF0895	-	hypothetical protein
893	 57.63	0	864942..865793	+	283	15837498	-	XF0896	-	hypothetical protein
894	 60.87	+1	865790..866617	+	275	15837499	-	XF0897	-	hypothetical protein
895	 49.15	0	866864..867217	-	117	15837500	-	XF0898	-	hypothetical protein
896	 46.03	0	867221..867409	-	62	15837501	-	XF0899	-	hypothetical protein
897	 56.83	0	867800..868897	-	365	15837502	-	XF0900	-	magnesium and cobalt transport protein
898	 55.97	0	870030..871001	-	323	15837503	-	XF0901	-	polar amino acid transporter
899	 57.33	0	871010..871534	-	174	15837504	-	XF0902	-	hypothetical protein
900	 55.97	0	871534..872019	-	161	15837505	-	XF0903	-	putative metalloprotease
901	 54.47	0	872090..873073	-	327	15837506	-	XF0904	-	ATP-binding protein
902	 40.00	-1	873199..873393	-	64	15837507	-	XF0905	-	hypothetical protein
903	 55.82	0	873404..874897	-	497	15837508	-	XF0906	-	hypothetical protein
904	 54.36	0	875047..875940	+	297	15837509	-	XF0907	-	soluble lytic murein transglycosylase precursor
905	 55.45	0	876078..876710	+	210	15837510	-	XF0908	-	ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit
906	 49.72	0	876715..877977	+	420	15837511	-	XF0909	-	ubiquinol cytochrome C oxidoreductase, cytochrome B subunit
907	 51.18	0	877970..878731	+	253	15837512	-	XF0910	-	ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
908	 48.27	0	878873..879508	+	211	15837513	-	XF0911	-	stringent starvation protein A
909	 53.97	0	879539..879979	+	146	15837514	-	XF0912	-	ClpXP protease specificity-enhancing factor
910	 53.82	0	879990..880775	+	261	15837515	-	XF0913	-	tropinone reductase
911	 49.30	0	880998..881423	+	141	15837516	-	XF0914	-	hypothetical protein
912	 51.95	0	881586..881918	+	110	15837517	-	XF0915	-	hypothetical protein
913	 45.53	-1	881959..882204	+	81	15837518	-	XF0916	-	hypothetical protein
914	 41.87	-1	882189..882563	+	124	15837519	-	XF0917	-	hypothetical protein
915	 46.36	0	882560..883204	+	214	15837520	-	XF0918	-	acyl-[ACP]-UDP-N-acetylglucosamine
916	 58.16	0	883569..884132	-	187	15837521	-	XF0919	-	hypothetical protein
917	 51.92	0	884246..886693	-	815	15837522	-	XF0920	-	DNA topoisomerase III
918	 47.95	0	886899..887117	+	72	15837523	-	XF0921	-	hypothetical protein
919	 50.00	0	887479..887652	+	57	15837524	-	XF0922	-	hypothetical protein
920	 52.74	0	887701..888174	-	157	15837525	-	XF0923	-	hypothetical protein
921	 57.65	0	888220..889383	-	387	15837526	-	XF0924	-	DNA processing chain A
922	 54.03	0	889456..890634	-	392	15837527	-	XF0925	-	hypothetical protein
923	 53.80	0	890749..891261	+	170	15837528	def	XF0926	-	peptide deformylase
924	 59.31	+1	891367..892290	+	307	15837529	fmt	XF0927	-	methionyl-tRNA formyltransferase
925	 59.08	+1	892311..893576	+	421	15837530	-	XF0928	-	hypothetical protein
926	 55.71	0	893615..895330	+	571	77747526	-	XF0929	-	hypothetical protein
927	 49.16	0	895550..895846	+	98	15837532	-	XF0930	-	hypothetical protein
928	 49.12	0	895887..896057	-	56	15837533	-	XF0931	-	hypothetical protein
929	 57.94	0	896282..896533	+	83	15837534	-	XF0932	-	ferrous iron transport protein
930	 54.42	0	896526..898379	+	617	15837535	-	XF0933	-	ferrous iron transport protein B
931	 56.35	0	898383..898634	+	83	15837536	-	XF0934	-	hypothetical protein
932	 52.78	0	898699..899634	+	311	15837537	-	XF0935	-	methyltransferase
933	 51.46	0	899631..900761	+	376	15837538	-	XF0936	-	hypothetical protein
934	 48.21	0	900732..901121	-	129	15837539	-	XF0937	-	hypothetical protein
935	 54.47	0	901122..902015	-	297	15837540	-	XF0938	-	hypothetical protein
936	 57.43	0	902103..903098	+	331	15837541	-	XF0939	-	ribosomal large subunit pseudouridine synthase D
937	 58.49	+1	903100..903882	+	260	15837542	-	XF0940	-	hypothetical protein
938	 54.03	0	904363..904821	+	152	15837543	-	XF0941	-	hypothetical protein
939	 52.99	0	904986..906674	-	562	15837544	-	XF0942	-	malate:quinone oxidoreductase
940	 27.62	-2	906761..906865	+	34	15837545	-	XF0943	-	hypothetical protein
941	 53.57	0	907231..908895	-	554	15837546	-	XF0944	-	putative ABC transporter ATP-binding protein
942	 49.54	0	909058..909273	-	71	15837547	-	XF0945	-	hypothetical protein
943	 53.57	0	909556..910830	+	424	15837548	glyA	XF0946	-	serine hydroxymethyltransferase
944	 49.00	0	910959..911456	+	165	15837549	-	XF0947	-	hypothetical protein
945	 54.76	0	911484..912029	+	181	15837550	-	XF0948	-	transcriptional regulator NrdR
946	 52.71	0	912136..912393	+	85	15837551	-	XF0949	-	hypothetical protein
947	 58.72	+1	912455..913549	+	364	15837552	-	XF0950	-	riboflavin-specific deaminase
948	 57.50	0	913782..914021	-	79	15837553	-	XF0951	-	hypothetical protein
949	 55.56	0	914136..914738	+	200	15837554	-	XF0952	-	riboflavin synthase subunit alpha
950	 57.32	0	914735..915868	+	377	15837555	-	XF0953	-	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase
951	 55.48	0	915898..916362	+	154	15837556	ribH	XF0954	-	riboflavin synthase subunit beta
952	 53.16	0	916359..916832	+	157	15837557	nusB	XF0955	-	transcription antitermination protein NusB
953	 56.21	0	916923..917897	+	324	15837558	-	XF0956	-	thiamine monophosphate kinase
954	 52.44	0	918607..918831	+	74	15837559	-	XF0957	-	hypothetical protein
955	 50.35	0	918941..919222	+	93	15837560	-	XF0958	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.