IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
826	 52.63	0	782674..782901	+	75	15837431	-	XF0829	-	hypothetical protein
827	 57.07	0	782958..783374	-	138	15837432	-	XF0830	-	hypothetical protein
828	 58.36	0	783385..784383	-	332	15837433	-	XF0831	-	cysteine synthase
829	 61.71	+1	784408..785838	-	476	15837434	-	XF0832	-	siroheme synthase
830	 57.22	0	785990..786973	+	327	161378172	-	XF0833	-	transcriptional regulator CysB-like protein
831	 61.40	+1	787165..788361	-	398	15837436	-	XF0834	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
832	 61.62	+1	788343..789551	-	402	15837437	-	XF0835	-	2-octaprenyl-6-methoxyphenyl hydroxylase
833	 52.65	0	789746..790009	-	87	15837438	-	XF0836	-	hypothetical protein
834	 52.21	0	790042..792420	+	792	15837439	-	XF0837	-	organic solvent tolerance protein
835	 54.19	0	792417..793811	+	464	15837440	-	XF0838	-	peptidyl-prolyl cis-trans isomerase
836	 58.81	+1	793815..794807	+	330	15837441	pdxA	XF0839	-	4-hydroxythreonine-4-phosphate dehydrogenase
837	 58.73	+1	795191..797029	-	612	15837442	-	XF0840	-	beta-galactosidase
838	 57.86	0	797028..797186	+	52	15837443	-	XF0841	-	hypothetical protein
839	 60.85	+1	797255..799627	-	790	15837444	-	XF0842	-	hypothetical protein
840	 59.51	+1	799685..801235	-	516	15837445	-	XF0843	-	hypothetical protein
841	 56.38	0	801212..801493	+	93	15837446	-	XF0844	-	hypothetical protein
842	 62.82	+1	801585..804233	-	882	15837447	-	XF0845	-	family 3 glycoside hydrolase
843	 61.29	+1	804318..806993	-	891	15837448	-	XF0846	-	beta-mannosidase precursor
844	 60.37	+1	807008..809533	-	841	15837449	-	XF0847	-	beta-hexosaminidase precursor
845	 54.73	0	809508..810563	-	351	15837450	-	XF0848	-	hypothetical protein
846	 57.48	0	810753..811220	-	155	15837451	-	XF0849	-	methionine sulfoxide reductase B
847	 49.51	0	811295..811498	+	67	15837452	-	XF0850	-	hypothetical protein
848	 55.96	0	811609..812916	+	435	15837453	-	XF0851	-	D-amino acid dehydrogenase small subunit
849	 54.74	0	812886..813983	+	365	15837454	alr	XF0852	-	alanine racemase
850	 53.60	0	814460..815959	+	499	15837455	-	XF0853	-	two-component system, sensor protein
851	 53.33	0	816235..816444	+	69	15837456	-	XF0854	-	hypothetical protein
852	 53.77	0	817122..817850	-	242	15837457	-	XF0855	-	lipoprotein
853	 54.53	0	817850..818467	-	205	15837458	-	XF0856	-	hypothetical protein
854	 56.19	0	818487..819164	-	225	15837459	-	XF0857	-	L-isoaspartate O-methyltransferase
855	 57.41	0	819161..819949	-	262	15837460	surE	XF0858	-	stationary phase survival protein SurE
856	 47.79	0	819968..820216	+	82	15837461	-	XF0859	-	hypothetical protein
857	 45.34	-1	820210..820917	-	235	15837462	-	XF0860	-	hypothetical protein
858	 51.69	0	821212..821478	+	88	15837463	-	XF0861	-	hypothetical protein
859	 58.88	+1	821561..822433	-	290	77747523	-	XF0862	-	hypothetical protein
860	 54.62	0	822754..823791	+	345	15837465	-	XF0863	-	homoserine O-acetyltransferase
861	 55.99	0	823788..825005	+	405	15837466	-	XF0864	-	cystathionine gamma-synthase
862	 50.31	0	825067..825225	+	52	15837467	-	XF0865	-	hypothetical protein
863	 53.83	0	825372..826337	+	321	15837468	-	XF0866	-	cobalt-zinc-cadmium resistance protein
864	 54.57	0	826353..826691	+	112	15837469	-	XF0867	-	hypothetical protein
865	 56.02	0	827092..828903	-	603	15837470	-	XF0868	-	dihydrolipoamide dehydrogenase
866	 53.26	0	828949..830604	-	551	15837471	-	XF0869	-	dihydrolipoamide acetyltransferase
867	 44.07	-1	830897..831073	+	58	15837472	-	XF0870	-	hypothetical protein
868	 45.33	-1	831239..831463	+	74	15837473	-	XF0871	-	hypothetical protein
869	 48.35	0	831594..832139	+	181	15837474	-	XF0872	-	outer membrane protein
870	 49.49	0	832245..833030	-	261	15837475	-	XF0873	-	outer membrane protein
871	 56.07	0	833124..833831	-	235	15837476	-	XF0874	-	ABC transporter permease protein
872	 55.32	0	833828..834832	-	334	15837477	-	XF0875	-	ABC transporter ATP-binding protein
873	 49.51	0	835250..835558	-	102	15837478	-	XF0876	-	hypothetical protein
874	 50.16	0	835819..836133	+	104	15837479	-	XF0877	-	hypothetical protein
875	 56.46	0	836126..836899	+	257	15837480	-	XF0878	-	hypothetical protein
876	 57.77	0	836896..838008	+	370	15837481	-	XF0879	-	lipopolysaccharide biosynthesis protein
877	 51.28	0	838143..838805	+	220	15837482	-	XF0880	-	carbonic anhydrase
878	 53.37	0	838834..839442	+	202	15837483	-	XF0881	-	hypothetical protein
879	 59.10	+1	839676..841802	-	708	15837484	-	XF0882	-	ATP-dependent helicase
880	 59.14	+1	841823..842380	-	185	15837485	-	XF0883	-	hypothetical protein
881	 57.56	0	842377..844803	-	808	77747524	-	XF0884	-	penicillin binding protein 1B
882	 57.33	0	845057..846181	+	374	77747525	-	XF0885	-	hypothetical protein
883	 54.55	0	846203..846433	+	76	15837488	-	XF0886	-	hypothetical protein
884	 56.79	0	846430..849012	+	860	15837489	-	XF0887	-	mannosyltransferase
885	 53.33	0	849013..849192	-	59	15837490	-	XF0888	-	hypothetical protein
886	 66.13	+2	849238..859086	+	3282	15837491	-	XF0889	-	hemagglutinin-like secreted protein
887	 55.95	0	859344..860192	+	282	15837492	-	XF0890	-	hypothetical protein
888	 58.64	+1	860277..861260	+	327	15837493	-	XF0891	-	hypothetical protein
889	 55.48	0	861481..862329	+	282	15837494	-	XF0892	-	hypothetical protein
890	 61.98	+1	862384..862788	+	134	15837495	-	XF0893	-	hypothetical protein
891	 56.18	0	862801..863649	+	282	15837496	-	XF0894	-	hypothetical protein
892	 57.16	0	863870..864721	+	283	15837497	-	XF0895	-	hypothetical protein
893	 57.63	0	864942..865793	+	283	15837498	-	XF0896	-	hypothetical protein
894	 60.87	+1	865790..866617	+	275	15837499	-	XF0897	-	hypothetical protein
895	 49.15	0	866864..867217	-	117	15837500	-	XF0898	-	hypothetical protein
896	 46.03	0	867221..867409	-	62	15837501	-	XF0899	-	hypothetical protein
897	 56.83	0	867800..868897	-	365	15837502	-	XF0900	-	magnesium and cobalt transport protein
898	 55.97	0	870030..871001	-	323	15837503	-	XF0901	-	polar amino acid transporter
899	 57.33	0	871010..871534	-	174	15837504	-	XF0902	-	hypothetical protein
900	 55.97	0	871534..872019	-	161	15837505	-	XF0903	-	putative metalloprotease
901	 54.47	0	872090..873073	-	327	15837506	-	XF0904	-	ATP-binding protein
902	 40.00	-1	873199..873393	-	64	15837507	-	XF0905	-	hypothetical protein
903	 55.82	0	873404..874897	-	497	15837508	-	XF0906	-	hypothetical protein
904	 54.36	0	875047..875940	+	297	15837509	-	XF0907	-	soluble lytic murein transglycosylase precursor
905	 55.45	0	876078..876710	+	210	15837510	-	XF0908	-	ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit
906	 49.72	0	876715..877977	+	420	15837511	-	XF0909	-	ubiquinol cytochrome C oxidoreductase, cytochrome B subunit
907	 51.18	0	877970..878731	+	253	15837512	-	XF0910	-	ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
908	 48.27	0	878873..879508	+	211	15837513	-	XF0911	-	stringent starvation protein A
909	 53.97	0	879539..879979	+	146	15837514	-	XF0912	-	ClpXP protease specificity-enhancing factor
910	 53.82	0	879990..880775	+	261	15837515	-	XF0913	-	tropinone reductase
911	 49.30	0	880998..881423	+	141	15837516	-	XF0914	-	hypothetical protein
912	 51.95	0	881586..881918	+	110	15837517	-	XF0915	-	hypothetical protein
913	 45.53	-1	881959..882204	+	81	15837518	-	XF0916	-	hypothetical protein
914	 41.87	-1	882189..882563	+	124	15837519	-	XF0917	-	hypothetical protein
915	 46.36	0	882560..883204	+	214	15837520	-	XF0918	-	acyl-[ACP]-UDP-N-acetylglucosamine
916	 58.16	0	883569..884132	-	187	15837521	-	XF0919	-	hypothetical protein
917	 51.92	0	884246..886693	-	815	15837522	-	XF0920	-	DNA topoisomerase III
918	 47.95	0	886899..887117	+	72	15837523	-	XF0921	-	hypothetical protein
919	 50.00	0	887479..887652	+	57	15837524	-	XF0922	-	hypothetical protein
920	 52.74	0	887701..888174	-	157	15837525	-	XF0923	-	hypothetical protein
921	 57.65	0	888220..889383	-	387	15837526	-	XF0924	-	DNA processing chain A
922	 54.03	0	889456..890634	-	392	15837527	-	XF0925	-	hypothetical protein
923	 53.80	0	890749..891261	+	170	15837528	def	XF0926	-	peptide deformylase
924	 59.31	+1	891367..892290	+	307	15837529	fmt	XF0927	-	methionyl-tRNA formyltransferase
925	 59.08	+1	892311..893576	+	421	15837530	-	XF0928	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.