IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
722	 60.04	+1	682064..682621	+	185	15837327	-	XF0725	-	phage-related tail protein
723	 57.79	0	683072..684220	+	382	15837328	-	XF0726	-	hypothetical protein
724	 57.93	0	684273..685463	+	396	15837329	-	XF0727	-	phage tail sheath protein
725	 53.33	0	685463..685972	+	169	15837330	-	XF0728	-	phage tail tube protein
726	 54.86	0	685975..686262	+	95	15837331	-	XF0729	-	hypothetical protein
727	 58.33	0	686389..688608	+	739	15837332	-	XF0730	-	phage-related tail protein
728	 59.42	+1	688605..689087	+	160	15837333	-	XF0731	-	phage-related tail protein
729	 61.19	+1	689084..689302	+	72	15837334	-	XF0732	-	phage-related tail protein
730	 58.91	+1	689293..690375	+	360	15837335	-	XF0733	-	phage-related tail protein
731	 62.02	+1	690409..690537	-	42	15837336	-	XF0734	-	hypothetical protein
732	 44.00	-1	690919..691293	-	124	15837337	-	XF0735	-	hypothetical protein
733	 51.47	0	691467..693374	+	635	15837338	-	XF0736	-	threonyl-tRNA synthetase
734	 49.58	0	693490..693969	+	159	15837339	infC	XF0737	-	translation initiation factor IF-3
735	 42.71	-1	694154..694249	+	31	15837340	-	XF0738	-	hypothetical protein
736	 52.02	0	694230..694427	+	65	15837341	rpmI	XF0739	-	50S ribosomal protein L35
737	 49.44	0	694438..694797	+	119	15837342	rplT	XF0740	-	50S ribosomal protein L20
738	 50.60	0	695069..696070	+	333	15837343	pheS	XF0741	-	phenylalanyl-tRNA synthetase subunit alpha
739	 54.69	0	696154..698532	+	792	15837344	pheT	XF0742	-	phenylalanyl-tRNA synthetase subunit beta
740	 46.67	0	698556..698855	+	99	15837345	ihfA	XF0743	-	integration host factor subunit alpha
741	 53.99	0	698830..699192	+	120	15837346	-	XF0744	-	hypothetical protein
742	 59.17	+1	699444..699563	+	39	15837347	-	XF0745	-	hypothetical protein
743	 53.99	0	699868..700143	+	91	15837348	-	XF0746	-	hypothetical protein
744	 53.96	0	700140..700871	-	243	15837349	-	XF0747	-	hypothetical protein
745	 55.68	0	700887..701942	+	351	15837350	-	XF0748	-	putative RNA 2'-O-ribose methyltransferase
746	 50.37	0	702728..703132	-	134	15837351	-	XF0749	-	virulence regulator
747	 43.43	-1	703259..703357	-	32	15837352	-	XF0750	-	hypothetical protein
748	 52.89	0	703411..704499	-	362	15837353	-	XF0751	-	ribonuclease D
749	 58.97	+1	704814..706424	+	536	77747514	-	XF0752	-	hypothetical protein
750	 55.91	0	706483..706668	-	61	15837355	-	XF0753	-	hypothetical protein
751	 55.94	0	706550..707407	+	285	77747515	-	XF0754	-	virulence protein
752	 59.40	+1	707473..708807	-	444	15837357	xseA	XF0755	-	exodeoxyribonuclease VII large subunit
753	 55.95	0	708799..709050	+	83	15837358	-	XF0756	-	hypothetical protein
754	 62.64	+1	709257..710747	+	496	77747516	-	XF0757	-	hypothetical protein
755	 57.87	0	710744..711232	+	162	15837360	-	XF0758	-	hypothetical protein
756	 57.96	0	711291..712910	+	539	15837361	-	XF0759	-	N-acetylmuramoyl-L-alanine amidase precursor
757	 58.55	+1	713046..714905	+	619	15837362	mutL	XF0760	-	DNA mismatch repair protein
758	 55.77	0	714950..715867	+	305	15837363	-	XF0761	-	hypothetical protein
759	 52.26	0	716136..716711	-	191	15837364	dcd	XF0762	-	deoxycytidine triphosphate deaminase
760	 46.94	0	716788..717081	-	97	15837365	-	XF0763	-	hypothetical protein
761	 56.10	0	717284..718078	-	264	15837366	-	XF0764	-	membrane protein
762	 55.10	0	718066..718506	-	146	15837367	-	XF0765	-	hypothetical protein
763	 58.09	0	718503..718910	-	135	15837368	-	XF0766	-	hypothetical protein
764	 55.36	0	718907..719251	-	114	15837369	-	XF0767	-	ArsR family transcriptional regulator
765	 57.33	0	719245..720540	-	431	15837370	-	XF0768	-	hypothetical protein
766	 54.88	0	720966..721856	-	296	77747517	-	XF0769	-	pteridine-dependent deoxygenase
767	 51.82	0	721873..722283	-	136	15837372	-	XF0770	-	hypothetical protein
768	 51.11	0	722310..722579	+	89	77747518	-	XF0771	-	acyl carrier protein
769	 55.60	0	722554..723294	+	246	15837374	-	XF0772	-	hypothetical protein
770	 50.48	0	723417..723521	-	34	15837375	-	XF0773	-	hypothetical protein
771	 59.38	+1	723536..723823	+	95	77747519	-	XF0774	-	hypothetical protein
772	 54.64	0	723820..724800	+	326	15837377	-	XF0775	-	hypothetical protein
773	 54.67	0	725350..725574	+	74	15837378	-	XF0776	-	hypothetical protein
774	 57.54	0	725567..727933	+	788	15837379	-	XF0777	-	membrane protein
775	 44.79	-1	728706..730826	-	706	15837380	-	XF0778	-	O-antigen acetylase
776	 39.27	-2	730806..731462	+	218	15837381	-	XF0779	-	hypothetical protein
777	 54.32	0	731613..731855	+	80	15837382	-	XF0780	-	hypothetical protein
778	 55.46	0	732248..734041	-	597	15837383	-	XF0781	-	lipase/esterase
779	 50.88	0	734156..734383	+	75	15837384	-	XF0782	-	sulfur carrier protein ThiS
780	 53.74	0	734399..735226	+	275	15837385	thiG	XF0783	-	thiazole synthase
781	 51.97	0	735223..735957	+	244	15837386	trmB	XF0784	-	tRNA (guanine-N(7))-methyltransferase
782	 52.76	0	735988..737850	+	620	15837387	-	XF0785	-	sulfur deprivation response regulator
783	 35.71	-2	738072..738239	+	55	15837388	-	XF0786	-	hypothetical protein
784	 45.41	-1	738450..738656	+	68	15837389	-	XF0787	-	hypothetical protein
785	 40.38	-1	738707..738862	+	51	15837390	-	XF0788	-	hypothetical protein
786	 50.68	0	739092..739604	+	170	15837391	-	XF0789	-	cell division protein MraZ
787	 56.48	0	739660..740601	+	313	15837392	mraW	XF0790	-	S-adenosyl-methyltransferase MraW
788	 51.89	0	740598..740861	+	87	15837393	-	XF0791	-	cell division protein
789	 54.78	0	740858..742699	+	613	15837394	-	XF0792	-	penicillin binding protein 3
790	 57.19	0	742696..744183	+	495	15837395	murE	XF0793	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
791	 56.93	0	744180..745586	+	468	15837396	-	XF0794	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
792	 49.45	0	745576..746661	+	361	15837397	mraY	XF0795	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
793	 51.49	0	746661..747932	+	423	15837398	-	XF0796	-	cell division protein
794	 54.08	0	747929..749032	+	367	15837399	murG	XF0797	-	N-acetylglucosaminyl transferase
795	 53.84	0	749088..750521	+	477	15837400	murC	XF0798	-	UDP-N-acetylmuramate--L-alanine ligase
796	 53.58	0	750524..751486	+	320	15837401	ddl	XF0799	-	D-alanine--D-alanine ligase
797	 56.03	0	751593..752429	+	278	15837402	-	XF0800	-	cell division protein
798	 52.91	0	752426..753661	+	411	15837403	-	XF0801	-	cell division protein
799	 54.45	0	753831..755066	+	411	77747520	-	XF0802	-	cell division protein FtsZ
800	 50.27	0	755439..756353	+	304	15837405	lpxC	XF0803	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
801	 42.12	-1	756513..756785	-	90	15837406	-	XF0804	-	hypothetical protein
802	 50.73	0	756966..757925	+	319	15837407	-	XF0805	-	hypothetical protein
803	 52.57	0	758073..760817	+	914	15837408	-	XF0806	-	preprotein translocase subunit SecA
804	 49.40	0	760796..760963	+	55	15837409	-	XF0807	-	hypothetical protein
805	 46.67	0	761414..761548	+	44	15837410	-	XF0808	-	hypothetical protein
806	 50.85	0	761538..761714	-	58	15837411	-	XF0809	-	hypothetical protein
807	 52.47	0	761713..763410	+	565	15837412	-	XF0810	-	extracellular endoglucanase precursor
808	 56.56	0	763690..764550	-	286	15837413	-	XF0811	-	hypothetical protein
809	 51.06	0	764617..764757	+	46	15837414	-	XF0812	-	hypothetical protein
810	 57.69	0	764864..765520	+	218	15837415	-	XF0813	-	hypothetical protein
811	 50.33	0	765771..765923	+	50	15837416	-	XF0814	-	hypothetical protein
812	 54.94	0	765965..766126	+	53	15837417	-	XF0815	-	hypothetical protein
813	 53.72	0	766252..769224	-	990	15837418	-	XF0816	-	zinc protease
814	 54.24	0	769272..769448	+	58	15837419	-	XF0817	-	hypothetical protein
815	 54.92	0	769640..771418	-	592	15837420	-	XF0818	-	endo-1,4-beta-glucanase
816	 54.49	0	771651..771806	-	51	15837421	-	XF0819	-	hypothetical protein
817	 58.17	0	771718..773376	+	552	77747521	-	XF0820	-	hypothetical protein
818	 54.51	0	773555..774064	-	169	15837423	-	XF0821	-	FUR family transcriptional regulator
819	 58.33	0	774081..775484	-	467	15837424	gltX	XF0822	-	glutamyl-tRNA synthetase
820	 55.87	0	776092..777267	+	391	77747522	pgk	XF0823	-	phosphoglycerate kinase
821	 55.90	0	777685..779151	+	488	161378173	-	XF0824	-	pyruvate kinase
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.